Bug#988909: lintian-brush: autopkgtest failure and FTBFS

2021-05-21 Thread Graham Inggs
Source: lintian-brush Version: 0.99 Severity: serious Tags: ftbfs X-Debbugs-CC: debian...@lists.debian.org User: debian...@lists.debian.org Usertags: needs-update Hi Maintainer Sometime between 2021-03-30 and 2021-04-06, lintian-brush's autopkgtests started to fail in testing [1]. I've copied wh

Bug#988835: xfig: flaky autopkgtest on ppc64el and s390x: Get the /MediaBox of pdf files FAILED (testsuite.at:99)

2021-05-20 Thread Graham Inggs
Control: forwarded -1 https://sourceforge.net/p/mcj/tickets/120/ Control: tags -1 + patch This was reported upstream by Michael Hudson-Doyle .

Bug#988495: node-millstone: autopkgtest needs update

2021-05-14 Thread Graham Inggs
Source: node-millstone Version: 0.6.19-3 Severity: serious X-Debbugs-CC: debian...@lists.debian.org User: debian...@lists.debian.org Usertags: needs-update Hi Maintainer Sometime around 2021-04-21, node-millstone's autopkgtests started to fail in testing [1]. I've copied what I hope is the releva

Bug#988049: unblock: gavodachs/2.3+dfsg-3

2021-05-06 Thread Graham Inggs
Hi Ole On Thu, 6 May 2021 at 14:13, Ole Streicher wrote: > You are right, however it should be ensured to migrate before Bullseye, > as it downgrades an RC bug. This is not directly visible, since I > downgraded the bug already after the upload. > > --> if you plan to release before May 24, the m

Bug#976952: [Help] Re: lmfit-py: FTBFS on ppc64el (arch:all-only src pkg): dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.9 returned exit code 13

2021-05-06 Thread Graham Inggs
Control: severity -1 serious This same issue prevents lmfit-py/1.0.1-5 from migrating to testing. Issues preventing migration: blocked by freeze: autopkgtest not fully successful I'll make a team upload shortly, disabling test_model_nan_policy and test_manypeaks_speed during the build and autopk

Bug#988011: unblock: htop/3.0.5-7

2021-05-03 Thread Graham Inggs
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: unblock Please unblock package htop [ Reason ] Fix a division by zero in ZfsCompressedArcMeter [ Impact ] Users of ZFS-on-Linux, with ZfsCompressedArcMeter enabled in htop, but no ZFS volumes moun

Bug#988001: python-fabio: autopkgtest needs update

2021-05-03 Thread Graham Inggs
Source: python-fabio Version: 0.11.0+dfsg-2 Severity: serious X-Debbugs-CC: debian...@lists.debian.org User: debian...@lists.debian.org Usertags: needs-update Hi Maintainer Sometime around 2021-04-28, python-fabio's autopkgtests started to fail in testing [1]. I've copied what I hope is the relev

Bug#987583: unblock: mgba/0.8.4+dfsg-2 (pre-approval)

2021-04-26 Thread Graham Inggs
Control: tags -1 + moreinfo confirmed Hi Ryan On Mon, 26 Apr 2021 at 06:24, Ryan Tandy wrote: > I would like to upload mgba with the following changes: > > - fix undefined references in libretro-mgba (breaks using it with > gnome-games-app; RC bug #986986); > - backport some targeted fixes spe

Bug#987606: sift: does not autobuild on buildds

2021-04-26 Thread Graham Inggs
Source: sift Version: 4.0.3b-6 Severity: important Hi Maintainer This package has 'XS-Autobuild: yes' in debian/control[1], yet it does not seem to autobuild. Was step 3 from `Marking non-free packages as auto-buildable`[2] omitted? Regards Graham [1] https://salsa.debian.org/med-team/sift/-/b

Bug#987043: nmu: 4 packages where adequate reports symbol-size-mismatch

2021-04-26 Thread Graham Inggs
Hi Andreas On Fri, 16 Apr 2021 at 11:12, Andreas Beckmann wrote: > nmu tcpreplay_4.3.3-2 . ANY . unstable . -m "Rebuild to update symbol size > for pcap_version." > nmu ipband_0.8.1-5.1 . ANY . unstable . -m "Rebuild to update symbol size for > pcap_version." > nmu mpqc3_0.0~git20170114-4.1 . A

Bug#987493: unblock: gutenprint/5.3.3-5

2021-04-25 Thread Graham Inggs
Control: retitle -1 [pre-approval] unblock: gutenprint/5.3.3-5 Control: tags -1 + moreinfo + confirmed Hi Didier On Sat, 24 Apr 2021 at 17:48, Didier 'OdyX' Raboud wrote: > This is a pre-approval request for package package gutenprint. Please go ahead and upload, and remove the moreinfo tag onc

Bug#987488: unblock: irssi/20210314-1

2021-04-25 Thread Graham Inggs
Control: retitle -1 unblock: ircii/20210314-1 Contro: tags -1 + moreinfo Hi Jan On Sat, 24 Apr 2021 at 16:21, Jan Wagner wrote: > [ Risks ] > While the diffstat looks huge, a significant part is removed code. This debdiff is unreviewable. Please provide a filtered debdiff along with the comman

Bug#987400: [Pkg-tcltk-devel] Bug#987397: tcltls: build conflict with openssl requires removal of too many packages

2021-04-24 Thread Graham Inggs
Control: tags -1 + moreinfo confirmed Hi Andrej On Fri, 23 Apr 2021 at 13:12, Andrej Shadura wrote: > I finally came back from lunch, the latest debdiff and the diffoscope output > are attached. The diffoscope output of a no-change rebuild of 1.7.22-1 and 1.7.22-2 should show fewer differences

Bug#986908: unblock: snort 2.9.15.1-5

2021-04-20 Thread Graham Inggs
Control: tags -1 + moreinfo Hi Javier On Mon, 19 Apr 2021 at 23:27, Chris Hofstaedtler wrote: > > > $ debdiff snort_2.9.15.1-4_i386.deb snort_2.9.15.1-5_i386.deb > [..] > > The debdiff does not seem to show any actual packaging changes. Are > you sure you diffed the correct files? This looks li

Bug#986816: unblock: binoculars/0.0.5-1

2021-04-19 Thread Graham Inggs
Control: tags -1 + moreinfo Hi Frédéric You didn't include a source debdiff with your unblock request. Also, the Vcs-Browser URL [1] in debian/control returns 404. I generated a diff and got the following: 61 files changed, 19938 insertions(+), 2005 deletions(-) This is unreviewable by us. On

Bug#986727: pexpect: flaky autopkgtest

2021-04-10 Thread Graham Inggs
Source: pexpect Version: 4.8.0-1 Severity: serious X-Debbugs-CC: debian...@lists.debian.org User: debian...@lists.debian.org Usertags: flaky Hi Maintainer The autopkgtests of pexpect fail regularly and are therefore unsuitable for regression testing. I've copied below what I hope is the relevant

Bug#986726: boxer-data: autopkgtest regressionin testing

2021-04-10 Thread Graham Inggs
Source: boxer-data Version: 10.8.20 Severity: serious X-Debbugs-CC: debian...@lists.debian.org User: debian...@lists.debian.org Usertags: regression Hi Maintainer The autopkgtest of boxer-data fails in testing where it succeeded in the past [1]. The current failure seems to be due to the removal

Bug#980809: rmatrix: breaks autopkgtest of r-cran-glmmtmb on s390x

2021-04-09 Thread Graham Inggs
Control: tags -1 + fixed-upstream Fixed in Matrix upstream svn rev 3376 [1]. [1] https://r-forge.r-project.org/scm/viewvc.php?view=rev&root=matrix&revision=3376

Bug#980809: rmatrix: breaks autopkgtest of r-cran-glmmtmb on s390x

2021-04-08 Thread Graham Inggs
Control: forwarded -1 https://deb.li/6f4z TMB upstream have submitted a bug report [1] to R-forge. > Headers need update corresponding to new SuiteSparse version 5.7.1 > > SuiteSparse was recently updated from version 4.2.1 to 5.7.1, however without > updating the header `inst/cholmod.h` accordi

Bug#986256: simka: flaky amd64 autopkgtest: regularly times out after 2:47 h

2021-04-06 Thread Graham Inggs
Control: reopen -1 This is still occurring with simka 1.5.3-3, see: https://ci.debian.net/packages/s/simka/testing/amd64/

Bug#986307: [Debian-med-packaging] Bug#986307: marked as done (scrappie: flaky armhf autopkgtest: Invalid control character at: line 1 column 91 (char 90))

2021-04-03 Thread Graham Inggs
Control: reopen -1 The autopkgtest now fails with: dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) Skip Test 3 on armhf (see bug #986307) autopkgtest [08:53:06]: test run-unit-test: ---] autopkgtest [08:53:06]: test run

Bug#985724: libkainjow-mustache: autopkgtest failure due to output on stderr

2021-03-22 Thread Graham Inggs
Source: libkainjow-mustache Version: 4.1+ds-1 Severity: important Tags: patch X-Debbugs-CC: debian...@lists.debian.org User: debian...@lists.debian.org Usertags: fails-always Hi Maintainer The autopkgtests of libkainjow-mustache fail on armhf[1] and ppc64el[2] due to output on stderr. As these a

Bug#985639: python-fakeredis: autopkgtest fails on 32-bit architectures

2021-03-21 Thread Graham Inggs
Source: python-fakeredis Version: 1.4.1-1 Severity: important Forwarded: https://github.com/jamesls/fakeredis/issues/295 X-Debbugs-CC: debian...@lists.debian.org User: debian...@lists.debian.org Usertags: fails-always Hi Maintainer Since the upload of python-fakeredis/1.4.1-1, its autopkgtests fa

Bug#984882: unblock: debian-science/1.14.1

2021-03-11 Thread Graham Inggs
Control: tags -1 + moreinfo Hi Andreas On Tue, 9 Mar 2021 at 19:03, Andreas Tille wrote: > [ ] attach debdiff against the package in testing > (I do not see any reason for a debdiff of the autogenerated package) Autogenerated or not, the debdiff is the thing we need to review, in order

Bug#975711: sks: autopkgtest failure since git snapshot update

2021-03-10 Thread Graham Inggs
Control: severity -1 serious Control: retitle -1 sks: autopkgtest failure since git snapshot update Autopkgtest regressions are RC for bullseye.

Bug#984642: unblock refpolicy / policycoreutils

2021-03-09 Thread Graham Inggs
Hi Russell Neither refpolicy nor policycoreutils are in the list of key packages. In the upcoming hard freeze, for non-key packages with (non-trivial) autopkgtests, the rules of the soft freeze still apply [1]. So you could avoid the need for unblocks for these packages by adding an autopkgtest t

Bug#980809: rmatrix: breaks autopkgtest of r-cran-glmmtmb on s390x

2021-03-09 Thread Graham Inggs
Control: tags -1 - fixed-upstream + upstream Control: notforwarded -1 >From TMB upstream [1]: > Digging a bit deeper I found that after calling > > M_cholmod_factorize_p(A, mm, (int*)NULL, 0 /*fsize*/, f, &c) > > the cholmod_common struct contains bogus, e.g. c.status=14903956 and > c.dtype=152

Bug#984702: r-cran-effectsize: autopkgtest regression

2021-03-09 Thread Graham Inggs
Hi Andreas On Mon, 8 Mar 2021 at 17:43, Andreas Tille wrote: > it would be great if someone could have a look at this. I have a fix. I will upload shortly. Regards Graham

Bug#982171: libint breaks psi4 autopkgtest: 'str' object is not callable; perhaps you missed a comma?

2021-03-07 Thread Graham Inggs
psi4 1:1.3.2+dfsg-2 and libint 1.2.1-5 uploaded which should be able to migrate together.

Bug#984702: r-cran-effectsize: autopkgtest regression

2021-03-07 Thread Graham Inggs
Source: r-cran-effectsize Version: 0.4.3-1 Severity: serious Tags: bullseye sid X-Debbugs-CC: debian...@lists.debian.org User: debian...@lists.debian.org Usertags: regression Hi Maintainer Since r-cran-rstanarm has migrated to testing, the autopkgtests of r-cran-effectsize are succeeding again on

Bug#980809: rmatrix: breaks autopkgtest of r-cran-glmmtmb on s390x

2021-03-06 Thread Graham Inggs
Hi Dirk Is there a bug opened for this issue with Matrix upstream? I may have some useful feedback from TMB upstream to add. Regards Graham

Bug#983748: dh-r: pkg-r-autopkgtest breaks autopkgtests

2021-03-04 Thread Graham Inggs
Hi Andreas On Thu, 4 Mar 2021 at 16:57, Andreas Tille wrote: > I fail to understand this. Before version 3.0.1+dfsg-1 has migrated to > testing tests of this version were done in unstable, right? No, the tests that britney schedules for migration are run in testing, and usually only the package

Bug#983748: dh-r: pkg-r-autopkgtest breaks autopkgtests

2021-03-04 Thread Graham Inggs
Hi Andreas On Thu, 4 Mar 2021 at 15:09, Andreas Tille wrote: >https://ci.debian.net/packages/r/r-bioc-mutationalpatterns/ > > I discussed several times with Paul Gevers about this view. I consider > it not helpful to print test results of very outdated versions for > unstable (even older the

Bug#983748: dh-r: pkg-r-autopkgtest breaks autopkgtests

2021-03-03 Thread Graham Inggs
Hi Andreas On Wed, 3 Mar 2021 at 12:12, Andreas Tille wrote: > My motivation for the change was that for > example in r-bioc-mutationalpatterns (see bug #983027) the > autopkgtest-pkg-r script failed to install all needed packages > to run its test. This was not the only package that was affecte

Bug#983749: The autopkgtest test depends are not available on s390x

2021-03-01 Thread Graham Inggs
Control: reopen -1 Hi Andreas Please drop your changes from 0.9-7+dfsg-3 and 0.9-7+dfsg-4 and revert the package to the state it was in 0.9-7+dfsg-2. Now is not the time to be dropping architectures as r-cran-sf has several reverse-dependencies that will need to be taken care of. Also, this is n

Bug#983748: dh-r: pkg-r-autopkgtest breaks autopkgtests

2021-03-01 Thread Graham Inggs
Control: reopen -1 Hi Andreas This didn't work [1]. You need root in order to run 'apt-get install': E: No packages found E: Could not open lock file /var/lib/dpkg/lock-frontend - open (13: Permission denied) E: Unable to acquire the dpkg frontend lock (/var/lib/dpkg/lock-frontend), are you roo

Bug#983748: dh-r: pkg-r-autopkgtest breaks autopkgtests

2021-03-01 Thread Graham Inggs
Hi Andreas On Mon, 1 Mar 2021 at 10:49, Andreas Tille wrote: > However, the issue should have been become obvious even in unstable > 10 days ago. Well, it was visible in unstable, e.g. in r-bioc-destiny [1], and also on the tracker page [2] it says "Debci reports failed tests", but certainly not

Bug#983547: [Pkg-julia-devel] Bug#983547: julia-common: julia-config.jl does not find libjulia.so

2021-02-28 Thread Graham Inggs
Mo, Norbert, do you think we should add libjulia-dev to julia's Recommends?

Bug#983547: [Pkg-julia-devel] Bug#983547: julia-common: julia-config.jl does not find libjulia.so

2021-02-28 Thread Graham Inggs
Hi Greg On Mon, 1 Mar 2021 at 01:57, Gregory None wrote: >> Instead of adding the symlink, try installing the libjulia-dev package. > > That worked like a charm, thanks! Thanks for the feedback. Regards Graham

Bug#983748: dh-r: pkg-r-autopkgtest breaks autopkgtests

2021-02-28 Thread Graham Inggs
Source: dh-r Version: 20210218 Severity: serious Tags: sid bullseye X-Debbugs-CC: debian...@lists.debian.org User: debian...@lists.debian.org Usertags: issue Hi Maintainer The recent upload of dh-r causes autopkgtests using pkg-r-autopkgtest to fail. See for example the output of r-bioc-affy [1

Bug#873149: python-argcomplete: Should set TERM while running tests

2021-02-27 Thread Graham Inggs
With bash 5.1, python-argcomplete's tests now fail if TERM is set. Unexporting TERM allows the tests to succeed with old and new versions of bash (tested with 4.4.18, 5.0 and 5.1).

Bug#983547: [Pkg-julia-devel] Bug#983547: julia-common: julia-config.jl does not find libjulia.so

2021-02-26 Thread Graham Inggs
Hi Gregory On Fri, 26 Feb 2021 at 02:48, Gregory wrote: > Try for example: > $/usr/share/julia/julia-config.jl --allflags > > It will return (among other things): > libjulia.so: cannot open shared object file: no such file or directory > > Adding a symlink libjulia.so that points to libjulia.so.1

Bug#972936: libgcc-s1 needs Breaks: libgcc1 (<< 1:10)

2021-02-25 Thread Graham Inggs
Hi On Mon, 15 Feb 2021 at 10:07, Matthias Klose wrote: > On 2/14/21 5:58 PM, Simon McVittie wrote: >> Obviously, the transitional packages would ideally be built by src:gcc-10 >> rather than being a separate source package, and Ryan only prototyped them >> as a separate source package to be able

Bug#980809: rmatrix: breaks autopkgtest of r-cran-glmmtmb on s390x

2021-02-23 Thread Graham Inggs
Hi Dirk On Tue, 23 Feb 2021 at 15:34, Dirk Eddelbuettel wrote: > If it were me I would turn off the autopkgtest in r-cran-glmmtmb (maybe just > on s390x) and move on. That would just be hiding the problem. If it is the kind of bug I described previously, it shows up more often on big-endian sys

Bug#980809: rmatrix: breaks autopkgtest of r-cran-glmmtmb on s390x

2021-02-23 Thread Graham Inggs
Control: affects -1 src:r-cran-glmmtmb Control: affects -1 src:r-cran-tmb Hi Andreas On Tue, 23 Feb 2021 at 10:30, Andreas Tille wrote: > If we do not find a timely solution what do you think about excluding > s390x temporarily from the list of architectures of this package and set > this bug to

Bug#980809: rmatrix: breaks autopkgtest of r-cran-glmmtmb on s390x

2021-02-23 Thread Graham Inggs
Control: reassign -1 src:rmatrix 1.3-0-1 Control: tags -1 - fixed-upstream Control: forwarded -1 https://github.com/kaskr/adcomp/issues/340 Hi Dirk On Thu, 18 Feb 2021 at 19:58, Dirk Eddelbuettel wrote: > Thanks for the bug tracker follow-up which made me aware of the ongoing > discussion in #6

Bug#983315: r-cran-plotly: autopkgtest regression

2021-02-22 Thread Graham Inggs
Source: r-bioc-plotly Version: 4.9.3+dfsg-1 Severity: serious Tags: sid bullseye X-Debbugs-CC: debian...@lists.debian.org User: debian...@lists.debian.org Usertags: regression Hi Maintainer Since the upload of 4.9.3+dfsg-1, r-cran-ploty has been failing its own autopkgtests [1] with the output be

Bug#980809: Matrix package default tolerance on s390x (Re: Bug#980809: rmatrix: breaks autopkgtest of r-cran-glmmtmb on s390x)

2021-02-17 Thread Graham Inggs
Hi Dirk On Wed, 17 Feb 2021 at 15:10, Dirk Eddelbuettel wrote: > Graham: What does that bigendian box say for Sys.info()[["machine"]] ? The other big-endian box I tested was perotto.debian.net [*], it says: > Sys.info()[["machine"]] [1] "ppc64" > Should we test for endianness instead? An

Bug#980809: Matrix package default tolerance on s390x (Re: Bug#980809: rmatrix: breaks autopkgtest of r-cran-glmmtmb on s390x)

2021-02-17 Thread Graham Inggs
Hi Martin On Wed, 17 Feb 2021 at 11:45, Martin Maechler wrote: > 1) I think I might simply disable the check *on* that platform .. or > platforms with similar characteristics. I was able to reproduce the issue on our big-endian PowerPC architecture as well, so maybe you can use the following i

Bug#980809: rmatrix: breaks autopkgtest of r-cran-glmmtmb on s390x

2021-02-15 Thread Graham Inggs
Hi Dirk On Sun, 14 Feb 2021 at 15:57, Dirk Eddelbuettel wrote: > Sure. Just fire up R on the box, don't install anything beyond r-base-core > (and maybe r-recommended accounting for a few of the ones above) and then say Perfect, thank you! I installed only r-base-core and r-base-dev (gfortran,

Bug#980809: rmatrix: breaks autopkgtest of r-cran-glmmtmb on s390x

2021-02-14 Thread Graham Inggs
glmmTMB upstream came up with a minimal reproducer (see forwarded bug): stopifnot(require("testthat"), require("glmmTMB"), require("lme4")) data("Orthodont", package="nlme") fm1 <- glmmTMB(distance ~ age + (age|Subject), data = Orthodont) I can confirm this fails on the s390x

Bug#978099: libhdf4: Please add support for riscv64

2021-02-04 Thread Graham Inggs
On Fri, 5 Feb 2021 at 08:30, Sebastiaan Couwenberg wrote: > No, riscv64 is not a release architecture and the soft freeze is next > week. Ubuntu will have to carry this patch a little longer. Ack, thanks.

Bug#978099: libhdf4: Please add support for riscv64

2021-02-04 Thread Graham Inggs
Hi Maintainers Any chance of an upload soon? Regards Graham

Bug#980809: rmatrix: breaks autopkgtest of r-cran-glmmtmb on s390x

2021-02-02 Thread Graham Inggs
Control: forwarded -1 https://github.com/glmmTMB/glmmTMB/issues/665 After another detour via #981623, r-cran-glmmtmb is now also rebuilt. Even with the rebuilt r-cran-glmmtmb, I still see the "gradient function must return a numeric vector of length" errors on s390x and ppc64, which are both big-e

Bug#981623: r-cran-glmmtmb: needs a rebuild when r-cran-tmb is updated

2021-02-02 Thread Graham Inggs
Source: r-cran-glmmtmb Version: 1.0.2.1-1 Forwarded: https://github.com/glmmTMB/glmmTMB/issues/615 Hi Maintainer Since the upload of r-cran-tmb 1.7.18-1, r-cran-glmmtmb's autopkgtests show hundreds of similar errors [1]: Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) : "FreeADFunObject"

Bug#980809: rmatrix: breaks autopkgtest of r-cran-glmmtmb on s390x

2021-01-31 Thread Graham Inggs
Hi Dirk On Sun, 31 Jan 2021 at 16:13, Dirk Eddelbuettel wrote: > This is a bug in glmmTMB. I don't see how you can be so sure. > All the 'gradient function must ...' errors are from its tests and > points to me to a recent change in R (where boolean comparisons can now check > if the compared v

Bug#980809: rmatrix: breaks autopkgtest of r-cran-glmmtmb on s390x

2021-01-30 Thread Graham Inggs
Control: reopen -1 Hi Dirk Paul's test results showed that the run-unit-test autopkgtest still fails with the same errors ( Error: gradient function must return a numeric vector of length...) as in my original report. The "Package version inconsistency detected" warning is now gone (due to #9809

Bug#981342: mpich: autopkgtest failure on s390x

2021-01-29 Thread Graham Inggs
Source: mpich Version: 3.4-4 Severity: serious X-Debbugs-CC: debian...@lists.debian.org User: debian...@lists.debian.org Usertags: regression Hi Maintainer Since the upload of mpich 3.4-4, its own autopkgtests have been failing on s390x [1] and continue to fail in the same way with 3.4.1-1. I've

Bug#980809: [R-pkg-team] Bug#980809: rmatrix: breaks autopkgtest of r-cran-glmmtmb on s390x

2021-01-27 Thread Graham Inggs
Hi Dirk On Thu, 28 Jan 2021 at 01:12, Dirk Eddelbuettel wrote: > Any update here? It still points at Matrix aka rmatrix aka r-cran-matrix, > and I still think wrongly. I'm still waiting for the results of the autopkgtest against the rebuilt r-cran-tmb on s390x. Unfortunately, it went into the q

Bug#980902: r-cran-tmb: prints warning when rmatrix is upgraded

2021-01-26 Thread Graham Inggs
Control: tags -1 - patch + pending Control: severity -1 normal Fix committed in git. Still waiting on s390x autopkgtest results before uploading. https://salsa.debian.org/r-pkg-team/r-cran-tmb/-/commit/b951d154765262656a43973fec5412c6df37cefa

Bug#980997: nmu: packages that build-depend on the libsimde-dev header-only library

2021-01-26 Thread Graham Inggs
Hi Michael On Mon, 25 Jan 2021 at 11:51, Michael R. Crusoe wrote: > Please rebuild all packages that build-dep on libsimde-dev so they may > gain the benefits of the new release. Let's schedule these as soon as simde 0.7.2-2 has migrated to testing. There is an autopkgtest failure on s390x, but

Bug#980902: [R-pkg-team] Bug#980902: r-cran-tmb: prints warning when rmatrix is upgraded

2021-01-25 Thread Graham Inggs
Hi Dirk On Mon, 25 Jan 2021 at 16:13, Dirk Eddelbuettel wrote: > But upstream had that choice too and selected a warning not a stop. It > appears to be a non-fatal issue. My deviation from upstream here was intentional. The purpose being to fail the autopkgtest, and our users should never ever

Bug#980902: [R-pkg-team] Bug#980902: r-cran-tmb: prints warning when rmatrix is upgraded

2021-01-25 Thread Graham Inggs
On Mon, 25 Jan 2021 at 11:24, Andreas Tille wrote: > Looks sensible. As I mention before team uploads are always welcome. So > please go for it. Thanks Andreas! I will do once the autopkgtests have finished on s390x. For reference, this is what the failing output looks like with my patch in p

Bug#980902: r-cran-tmb: prints warning when rmatrix is upgraded

2021-01-25 Thread Graham Inggs
Control: tags -1 + patch The attached patch upgrades the warning() to a stop(). This will cause r-cran-tmb's autopkgtests to fail whenever rmatrix is upgraded. Then we will know it is time for a rebuild, or a new upload. Let me know if this seems a reasonable solution, and I'll do a team upload.

Bug#980902: rmatrix: which reverse dependencies need rebuilds?

2021-01-24 Thread Graham Inggs
Hi On Sun, 24 Jan 2021 at 18:06, Graham Inggs wrote: > I'm awaiting autopkgtest results on the binNMU'd r-cran-tmb. I will > update this bug and #980809 when they are in. The autopkgtests for r-cran-tmb [1] and r-cran-glmmtmb [2] have completed on all architectures except for

Bug#980902: rmatrix: which reverse dependencies need rebuilds?

2021-01-24 Thread Graham Inggs
Hi Dirk On Sun, 24 Jan 2021 at 14:47, Dirk Eddelbuettel wrote: > R code can promote warnings to errors on a per-session basis: Thanks! This could be useful in the r-cran-tmb autopkgtest. > I am still not quite sure what the best way here is. With hard '==' warnings > we get ourselves the need

Bug#980902: rmatrix: which reverse dependencies need rebuilds?

2021-01-24 Thread Graham Inggs
Hi Andreas On Sun, 24 Jan 2021 at 09:55, Andreas Tille wrote: > dh-r injects versioned dependencies if this is specified in the > DESCRIPTION file of an r-* package. If this is not specified we > need to add this manually (which I can do - but for sure the > automatic solution would be more conv

Bug#980902: rmatrix: which reverse dependencies need rebuilds?

2021-01-24 Thread Graham Inggs
Hi Dirk On Sun, 24 Jan 2021 at 07:10, Dirk Eddelbuettel wrote: > There is a confusion here. You filed this again rmatrix (aka "Matrix"). > Matrix does not impose dependencies -- dependent packages do. I filed against rmatrix, as this was the package that started this "transition". Also, I reall

Bug#980902: rmatrix: which reverse dependencies need rebuilds?

2021-01-23 Thread Graham Inggs
Source: rmatrix Version: 1.3-2-1 Severity: important Control: affects -1 src:r-cran-tmb X-Debbugs-CC: debia...@lists.debian.org Hi R Maintainers While investigating #980809 [1], I found the following output in the autopkgtest logs of and r-cran-glmmtmb and r-cran-tmb: Warning message: In checkMa

Bug#980809: [R-pkg-team] Bug#980809: rmatrix: breaks autopkgtest of r-cran-glmmtmb on s390x

2021-01-22 Thread Graham Inggs
Hi Dirk On Fri, 22 Jan 2021 at 23:38, Dirk Eddelbuettel wrote: > Can you still please talk to the corresponding Debian maintainer for glmmTMB > so that he/she can walk it upstream? I have assigned this bug to both packages, until we can figure out where the fix needs to happen. > The package is

Bug#980809: [R-pkg-team] Bug#980809: rmatrix: breaks autopkgtest of r-cran-glmmtmb on s390x

2021-01-22 Thread Graham Inggs
Hi Dirk On Fri, 22 Jan 2021 at 22:39, Dirk Eddelbuettel wrote: > Matrix 1.3.0 from December has long been known to fail. Please use release > 1.3.2. The test at [2], run at 2021-01-22 17:34:51 UTC was against r-cran-matrix/1.3-2-1, see below: Get:61 http://deb.debian.org/debian testing/main s

Bug#980809: rmatrix: breaks autopkgtest of r-cran-glmmtmb on s390x

2021-01-22 Thread Graham Inggs
While investigating this failure, I noticed the following output in the test log: > library('glmmTMB') Warning message: In checkMatrixPackageVersion() : Package version inconsistency detected. TMB was built with Matrix version 1.2.18 Current Matrix version is 1.3.2 Please re-install 'TMB' from so

Bug#980809: rmatrix: breaks autopkgtest of r-cran-glmmtmb on s390x

2021-01-22 Thread Graham Inggs
Source: rmatrix, r-cran-glmmtmb Control: found -1 rmatrix/1.3-0-1 Control: found -1 r-cran-glmmtmb/1.0.2.1-1 Severity: serious Tags: sid bullseye X-Debbugs-CC: debian...@lists.debian.org User: debian...@lists.debian.org Usertags: breaks needs-update Hi Maintainers The upload of rmatrix/1.3-0-1 ca

Bug#980751: petsc: breaks multiple autopkgtests: undefined reference to 'MPIU_SUM'

2021-01-22 Thread Graham Inggs
Control: severity -1 important Indeed, these autopkgtests were fixed by the binNMU of slepc. Lowering severity so openmpi and petsc can migrate, but we need to figure out what happened here so we can prevent it in future. Does slepc need a tighter dependency on the version of slepc that it was b

Bug#980751: petsc: breaks multiple autopkgtests: undefined reference to 'MPIU_SUM'

2021-01-21 Thread Graham Inggs
Might be fixed by binNMU of slepc, see #980749.

Bug#980751: petsc: breaks multiple autopkgtests: undefined reference to 'MPIU_SUM'

2021-01-21 Thread Graham Inggs
Source: petsc Version: 3.14.3+dfsg1-1 Severity: serious X-Debbugs-CC: debian...@lists.debian.org User: debian...@lists.debian.org Usertags: breaks Control: affects -1 deal.ii dolfin meshr slepc4py Hi Maintainer The recent upload of petsc 3.14.3+dfsg1-1 appears to have caused the autopkgtests of a

Bug#980740: r-bioc-geoquery: flaky autopkgtests failing to download test data

2021-01-21 Thread Graham Inggs
Hi Andreas On Thu, 21 Jan 2021 at 11:19, Andreas Tille wrote: > so what is you suggestion? Simply droping the test is possibly > not the best solution. Marking it flaky comes to mind. What > do you think? If it were my package, I would probably drop the tests that download from the internet,

Bug#980740: r-bioc-geoquery: flaky autopkgtests failing to download test data

2021-01-21 Thread Graham Inggs
Source: r-bioc-geoquery Version: 2.58.0+dfsg-1 Severity: serious Tags: sid bullseye X-Debbugs-CC: debian...@lists.debian.org User: debian...@lists.debian.org Usertags: flaky Hi Maintainer The autopkgtests of r-bioc-geoquery seem to download large amounts of test data from the internet, and these

Bug#978066: pmix transition

2021-01-20 Thread Graham Inggs
Hi Alastair On Wed, 20 Jan 2021 at 16:44, Alastair McKinstry wrote: > Can these bugs be closed ? Not until they are fixed. > pmix tests are failing because of an openmpi bug , but its no longer due > to pmix. > > Ditto, ucx errors that caused the failure are fixed in openmpi-4.1.0-6. ucx 1.10.

Bug#974778: llvmlite: stop using llvm-toolchain-10

2021-01-20 Thread Graham Inggs
Control: severity -1 normal Llvmlite has switched back to using LLVM 9 in 0.35.0-2. Lowering severity, but leaving this bug open for switching to LLVM 11.

Bug#980211: libextractor: FTBFS (flaky tests)

2021-01-19 Thread Graham Inggs
Control: retitle -1 libextractor: FTBFS (flaky tests) It turns out these are just flaky tests. Giving back the failed builds eventually resulted in success. Reproducible builds [1] shows a history of failures in bullseye and unstable, across all architectures. [1] https://tests.reproducible-bu

Bug#980448: ucx: breaks openmpi autopkgtest

2021-01-19 Thread Graham Inggs
Source: ucx Version: 1.10.0~rc1-1 Severity: serious X-Debbugs-CC: debian...@lists.debian.org User: debian...@lists.debian.org Usertags: breaks Hi Maintainer The upload of ucx/1.10.0~rc1-1 to unstable causes the autopkgtests of openmpi/4.0.5-7 in testing to fail [1]. I've copied what I hope is th

Bug#978066: pmix: breaks openmpi autopkgtest

2021-01-19 Thread Graham Inggs
Control: reopen -1 Still failing [1], see e.g. 4.0.5-72021-01-18 01:04:56 UTC pmix/4.0.0-3 src:pmix from unstable 1m 46s fail britney test log (10.4 KB) artifacts (3.18 KB) [1] https://ci.debian.net/packages/o/openmpi/testing/amd64/

Bug#980238: do not depend on the non-public binutils ABI

2021-01-19 Thread Graham Inggs
Control: reopen -1 libucx0 1.10.0~rc1-4 still has a dependency on libbinutils. It seems you have a typo: --disable-backtrace-details instead of --disable-backtrace-detail Please also remove the Build-Depends on binutils-dev.

Bug#980211: libextractor: FTBFS against librpm9 (test failure)

2021-01-15 Thread Graham Inggs
Source: libextractor Version: 1:1.10-2 Severity: serious Tags: ftbfs Hi Maintainer During a recent rebuild against librpm9, libextractor FTBFS on several architectures where it built previously [1]. I've copied what I hope is the relevant part of the log below. Regards Graham [1] https://buil

Bug#980090: r-cran-dbplyr: autopkgtest regression

2021-01-14 Thread Graham Inggs
Source: r-cran-dbplyr Version: 2.0.0-1 X-Debbugs-CC: debian...@lists.debian.org Severity: serious Control: block 980011 by -1 User: debian...@lists.debian.org Usertags: regression Hi Maintainer Since the upload of 2.0.0-1, r-cran-dbplyr has been failing its own autopkgtests. This prevents its mi

Bug#980082: r-bioc-shortread: autopkgtest failure in testing and unstable

2021-01-14 Thread Graham Inggs
Source: r-bioc-shortread Version: 1.48.0-1 X-Debbugs-CC: debian...@lists.debian.org Severity: serious Tags: bullseye sid User: debian...@lists.debian.org Usertags: needs-update Hi Maintainer The autopkgtests of r-bioc-shortread are failing in testing and unstable [1]. I've copied what I hope is

Bug#978066: pmix: breaks openmpi autopkgtest

2021-01-11 Thread Graham Inggs
Control: reopen -1 pmix/4.0.0-2 from unstable still causes the autopkgtests of openmpi 4.0.5-7 in testing to fail If it is not intended that this combination should work together, please add Breaks: libopenmpi3 (<< 4.1.0-3) or similar to libpmix2.

Bug#974779: [Pkg-julia-devel] Bug#974779: Bug#974779: closed by Debian FTP Masters (reply to Gianfranco Costamagna ) (Bug#974779: fixed in l

2021-01-11 Thread Graham Inggs
On Tue, 12 Jan 2021 at 01:15, Norbert Preining wrote: > So I would like to know what remains to be done form my side? Well Julia still needs to upgrade to llvm-toolchain-11 for bookworm, so I suggest to leave this bug open until then.

Bug#979480: mpi4py: autopkgtest failure on arm64, armhf and ppc64el

2021-01-06 Thread Graham Inggs
Source: mpi4py Version: 3.0.3-7 X-Debbugs-CC: debian...@lists.debian.org Severity: serious Tags: bullseye sid User: debian...@lists.debian.org Usertags: needs-update Hi Maintainer The autopkgtests of mpi4py have been failing since the upload of openmpi 4.1.0-1 to unstable. I'm reporting this for

Bug#971429: simde: autopkgtest failure on armhf

2021-01-06 Thread Graham Inggs
Control: reopen -1 Hi Maintainer The autopkgtests of simde 0.7.0-2 still fail on armhf in what looks to me to be the same way. Regards Graham

Bug#978066: pmix: breaks openmpi autopkgtest

2021-01-01 Thread Graham Inggs
Control: reopen -1 pmix/4.0.0~rc1-2 from unstable still causes the autopkgtests of openmpi 4.0.5-7 in testing to fail [1], see for example: 4.0.5-7 2020-12-29 13:13:26 UTC pmix/4.0.0~rc1-2 src:pmix from unstable 2m 14s fail britney test log (9.92 KB) artifacts (3.17 KB) Does libpmix2 n

Bug#978949: dh-python: pybuild build system detection not consistent

2020-12-31 Thread Graham Inggs
Source: dh-python Version: 4.20201102 Hi Maintainer Pybuild's build system detection is not consistent across architectures. While building src:python-blosc, the build system was detected as distutils for most architectures, except for ia64 [1], riscv64 [2], sparc64 [3] and x32 [4] it was detecte

Bug#975696: [Pkg-sugar-devel] Bug#975696: link-grammar: multi-thread test fails

2020-12-29 Thread Graham Inggs
Control: reopen -1 Hi Jonas The build of link-grammar/5.8.0-3 has already failed on ppc64el [1] (details below). As fun as it is, please let's avoid the BTS sports and leave this bug open until link-grammar builds and passes its autopkgtests reliably. Regards Graham [1] https://buildd.debian

Bug#975696: [Pkg-sugar-devel] Bug#975696: link-grammar: multi-thread test fails

2020-12-29 Thread Graham Inggs
Control: severity -1 serious Hi Jonas Happy Holidays! On Sun, 27 Dec 2020 at 19:12, Jonas Smedegaard wrote: > I tightened the test checking - enabled them during build and made them > more verbose (and explicitly passed environment variable "srcdata" which > might have previously failed). > > T

Bug#978066: pmix: breaks openmpi autopkgtest

2020-12-25 Thread Graham Inggs
Source: pmix Version: 4.0.0~rc1-1 Severity: serious Tags: ftbfs Control: affects -1 + src:deal.ii X-Debbugs-CC: debian...@lists.debian.org User: debian...@lists.debian.org Usertags: breaks Hi Maintainer The upload of pmix 4.0.0~rc1-1 to unstable causes the autopkgtests of openmpi in testing to fa

Bug#978032: python-cobra: autopkgtest regression in testing

2020-12-24 Thread Graham Inggs
Source: python-cobra Version: 0.19.0-1 Severity: serious Tags: sid bullseye X-Debbugs-CC: debian...@lists.debian.org User: debian...@lists.debian.org Usertags: regression Hi Maintainer The autopkgtests of python-cobra recently started to fail in testing [1]. I've copied what I hope is the relevan

Bug#973154: apertium-kaz-tat: FTBFS: hfst-concatenate: .deps/any-symbol.hfst is not a valid transducer file

2020-12-24 Thread Graham Inggs
HI Nilesh On Thu, 24 Dec 2020 at 10:48, Nilesh wrote: > > I can't seem to reproduce this, can you initiate a rebuild for this? > > I suspect if new apertium upload fixed this somehow. Attaching the log in any > case. Reproducible builds [1] shows apertium-kaz-tat is currently building successfu

Bug#977868: osmcoastline: FTBFS in bullseye and sid

2020-12-21 Thread Graham Inggs
Source: osmcoastline Version: 2.2.4-2 Severity: serious Tags: ftbfs bullseye sid Hi Maintainer As per Reproducible Builds [1], osmcoastline FTBFS in bullseye and sid. I've copied what I hope is the relevant part of the log below. Regards Graham [1] https://tests.reproducible-builds.org/debian/

Bug#977405: libgtkdatabox-dev, libgtkdatabox-doc: both ship /usr/share/doc/libgtkdatabox-dev/{AUTHORS, README}

2020-12-15 Thread Graham Inggs
On Mon, 14 Dec 2020 at 22:03, Andreas Beckmann wrote: > Preparing to unpack .../libgtkdatabox-doc_1%3a0.9.3.1-1.1_all.deb ... > Unpacking libgtkdatabox-doc (1:0.9.3.1-1.1) ... > dpkg: error processing archive > /var/cache/apt/archives/libgtkdatabox-doc_1%3a0.9.3.1-1.1_all.deb (--unpack): >

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