Bug#852498: O: libsyncml -- SyncML protocol library

2017-01-24 Thread Michael Banck
Package: wnpp Severity: normal I intend to orphan the scmxx package. The package description is: Libsyncml implement the SyncML protocol. It supports SyncML version 1.0, 1.1 and 1.2. The available transport are Obex and HTTP. This library can be used as a client or as a server.

Bug#852497: O: scmxx -- Exchange data with Siemens mobile phones

2017-01-24 Thread Michael Banck
Package: wnpp Severity: normal I intend to orphan the scmxx package. The package description is: SCMxx is a console program that allows you to exchange certain types of data with mobile phones made by Siemens. Some of the data types that can be exchanged are logos, ring tones, vCalendars, phon

Bug#852496: RM: libgcal -- ROM; obsolete and unmaintained upstream

2017-01-24 Thread Michael Banck
Package: ftp.debian.org Severity: normal Hi, please remove src:libgcal and its binary packages libgcal-dev and libgcal0. AFAIK those haven't worked in a long time and are unmaintained upstream. Thanks, Michael

Bug#826069: [Debichem-devel] Bug#826069: libghemical5v5: breaks color rendering and atom generation in ghemical

2017-01-23 Thread Michael Banck
Hi, On Mon, Jan 23, 2017 at 11:31:34AM +0100, Petter Reinholdtsen wrote: > According to 'apt-cache rdepends ghemical', it is part of several > metapackages, among them education-chemistry. I do not know anything > more about it. Unless there is a "no Qt" policy, I strongly advise to replace ghem

Bug#826069: [Debichem-devel] Bug#826069: libghemical5v5: breaks color rendering and atom generation in ghemical

2017-01-23 Thread Michael Banck
tags 826069 +help thanks On Mon, Jan 23, 2017 at 08:12:53AM +0100, Petter Reinholdtsen wrote: > [Carlo Segre] > > When installed from sid, ghemical will only render in greyscale instead of > > color. In addition, building a molecule atom-by-atom is not functional. > > > > In order to get ghemic

Bug#852077: [Debichem-devel] Bug#852077: [src:libint2] What about packaging basisset definition files?

2017-01-21 Thread Michael Banck
Hi, are you using libint2 yourself, and if so what project if I may ask? On Sat, Jan 21, 2017 at 08:50:10PM +0900, Katsuhiko Nishimra wrote: > As you probably know, libint2 has a feature to setup basisset objects > by the basisset name like code below, using bundled basisset > definition files.

Bug#851546: [Debichem-devel] Bug#851546: [libint2-dev] Please install a pkgconfig metadata file

2017-01-15 Thread Michael Banck
tags 851546 +pending thanks On Mon, Jan 16, 2017 at 01:55:32PM +0900, Katsuhiko Nishimra wrote: > Could you include a pkg-config metadata file > in this package to make builds convinient? > > I'm attaching a tiny patch for this. Thanks for the patch, I've applied it in svn and it will be include

Bug#850613: RM: libtiledarray-dev [armel s390x] -- ROM; newly required build-depends libtbb-dev not ported

2017-01-08 Thread Michael Banck
Package: ftp.debian.org Severity: normal TiledArray now requires TBB, which isn't ported to armel and s390x, so those arches have unsatisfiable Build-Depends. Please remove the old libmadness-dev binaries so the other builds can migrate. Michael

Bug#850612: RM: libmadness-dev [armel s390x] -- ROM; newly required build-depends not ported

2017-01-08 Thread Michael Banck
Package: ftp.debian.org Severity: normal MADNESS now requires TBB, which isn't ported to armel and s390x, so those arches have unsatisfiable Build-Depends. Please remove the old libmadness-dev binaries so the other builds can migrate. Michael

Bug#850456: [Debichem-devel] Bug#850456: elpa: FTBFS (not enough slots available)

2017-01-06 Thread Michael Banck
Hi, On Fri, Jan 06, 2017 at 06:00:17PM +, Santiago Vila wrote: > I tried to build this package in stretch with "dpkg-buildpackage -A" > but it failed: > > > [...] > debian/rules build-arch > dh build-arch >d

Bug#848781: [Debichem-devel] Bug#848781: tiledarray: FTBFS: E: Build killed with signal TERM after 150 minutes of inactivity

2016-12-29 Thread Michael Banck
Hi, On Mon, Dec 19, 2016 at 10:26:11PM +0100, Lucas Nussbaum wrote: > > unknown location(0): fatal error: in > > "distributed_storage_suite/array_operator": memory access violation at > > address: 0x7f53709e95d0: no mapping at fault address > > /<>/tests/distributed_storage.cpp(102): last checkp

Bug#849658: [Debichem-devel] Bug#849658: ga: FTBFS on arm*: src/locks/locks.c:16:1: error: unknown type name 'PAD_LOCK_T'

2016-12-29 Thread Michael Banck
severity 849658 important thanks Hi, On Thu, Dec 29, 2016 at 03:57:34PM +, Chris West (Faux) wrote: > Source: ga > Version: 5.4~beta~r10636+dfsg-3 > Severity: serious > Justification: fails to build from source > Tags: sid stretch > User: reproducible-bui...@lists.alioth.debian.org > Usertags

Bug#849629: tbb: New upstream version available

2016-12-29 Thread Michael Banck
Package: tbb Version: 4.3~20150611-2 Severity: wishlist Dear Maintainer, new upstream versions 4.4 and 2017 (ugh, version number inflation) are available: https://www.threadingbuildingblocks.org/download#stable-releases I have not evaluated either, but filing this bug for your consideration.

Bug#846272: [Debichem-devel] Bug#846272: ga FTBFS on !x86 !ppc: error: unknown type name 'PAD_LOCK_T'

2016-11-30 Thread Michael Banck
severity 846272 important severity 846273 important thanks Hi, On Tue, Nov 29, 2016 at 08:56:55PM +0200, Adrian Bunk wrote: > Severity: serious It is my understanding that non-regression FTBFS errors are not RC, hence important. Thanks, Michael

Bug#843141: [Debichem-devel] Bug#843141: Bug#843141: Bug#843141: src:ga hijacked libga-dev from another package

2016-11-19 Thread Michael Banck
Hi, On Sat, Nov 12, 2016 at 10:56:43PM +0100, Michael Banck wrote: > On Fri, Nov 04, 2016 at 01:11:16PM +0200, Adrian Bunk wrote: > > On Fri, Nov 04, 2016 at 12:37:30PM +0200, Graham Inggs wrote: > > > On 4 November 2016 at 11:47, Adrian Bunk wrote: > > > > libga-d

Bug#840186: [Debichem-devel] Bug#840186: Bug#840186: nwchem builds on amd64 with -march=native

2016-11-18 Thread Michael Banck
Hi, > On Fri, Nov 18, 2016 at 01:18:23AM +, Apra, Edoardo wrote: > > - FOPTIONS += -mtune=native > > + FOPTIONS += -march=native -mtune=native By the way, it seems this patch is reversed, as it adds -march=native. Michael

Bug#840186: [Debichem-devel] Bug#840186: nwchem builds on amd64 with -march=native

2016-11-18 Thread Michael Banck
tags 840186 +patch tags 840186 +pending thanks On Fri, Nov 18, 2016 at 01:18:23AM +, Apra, Edoardo wrote: > The attached patch disables the gfortran flag -march=native. > Same patch can be found at the URL > http://www.nwchem-sw.org/images/Disable_march_native.patch.gz > --- nwchem-6.6/src/co

Bug#843141: [Debichem-devel] Bug#843141: Bug#843141: src:ga hijacked libga-dev from another package

2016-11-12 Thread Michael Banck
Hi, On Sun, Nov 13, 2016 at 12:20:34AM +0200, Adrian Bunk wrote: > On Sat, Nov 12, 2016 at 10:56:43PM +0100, Michael Banck wrote: > > On Fri, Nov 04, 2016 at 01:11:16PM +0200, Adrian Bunk wrote: > > > On Fri, Nov 04, 2016 at 12:37:30PM +0200, Graham Inggs wrote: > > >

Bug#843141: [Debichem-devel] Bug#843141: Bug#843141: src:ga hijacked libga-dev from another package

2016-11-12 Thread Michael Banck
On Fri, Nov 04, 2016 at 01:11:16PM +0200, Adrian Bunk wrote: > On Fri, Nov 04, 2016 at 12:37:30PM +0200, Graham Inggs wrote: > > Hi Adrian > > Hi Graham, > > > On 4 November 2016 at 11:47, Adrian Bunk wrote: > > > libga-dev in Debian is built from of src:galib since 2008, > > > but due to its h

Bug#841096: [Debichem-devel] Bug#841096: espresso: FTBFS (make install fails)

2016-11-12 Thread Michael Banck
Hi Santiago, On Wed, Nov 09, 2016 at 05:38:43PM +0100, Santiago Vila wrote: > The problem seems to be in the install target of the top-level > Makefile, which reads like this: Thanks a lot for tracking this down, I've forwarded it upstream and uploaded a new revision with your patch. Does -3 bui

Bug#837532: [Debichem-devel] Bug#837532: mpqc3: FTBFS (Libint library is too old: a recent beta of 2.1.0 is required)

2016-10-03 Thread Michael Banck
OK, so I've uploaded a new mpqc3 package which excludes the problematic check in external/Libint, but it stills FTBFS - there's been too much APi breakage between beta2 and final apparently and mpqc3 has not been ported yet. Which is kinda annoying cause both are maintained by the same upstream aut

Bug#837532: [Debichem-devel] Bug#837532: mpqc3: FTBFS (Libint library is too old: a recent beta of 2.1.0 is required)

2016-10-01 Thread Michael Banck
Hi, On Fri, Sep 30, 2016 at 12:29:40PM -0700, Steve Langasek wrote: > I've done some analysis of this build failure in Ubuntu, and it appears the > problem is that libint2 is missing some header includes, which causes build > failures of programs trying to include them. (Unfortunately, cmake is n

Bug#837532: [Debichem-devel] Bug#837532: mpqc3: FTBFS (Libint library is too old: a recent beta of 2.1.0 is required)

2016-10-01 Thread Michael Banck
Hi, On Fri, Sep 30, 2016 at 12:29:40PM -0700, Steve Langasek wrote: > I've done some analysis of this build failure in Ubuntu, and it appears the > problem is that libint2 is missing some header includes, which causes build > failures of programs trying to include them. Thanks! > (Unfortunatel

Bug#839389: debhelper: dh_auto_configure for cmake should dump out CMakeError.log on failure

2016-10-01 Thread Michael Banck
Package: debhelper Version: 10 Severity: wishlist if cmake fails during dh_auto_configure, the CMake cache is dumped; however, in order to diagnose e.g. failed test compile/runs, the error and (maybe) output files would also be required: -- Configuring incomplete, errors occurred! See also "/<>/o

Bug#839387: libopenmpi2: Programs crash if run under fakeroot

2016-10-01 Thread Michael Banck
On Sat, Oct 01, 2016 at 12:34:02PM +0200, Michael Banck wrote: > |(unstable-amd64-sbuild)mba@hartree:/$ OMPI_MCA_orte_rsh_agent=/bin/false > |fakeroot pw.x The same happens if I wrap it around mpirun --allow-run-as-root btw: |(unstable-amd64-sbuild)mba@hartree:/$ OMPI_MCA_orte_rsh_agen

Bug#839387: libopenmpi2: Programs crash if run under fakeroot

2016-10-01 Thread Michael Banck
Package: libopenmpi2 Severity: important Version: 2.0.1-5 Hi, if I run a program linked to OpenMPI's libmpi under fakeroot, it crashes: |(unstable-amd64-sbuild)mba@hartree:/$ OMPI_MCA_orte_rsh_agent=/bin/false |pw.x | | Program PWSCF v.5.4.0 starts on 1Oct2016 at 10:29:47 | | This progr

Bug#837915: aster: FTBFS due to install failures

2016-09-25 Thread Michael Banck
Hi, as I just diagnosed this for a different package: the problem appears to be that mpirun is run during binary-arch, i.e. under fakeroot. Latest openmpi does not like that apparenlty and crashes. Not sure how to fix it for aster as apparently building the elements catalog is part of the upstrea

Bug#837914: esys-particle: FTBFS due to test failures

2016-09-25 Thread Michael Banck
Hi, as I just diagnosed this for a different package: the problem appears to be that mpirun is run during binary-arch, i.e. under fakeroot. Latest openmpi does not like that apparenlty and crashes. So the tests should be run as part of the build-arch or build-indep targets. Michael

Bug#838733: [Debichem-devel] Bug#838733: experimental version of avogadro FTBFS on armel and armhf

2016-09-25 Thread Michael Banck
Hi Peter, On Sun, Sep 25, 2016 at 12:30:02AM +0100, peter green wrote: > I got it to build, debdiff attatched, no intent to NMU. Thanks, I've uploaded it. Michael

Bug#838733: [Debichem-devel] Bug#838733: experimental version of avogadro FTBFS on armel and armhf

2016-09-24 Thread Michael Banck
Hi Peter, On Sat, Sep 24, 2016 at 03:19:53AM +0100, peter green wrote: > package: avogadro > version: 1.1.1-1~exp3.1 > severity: serious > X-Debbugs-CC: po...@debian.org, gl...@debian.org, gin...@debian.org, > mba...@debian.org > > While discussing possible soloutions to bug 833770 Graham Inggs s

Bug#838299: [Debichem-devel] Bug#838299: Bug#838299: Bug#838299: espresso: FTBFS on various arches: test suite hangs

2016-09-21 Thread Michael Banck
tags 838299 -pending thanks Hi, On Tue, Sep 20, 2016 at 09:23:03PM +0200, Michael Banck wrote: > I've committed a patch to svn just now to run their python script in > verbose mode, which should at least address this; Unfortunately, test builds of this showed it running the testsu

Bug#838299: [Debichem-devel] Bug#838299: Bug#838299: espresso: FTBFS on various arches: test suite hangs

2016-09-20 Thread Michael Banck
tags 838299 +pending thanks Hi, On Tue, Sep 20, 2016 at 07:07:18PM +0200, Graham Inggs wrote: > On 20 September 2016 at 16:03, Emilio Pozuelo Monfort > wrote: > > I gave it back on armhf/mips* and it failed again. This time with > > libopenmpi2: > > > > https://buildd.debian.org/status/package

Bug#823803: [Debichem-devel] NMU for libint2 : FTBFS (blocking openmpi transition)

2016-09-12 Thread Michael Banck
Hi, On Mon, Sep 12, 2016 at 11:07:59AM +0100, Alastair McKinstry wrote: > I've uploaded an NMU for libint2 to fix a FTBFS that was blocking the > openmpi2 transition. > > Please find the debdiff attached. According to your changelog, the debdiff appears to be backwards, or am I reading it wrong?

Bug#822501: [Debichem-devel] Bug#822501: bagel: FTBFS: error: 'inner_product' is not a member of 'std'

2016-05-03 Thread Michael Banck
tags 822501 +pending thanks On Sun, Apr 24, 2016 at 06:16:10PM -0700, Martin Michlmayr wrote: > This package fails to build in unstable: > > > sbuild (Debian sbuild) 0.68.0 (15 Jan 2016) on dl580gen9-02.hlinux > ... > > libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../../.. -I../../.. -g -O2 >

Bug#818432: [Debichem-devel] Bug#818432: espresso: FTBFS on armel and mips: hangs during the build

2016-05-02 Thread Michael Banck
Hi Aurelien, On Mon, May 02, 2016 at 05:35:35PM +0200, Aurelien Jarno wrote: > control: retitle -1 espresso: FTBFS on armel: hangs during the build > > On 2016-03-17 00:49, Emilio Pozuelo Monfort wrote: > > Source: espresso > > Version: 5.1+dfsg-4 > > Severity: serious > > > > Your package faile

Bug#820016: [Debichem-devel] Bug#820016: gabedit: please make the build reproducible (fileordering)

2016-04-07 Thread Michael Banck
tags 820016 +pending thanks Hi, On Mon, Apr 04, 2016 at 09:43:36PM +0200, Alexis Bienvenüe wrote: > While working on the “reproducible builds” effort [1], we have noticed > that 'gabedit' could not be built reproducibly. > > The attached patch sorts object files while building the final gabedit

Bug#816699: [Debichem-devel] Bug#816699: libga-dev and libarmci-mpi-dev: error when trying to install together

2016-03-04 Thread Michael Banck
Hi, On Fri, Mar 04, 2016 at 06:30:01AM +0100, Ralf Treinen wrote: > automatic installation tests of packages that share a file and at the > same time do not conflict by their package dependency relationships has > detected the following problem: > > > Selecting previously unselected package liba

Bug#816590: [Debichem-devel] Bug#816590: elpa: still FTBFS on mipsel/powerpc

2016-03-03 Thread Michael Banck
Hi, On Thu, Mar 03, 2016 at 10:10:41AM +0100, Emilio Pozuelo Monfort wrote: > Source: elpa > Version: 2015.05.001-6 > Severity: serious > > Your package failed to build on mipsel/powerpc: > > Build killed with signal TERM after 150 minutes of inactivity > > Logs at https://buildd.debian.org/sta

Bug#816347: blacs-mpi: run testsuite

2016-02-29 Thread Michael Banck
;t try it. Michael diff -u blacs-mpi-1.1/debian/changelog blacs-mpi-1.1/debian/changelog --- blacs-mpi-1.1/debian/changelog +++ blacs-mpi-1.1/debian/changelog @@ -1,3 +1,10 @@ +blacs-mpi (1.1-33.4) UNRELEASED; urgency=medium + + * Non-maintainer upload. + * Run testsuite + + -- Michael Banck Tu

Bug#815837: armci-mpi -- ARMCI-compatible implemntation using MPI RMA

2016-02-24 Thread Michael Banck
Package: wnpp Severity: wishlist Owner: Debian Science Team * Package name: armci-mpi Version : 0.0 Upstream Author : The ARMCI-MPI Team at Argonne National Laboratory * URL : https://wiki.mpich.org/armci-mpi/index.php/Main_Page * License : OpenMPI license Pr

Bug#815718: ITP: mpi-testsuite -- testsuite for MPI implementations

2016-02-23 Thread Michael Banck
Package: wnpp Severity: wishlist Owner: Michael Banck * Package name: mpi-testsuite Version : 3.2 Upstream Author : The MPICH Team at Argonne National Laboratory * URL : http://trac.mpich.org/projects/mpich/browser/test/mpi * License : MPICH license

Bug#815623: mpich: Description should mention MPI-3 and possibly MPI_THREAD_MULTIPLE

2016-02-22 Thread Michael Banck
Package: mpich Version: 3.2-6 Severity: wishlist Hi, The MPICH package description still says "implementation of the Message Passing Interface (MPI) standard (both MPI-1 and MPI-2)". However, as of some time now I think, MPICH supports MPI-3 as well. As an extra kick against OpenMPI, it could a

Bug#815348: [Debichem-devel] Bug#815348: nwchem: FTBFS on mips, s390x: testsuite timeout

2016-02-20 Thread Michael Banck
Hi, On Sun, Feb 21, 2016 at 12:02:50AM +0100, Andreas Beckmann wrote: > Source: nwchem > Version: 6.6+r27746-2 > Severity: serious > Justification: fails to build from source (but built successfully in the past) > > Hi, > > nwchem FTBFS on mips and s390x: > > https://buildd.debian.org/status/fe

Bug#813722: [Debichem-devel] Bug#813722: Bug#813722: aces3: FTBFS on powerpc

2016-02-12 Thread Michael Banck
On Fri, Feb 12, 2016 at 07:27:59PM +0200, Graham Inggs wrote: > On 8 February 2016 at 23:31, Michael Banck wrote: > > Hi, > > > > On Mon, Feb 08, 2016 at 11:26:17PM +0200, Graham Inggs wrote: > >> On 4 February 2016 at 19:52, Mattia Rizzolo wrote: > >>

Bug#814538: python-dev: python-config --libs does not include -lz

2016-02-12 Thread Michael Banck
Package: python-dev Version: 2.7.11-1 Severity: normal Dear Maintainer, 13:54 < azeem> /usr/bin/ld: /usr/lib/python2.7/config-x86_64-linux-gnu/libpython2.7.a(zlibmodule.o): undefined reference to symbol 'inflateInit2_' 13:55 < azeem> sorry, that's my current attempt at a new nwchem upload 13:56 <

Bug#813722: [Debichem-devel] Bug#813722: Bug#813722: aces3: FTBFS on powerpc

2016-02-08 Thread Michael Banck
Hi, On Mon, Feb 08, 2016 at 11:26:17PM +0200, Graham Inggs wrote: > On 4 February 2016 at 19:52, Mattia Rizzolo wrote: > > your package FTBFS on powercpc on the buildds. > > The same happens with petsc, as soon as the mpi test programs are > launched they use 100% cpu and stop responding. > See

Bug#814130: [Debichem-devel] Bug#814130: mpqc3: FTBFS (32-bit): sc::MessageGrp::sum cannot be overloaded

2016-02-08 Thread Michael Banck
forwarded 814130 https://github.com/ValeevGroup/mpqc/issues/45 thanks Hi, On Mon, Feb 08, 2016 at 11:32:02AM -0500, Aaron M. Ucko wrote: > Source: mpqc3 > Version: 0.0~git20150911-1 > Severity: important > Justification: fails to build from source > > Builds of mpqc3 for 32-bit platforms such as

Bug#814129: [Debichem-devel] Bug#814129: elpa: FTBFS on x32: cannot find -lblacs-mpich et al.

2016-02-08 Thread Michael Banck
Hi, On Mon, Feb 08, 2016 at 11:27:34AM -0500, Aaron M. Ucko wrote: > Source: elpa > Version: 2015.05.001-1 > Severity: important > Justification: fails to build from source > > The x32 build of elpa failed: > > /usr/bin/ld: cannot find -lblacs-mpich > /usr/bin/ld: cannot find -lblacsCinit-mp

Bug#813799: [Debichem-devel] Bug#813799: cp2k FTBFS with openmpi1.10

2016-02-07 Thread Michael Banck
Hi, On Sun, Feb 07, 2016 at 12:35:44AM +, Mattia Rizzolo wrote: > control: severity -1 serious > control: block 813128 by -1 > > On Fri, Feb 05, 2016 at 01:09:39PM +0100, Michael Banck wrote: > > On Fri, Feb 05, 2016 at 11:16:26AM +, Alastair McKinstry wrote: > &g

Bug#813799: [Debichem-devel] Bug#813799: cp2k FTBFS with openmpi1.10

2016-02-05 Thread Michael Banck
tags 813799 +patch thanks Hi, On Fri, Feb 05, 2016 at 11:16:26AM +, Alastair McKinstry wrote: > CP2K fails to build with openmpi1.10. A patch is attached. Thanks for the patch, I've attaced it in svn. However, it was not adding pkg-config to Build-Depends, did you test it in a clean chroot

Bug#813551: blacs-mpi: please enable test suite during build

2016-02-02 Thread Michael Banck
Package: blacs-mpi Version: 1.1-33.1 Severity: wishlist Tags: patch Hi, while blacs ships a package with the test suite, I think it is crucial to also run the test suite during package build in order to catch issues on unpopular architectures for example. One issue is that you need at least 4 pr

Bug#813128: Fwd: Bug#813128: transition: openmpi

2016-02-02 Thread Michael Banck
On Tue, Feb 02, 2016 at 02:40:11PM +, Mattia Rizzolo wrote: > On Tue, Feb 02, 2016 at 08:44:46AM +0100, Alastair McKinstry wrote: > > On 01/02/2016 16:34, Michael Banck wrote: > > > On Mon, Feb 01, 2016 at 11:41:17AM +, Alastair McKinstry wrote: > > >> Its

Bug#813490: Bug #813490: blacs-mpi: patch for blacs-mpi to build with openmpi1.10

2016-02-02 Thread Michael Banck
On Wed, Feb 03, 2016 at 01:25:46AM +0100, Michael Banck wrote: > the patch is missing a Build-Depends for pkg-config. Note that > debian/control is auto-generated so it needs to be added to > debian/control.in. And the debian/rules hunk is missing a semicolon at the end. Michael

Bug#813490: Bug #813490: blacs-mpi: patch for blacs-mpi to build with openmpi1.10

2016-02-02 Thread Michael Banck
Hi, the patch is missing a Build-Depends for pkg-config. Note that debian/control is auto-generated so it needs to be added to debian/control.in. Michael

Bug#813128: Fwd: Bug#813128: transition: openmpi

2016-02-02 Thread Michael Banck
On Wed, Feb 03, 2016 at 12:09:18AM +0100, Michael Banck wrote: > On Tue, Feb 02, 2016 at 12:19:10AM +0100, Matthias Klose wrote: > > On 01.02.2016 15:38, Emilio Pozuelo Monfort wrote: > > >On 01/02/16 12:41, Alastair McKinstry wrote: > > >> > > >>The uploa

Bug#813128: Fwd: Bug#813128: transition: openmpi

2016-02-02 Thread Michael Banck
On Tue, Feb 02, 2016 at 12:19:10AM +0100, Matthias Klose wrote: > On 01.02.2016 15:38, Emilio Pozuelo Monfort wrote: > >On 01/02/16 12:41, Alastair McKinstry wrote: > >> > >>The upload of openmpi1.10 triggered an auto-openmpi transition, as > >>expected and wanted. > >>The rest, is premature. > > >

Bug#813128: Fwd: Bug#813128: transition: openmpi

2016-02-01 Thread Michael Banck
Hi, On Mon, Feb 01, 2016 at 11:41:17AM +, Alastair McKinstry wrote: > The upload of openmpi1.10 triggered an auto-openmpi transition, as > expected and wanted. > The rest, is premature. > > Its not fully ready for transition, and I need to put a blocker on it. > Small fixes for kFreeBSD, Hurd

Bug#807229: [Debichem-devel] Bug#807229: votca-tools: diff for NMU version 1.2.4-1.1

2016-01-28 Thread Michael Banck
Hi, On Tue, Jan 26, 2016 at 10:42:36AM +, Mattia Rizzolo wrote: > I've prepared an NMU for votca-tools (versioned as 1.2.4-1.1) and > uploaded it to DELAYED/2. Please feel free to tell me if I > should delay it longer. Well, thanks for fixing that bug, but there's an upload for the GCC5 trans

Bug#807229: [Debichem-devel] Bug#807229: votca-tools: diff for NMU version 1.2.4-1.1

2016-01-28 Thread Michael Banck
On Thu, Jan 28, 2016 at 02:43:45PM +, Mattia Rizzolo wrote: > On Thu, Jan 28, 2016 at 03:35:11PM +0100, Michael Banck wrote: > > On Tue, Jan 26, 2016 at 10:42:36AM +, Mattia Rizzolo wrote: > > > I've prepared an NMU for votca-tools (versioned as 1.2.4-1.1) and >

Bug#797379: system upgrade by systemd

2016-01-20 Thread Michael Banck
On Wed, Jan 20, 2016 at 05:26:47PM +0100, Michael Biebl wrote: > Am 20.01.2016 um 16:48 schrieb Michael Biebl: > > Am 20.01.2016 um 16:05 schrieb Michael Biebl: > >> On Sun, 30 Aug 2015 10:30:54 +0200 Michael Banck wrote: > >>> But in general I think we want that

Bug#811449: [Debichem-devel] Bug#811449: bagel: FTBFS: size_t is assumed to be the same size as long long

2016-01-19 Thread Michael Banck
severity 811449 important thanks Hi Aaron, On Mon, Jan 18, 2016 at 08:59:30PM -0500, Aaron M. Ucko wrote: > Builds of bagel for 32-bit architectures such as i386 have been failing: > > mpi_interface.cc: In member function 'int > bagel::MPI_Interface::iallreduce(size_t*, size_t)': > mpi_inte

Bug#703256: moving the gridengine team repository to collab-maint

2015-12-23 Thread Michael Banck
Hi, On Tue, Dec 22, 2015 at 05:09:43PM -0800, Afif Elghraoui wrote: > As I've made numerous requests on this list [1-3] and tried twice to > directly contact Michael Banck, one of the two Alioth team admins > (both of them CC'd here this time), regarding membership on the tea

Bug#806612: [Debichem-devel] Bug#806612: cp2k: FTBFS when built with dpkg-buildpackage -A (different version of GNU Fortran)

2015-11-30 Thread Michael Banck
On Sun, Nov 29, 2015 at 09:49:44PM +0100, Santiago Vila wrote: > On Sun, Nov 29, 2015 at 07:25:32PM +0100, Michael Banck wrote: > > > Even if your package is not directly to blame, I think it is important > > > to know how this happened and ensure that it will be fixed. > &

Bug#806612: [Debichem-devel] Bug#806612: cp2k: FTBFS when built with dpkg-buildpackage -A (different version of GNU Fortran)

2015-11-29 Thread Michael Banck
Hi, On Sun, Nov 29, 2015 at 07:06:51PM +0100, Santiago Vila wrote: > On Sun, Nov 29, 2015 at 06:53:24PM +0100, Michael Banck wrote: > > Hi Santiago, > > > > On Sun, Nov 29, 2015 at 04:22:14PM +, Santiago Vila wrote: > > > Package: src:cp2k > >

Bug#806612: [Debichem-devel] Bug#806612: cp2k: FTBFS when built with dpkg-buildpackage -A (different version of GNU Fortran)

2015-11-29 Thread Michael Banck
Hi Santiago, On Sun, Nov 29, 2015 at 04:22:14PM +, Santiago Vila wrote: > Package: src:cp2k > Version: 2.6.1-2 > User: sanv...@debian.org > Usertags: binary-indep > Severity: important > > Dear maintainer: > > I tried to build this package with "dpkg-buildpackage -A" > (i.e. only architectur

Bug#805739: RM: psi4 [mips] -- RoM; buildd not able to build

2015-11-21 Thread Michael Banck
Package: ftp-master.debian.org Severity: normal RM: psi4 [mips] -- RoM; the mips autobuilders lack hardware FPUs and are not able to run the testsuite without running into timeouts Michael

Bug#775362: [Debichem-devel] Bug#775362: ergo: FTBFS on ppc64el: test suite failure

2015-11-21 Thread Michael Banck
Hi, On Thu, Sep 03, 2015 at 10:55:15PM +0200, Julien Cristau wrote: > Control: severity -1 serious > > On Wed, Jan 14, 2015 at 17:47:20 +, Fernando Seiti Furusato wrote: > > > Source: ergo > > Severity: normal > > Tags: patch > > User: debian-powe...@lists.debian.org > > Usertags: ppc64el >

Bug#802030: [Debichem-devel] Bug#802030: psi4 FTBFS on mips, testsuite timeout

2015-10-18 Thread Michael Banck
Hi, On Sun, Oct 18, 2015 at 12:44:42PM +0100, peter green wrote: > On 18/10/15 11:38, Michael Banck wrote: > >I don't think it's a problem with psi4 (so I am closing this bug for > >now), > Note that this needs to be dealt with one way or another before your >

Bug#786355: [Debichem-devel] Bug#786355: Avogadro update

2015-09-26 Thread Michael Banck
Hi, On Sat, Sep 26, 2015 at 07:15:32PM +0200, Anton Gladky wrote: > in attachment there is an updated eigen3.patch for the > avogadro_1.0.3-12. Cool! > It would be good to upload it as soon as possible (If you want, I can > even NMU it). No need to NMU, just add yourself to Uploaders or (if y

Bug#786355: [Debichem-devel] Bug#786355: Bug#786355: Avogadro update

2015-09-26 Thread Michael Banck
Hi, On Sat, Sep 26, 2015 at 01:36:16PM +0200, Michael Banck wrote: > The version in experimental ist still a prerelease, so I don't think > that is appropriate for Debian, but I'll check back with upstream now. According to upstream they might release 1.2 real soon now, so I&#x

Bug#786355: [Debichem-devel] Bug#786355: Avogadro update

2015-09-26 Thread Michael Banck
Hi, On Sat, Sep 26, 2015 at 08:12:37AM +0200, Anton Gladky wrote: > I want to move a version of eigen3 from experimental to > unstable, not to let any new packages use the deprecated > EIGEN2_SUPPORT interface. > > avogadro is the only package in unstable which is using such > interface. Is it OK

Bug#790859: [Debichem-devel] Bug#790859: avogadro: Patch for FTBFS against updated cmake

2015-09-17 Thread Michael Banck
tags 790859 -pending thanks On Thu, Sep 17, 2015 at 11:12:37AM +0200, Michael Banck wrote: > Hi Niels, > > On Thu, Sep 17, 2015 at 08:01:52AM +0200, Niels Thykier wrote: > > On Tue, 11 Aug 2015 12:19:46 +0100 Andy Whitcroft > > wrote: > > > Package: a

Bug#790859: avogadro: Patch for FTBFS against updated cmake

2015-09-17 Thread Michael Banck
Hi Niels, On Thu, Sep 17, 2015 at 08:01:52AM +0200, Niels Thykier wrote: > On Tue, 11 Aug 2015 12:19:46 +0100 Andy Whitcroft wrote: > > Package: avogadro > > Version: 1.1.0-4 > > Followup-For: Bug #790859 > > User: ubuntu-de...@lists.ubuntu.com > > Usertags: origin-ubuntu wily ubuntu-patch > > >

Bug#732080: cmake: Boost is now multiarched

2015-09-13 Thread Michael Banck
Hi, FWIW, I can reproduce the problem from one project I am packaging with the following minimal CMakeLists.txt: set(BOOST_ROOT ${BOOST}) set(Boost_NO_SYSTEM_PATHS TRUE) set(Boost_DETAILED_FAILURE_MSG TRUE) find_package(Boost 1.48 COMPONENTS thread system ) Without the patch: mbanck@lightning:/

Bug#786355: [Debichem-devel] Bug#786355: Avogadro update

2015-09-09 Thread Michael Banck
Hi Anton, On Wed, Sep 09, 2015 at 08:45:34PM +0200, Anton Gladky wrote: > I have prepared a patch, which fixes #786355. This bug is > getting almost critical, because the newer eigen3 version > with dropped eigen2-support was released as > alpha-version (in experimental already). > > I have also

Bug#798414: [debhelper-devel] Bug#798414: debhelper: empty support file should imply no-op

2015-09-09 Thread Michael Banck
On Wed, Sep 09, 2015 at 07:48:43AM +0200, Niels Thykier wrote: > Control: tags -1 moreinfo > > On 2015-09-09 00:52, Michael Banck wrote: > > Package: debhelper > > Version: 9.20150101 > > Severity: wishlist > > > > Dear Maintainer, > > > >

Bug#798414: debhelper: empty support file should imply no-op

2015-09-08 Thread Michael Banck
Package: debhelper Version: 9.20150101 Severity: wishlist Dear Maintainer, I had the case of one upstream package shipping a useless ChangeLog file (basically having "check Github" as content). dh_installchangelogs installs this file automatically, unless I manually intervene. The only way to d

Bug#798246: [Debichem-devel] Bug#798246: madness: please allow parallel building

2015-09-07 Thread Michael Banck
tags 798246 +pending thanks Hi, On Mon, Sep 07, 2015 at 06:04:31PM +0800, Aron Xu wrote: > Since it takes quite some time to build madness, it's nice to allow > parallel building to make use of multi-core systems, attached patch is > using the Debian recommended way which will honor the > DEB_BUI

Bug#797798: ITP: bagel -- Computational Chemistry Package

2015-09-02 Thread Michael Banck
Package: wnpp Severity: wishlist Owner: Debichem Team * Package name: bagel Version : (git snapshot) Upstream Author : Shiozaki Group, Northwestern University * URL : http://www.nubakery.org/ * License : GPL3+ Programming Lang: C++ Description : Computa

Bug#753001: Bug #753001: openmpi: New upstream version 1.8 available

2015-09-02 Thread Michael Banck
Alastair, now that you took over maintainership and started fixing bugs in unstable, will you update OpenMPI to 1.8 soon? Michael

Bug#797400: ITP: dl-poly-classic -- General purpose molecular dynamics simulation package

2015-08-30 Thread Michael Banck
Package: wnpp Severity: wishlist Owner: Debichem Team * Package name: dl-poly-classic Version : 1.9 Upstream Author : W. Smith, T.R. Forester and I.T. Todorov * URL : http://www.ccp5.ac.uk/DL_POLY_CLASSIC/ * License : BSD Programming Lang: Fortran/Java Desc

Bug#797379: system upgrade by systemd

2015-08-30 Thread Michael Banck
Package: network-manager Severity: wishlist On Sun, Aug 30, 2015 at 06:46:24AM +0200, Michael Meskes wrote: > > It’s gnome-software in sid, or g-s-d in jessie, querying PackageKit for > > updates. > > The default policy is to not schedule any downloads when running on > > battery or on a modem con

Bug#714730: gfortran: handling binNMU for .mod file format change

2015-08-21 Thread Michael Banck
Hi, I had a look at your dh-fortran-mod package, and am quite sorry I missed this until now :-/ I assume this is meant for ${misc:Depends} in the -dev package, right? On Wed, Mar 12, 2014 at 06:44:50PM +0100, Sébastien Villemot wrote: > Le dimanche 11 août 2013 à 11:11 +0900, Ryo IGARASHI a écri

Bug#795110: ITP: plumed -- Free Energy Module for Molecular Dynamics Packages

2015-08-10 Thread Michael Banck
Package: wnpp Severity: wishlist Owner: Debichem Team * Package name: plumed Version : 2.1.3 Upstream Author : The plumed team * URL : http://www.plumed-code.org/ * License : LGPLv2+ Programming Lang: C++ Description : Free Energy Module for Molecular D

Bug#794695: ITP: tiledarray -- Block-Sparse Tensor Library

2015-08-05 Thread Michael Banck
Package: wnpp Severity: wishlist Owner: Debichem Team * Package name: tiledarray Version : 0.4.3-alpha Upstream Author : Valeev Group (Virginia Tech) * URL : https://github.com/ValeevGroup/tiledarray * License : GPLv3+ Programming Lang: C++ header files Des

Bug#793345: hyphy: FTBFS on hurd-i386: cannot find -lc_p

2015-07-23 Thread Michael Banck
Hi, On Thu, Jul 23, 2015 at 01:16:59PM +0200, Andreas Tille wrote: > Hi Michael, > > On Thu, Jul 23, 2015 at 12:55:15PM +0200, Michael Banck wrote: > > > > The hurd-i386 build of hyphy failed: > > > > > > > > /usr/bin/c++ -g -O2 -fstack-prot

Bug#793345: hyphy: FTBFS on hurd-i386: cannot find -lc_p

2015-07-23 Thread Michael Banck
Hi, On Thu, Jul 23, 2015 at 12:45:50PM +0200, Andreas Tille wrote: > On Wed, Jul 22, 2015 at 10:33:31PM -0400, Aaron M. Ucko wrote: > > Source: hyphy > > Version: 2.2.5+dfsg-1 > > Severity: important > > > > The hurd-i386 build of hyphy failed: > > > > /usr/bin/c++ -g -O2 -fstack-protector-s

Bug#765794: [Debichem-devel] Bug#765794: Race condition when running scripts in "stdin" mode

2015-06-13 Thread Michael Banck
forwarded 765794 http://sourceforge.net/p/pymol/bugs/130/ thanks Hi Vincent, On Sat, Oct 18, 2014 at 09:32:37AM +0200, Vincent Fourmond wrote: > Unfortunately, pymol is polling from stdin DURING the reading of > scripts from within a @ command, which leads to painful race > conditions, as I'm w

Bug#785192: rdkit: new upstream version 2015.03.1 available

2015-05-13 Thread Michael Banck
Package: rdkit Severity: wishlist See https://github.com/rdkit/rdkit/releases/tag/Release_2015_03_1 Michael -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org

Bug#783653: pymol: Segmentation fault immediately after loading pdb

2015-04-30 Thread Michael Banck
Hi, On Thu, Apr 30, 2015 at 01:22:28PM -0400, Michael Beck wrote: > Detected OpenGL version 2.0 or greater. Shaders available. > Detected GLSL version 1.30. > OpenGL graphics engine: > GL_VENDOR: VMware, Inc. > GL_RENDERER: Gallium 0.4 on llvmpipe (LLVM 3.5, 256 bits) > GL_VERSION: 3.0

Bug#783653: pymol: Segmentation fault immediately after loading pdb

2015-04-30 Thread Michael Banck
tags 783653 +unreproducible thanks Hi, On Tue, Apr 28, 2015 at 02:57:55PM -0400, nbx909 wrote: > Package: pymol > Version: 1.7.2.1-1 > Severity: important > > Dear Maintainer, > > Loading a pdb manually or through the fetch command immediately results in a > segmentation fault and pymol closes.

Bug#781555: summit.debconf.org: adding additional speakers is cumbersome and errorprone

2015-03-30 Thread Michael Banck
Package: summit.debconf.org Severity: normal Hi, as a content team member, one can edit additional speakers via the "Edit Meeting" form. However, the UI is a simple multi-select, and it seems very easy to remove existing speakers from it. This is the same for the admin UI view. I think it woul

Bug#781553: summit.debconf.org: event submissions leads to creator not listed as speaker

2015-03-30 Thread Michael Banck
Package: summit.debconf.org Severity: normal Right now, if somebody submits an events, they are not listed as speaker on the URL, e.g. (as of right now): https://summit.debconf.org/debconf15/meeting/184/reproducible-builds-roundtable-discussing-the-changes-needed-for-officially-reproducible-build

Bug#781394: error on registration should result in a clear message at top of page with pointer to problems below

2015-03-28 Thread Michael Banck
Package: summit.debconf.org Version: current Severity: normal We had a report that errors on registration are not visible enough for the people who register. As somebody who registers for the first time has no idea what the "success" page looks like, the "failure page" should be clearer about this

Bug#719330: [Debichem-devel] Bug#776662: Going forward with jmol in debian

2015-03-15 Thread Michael Banck
Hi, On Sun, Mar 15, 2015 at 09:27:27AM +0100, Julien Puydt wrote: > we need the new jmol for the sagemath packaging effort ; > unfortunately, none of us has any clue how to package java code. > > From looking at the sources, upstream is using the classical "ant" > builder, so I guess on the other

Bug#779827: [Debichem-devel] Bug#779827: elpa: FTBFS could not link with blacs (Ubuntu)

2015-03-05 Thread Michael Banck
Hi, On Thu, Mar 05, 2015 at 12:02:48PM +0200, Graham Inggs wrote: > Hi maintainer > > Elpa FTBFS on Ubuntu builders as it fails the blacs link test in > configure with the following output: > > configure:6376: checking for library containing blacs_gridinit > configure:6394: mpif90 -o conftest -g

Bug#776662: [Debichem-devel] Bug#776662: jmol: Please upgrade Jmol to v13

2015-01-30 Thread Michael Banck
Hi, On Fri, Jan 30, 2015 at 06:24:37PM +, olivier sallou wrote: > Could you please upgrade jmol to latest version (v13.x), I need a more > recent version for up-to-come biojava package. Last time I looked I had an argument with JMol upstream about how to get their additional java add-on packa

Bug#772172: unblock: debichem/0.0.4

2014-12-08 Thread Michael Banck
tags 772172 -moreinfo retitle 772172 "unblock: debichem/0.0.5" thanks On Sat, Dec 06, 2014 at 06:06:17PM +0100, Ivo De Decker wrote: > On Fri, Dec 05, 2014 at 08:26:43PM +0100, Michael Banck wrote: > > Please unblock package debichem > > This part is not appropriate:

Bug#772172: unblock: debichem/0.0.4

2014-12-05 Thread Michael Banck
log --- debichem-0.0.3/debian/changelog 2013-02-24 17:46:12.0 +0100 +++ debichem-0.0.4/debian/changelog 2014-12-05 16:45:46.0 +0100 @@ -1,3 +1,31 @@ +debichem (0.0.4) unstable; urgency=medium + + [ Michael Banck ] + * tasks/abinitio: Added psi4. + * tasks/crystallo

Bug#770461: upowerd become crazy after plug in my laptop

2014-12-04 Thread Michael Banck
Hi, On Thu, Dec 04, 2014 at 11:37:48AM +0100, Tomas Pospisek wrote: > Has anybody asked them yet to let 0.99.1-3.1 propagate to jessie? Well, I had a look at it the other day but then noticed that our awesome-as-usual release team had already put an unblock request into place, see https://package

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