Bug#968615: RFS: golang-github-emersion-go-smtp-dev/0.13.0-1 -- SMTP library for Go

2021-08-23 Thread Nilesh Patra
On Tue, 24 Aug 2021 01:10:19 +0530 Nilesh Patra wrote: > $ cat go.mod | grep go-smtp > github.com/emersion/go-smtp v0.12.1 > > go.mod points at 0.12.1, maybe 0.13.0 would be pretty harmless as well. > But for now, I uploaded 0.12.1 and uploaded > > Closing this for now, f

Bug#991108: letterize -- adding autopkgtests

2021-08-20 Thread Nilesh Patra
Hi Hugo, Gentle ping for this bug and #991105? Could you please check them an upload these? I admit, I'll be doing a NMU if you are busy, and do not hear back from you until a week or so Hope that is fine Nilesh signature.asc Description: PGP signature

Bug#992461: qa.debian.org: [udd] upload_date and date stalled

2021-08-19 Thread Nilesh Patra
ronjob that takes care of this issue (upload_date) yet? Thanks for your work! [1]: https://lists.debian.org/debian-qa/2021/08/msg7.html Nilesh signature.asc Description: PGP signature

Bug#987572: FTCBFS: unsatisfiable python3-sphinx dependency

2021-08-18 Thread Nilesh Patra
On Wed, 18 Aug, 2021, 7:15 pm Jonas Smedegaard, wrote: > Quoting Nilesh Patra (2021-08-18 15:08:29) > > On Mon, 26 Apr 2021 02:29:45 +0530 Nilesh Patra > wrote: > > > Package: biboumi > > > Version: 9.0-2 > > > Severity: normal > > > X-Debbugs-Cc

Bug#987572: FTCBFS: unsatisfiable python3-sphinx dependency

2021-08-18 Thread Nilesh Patra
On Mon, 26 Apr 2021 02:29:45 +0530 Nilesh Patra wrote: > Package: biboumi > Version: 9.0-2 > Severity: normal > X-Debbugs-Cc: nil...@debian.org, nil...@debian.org, > debian-cr...@lists.debian.org > Hi Vasudev, Hi Michel, gentle ping on this? Could you please apply thi

Bug#968576: RFS: golang-github-emersion-go-message-dev/0.12.0-1 -- dependency of aerc 0.4.0

2021-08-18 Thread Nilesh Patra
On Tue, 01 Jun 2021 08:02:43 +0200 Tobias Frost wrote: > On Fri, 9 Apr 2021 00:41:35 +0530 Nilesh Patra wrote: > > Hi Ben, > (...) > > It has been a while, but do you still need sponsoring for this? If yes, > > I'm willing to do so. > > > > PS

Bug#991749: unblock: ruby-maven-libs/3.3.9+ds-2

2021-08-03 Thread Nilesh Patra
gelog states inclusion of d/salsa-ci.yml, but the package did not include it, I added two lines of this file, which should be absolutely harmless by all metrics. Thanks a lot for your work on the release :-) Nilesh diff -Nru ruby-maven-libs-3.3.9+ds/debian/changelog ruby-maven-libs-3.3.9+ds/debia

Bug#991841: unblock: perm/0.4.0-6

2021-08-03 Thread Nilesh Patra
ly sorry about this -- it was discovered just yesterday, and I uploaded after enough ACKs as soon as I found a relevant workaround. But I'd be obliged if you consider to let this in. Nilesh diff -Nru perm-0.4.0/debian/changelog perm-0.4.0/debian/changelog --- perm-0.4.0/debian/changelog 20

Bug#991841: unblock: perm/0.4.0-6

2021-08-02 Thread Nilesh Patra
stall test data as example + * d/docs: Install d/README.* and d/tests/run-unit-test +as documents + * d/p/hardening.patch: Add CPPFLAGS which helped detect +buffer overflow + * d/copyright: Test data has been written by Shruti, mentioning +them in copyright for the same + + [ Nilesh

Bug#991742: ITP: r-cran-gprofiler2 -- Interface to the 'g:Profiler' Toolset

2021-07-31 Thread Nilesh Patra
Package: wnpp Severity: wishlist X-Debbugs-Cc: nil...@debian.org Subject: ITP: r-cran-gprofiler2 -- Interface to the 'g:Profiler' Toolset Package: wnpp Owner: Nilesh Patra Severity: wishlist * Package name: r-cran-gprofiler2 Version : 0.2.0 Upstream Author : Liis Kol

Bug#991508: unblock: samtools-legacy/0.1.19+dfsg-2

2021-07-25 Thread Nilesh Patra
2020-11-16 23:20:39.0 +0530 +++ samtools-legacy-0.1.19+dfsg/debian/changelog2021-07-25 20:41:17.0 +0530 @@ -1,3 +1,11 @@ +samtools-legacy (0.1.19+dfsg-2) unstable; urgency=medium + + * Team Upload. + * Add Depends on zlib1g-dev + * Add autopkgtests + + -- Nilesh Patra

Bug#991470: unblock: q2-sample-classifier/2020.11.1-2

2021-07-25 Thread Nilesh Patra
control: retitle -1 q2-sample-classifier/2020.11.1-3 On Sun, 25 Jul 2021 10:58:22 +0530 Nilesh Patra wrote: > [...] Unfortunately, autopkgtests were failing on arm64 and ppc64el for this release owing to floating point errors I've fixed this, and uploaded a new release. Attaching deb

Bug#991470: unblock: q2-sample-classifier/2020.11.1-2

2021-07-24 Thread Nilesh Patra
build time tests with || true +rather just print the message that this will be dealt +with in autopkgtests + + -- Nilesh Patra Sun, 25 Jul 2021 10:36:56 +0530 + q2-sample-classifier (2020.11.1-1) unstable; urgency=medium * Team upload. diff -Nru q2-sample-classifier-2020.11.1/debian

Bug#991458: ITP: unifrac -- high-performance phylogenetic diversity calculations

2021-07-24 Thread Nilesh Patra
Package: wnpp Severity: wishlist X-Debbugs-Cc: nil...@debian.org Subject: ITP: unifrac -- high-performance phylogenetic diversity calculations Package: wnpp Owner: Nilesh Patra Severity: wishlist * Package name: unifrac Version : 0.10.0 Upstream Author : , UniFrac development

Bug#991213: syncmaildir FTCBFS -- uses pkg-config of build architecture

2021-07-17 Thread Nilesh Patra
ld be some $ git apply -R debian/patches/replace-use-of-grep--wc-with-grep--c-for.patch $ echo $? 0 $ git commit -am 'Remove applied patch from root' done before uploading. Anyways, I've implemented changes in points 1,2,3 and made a patch, please consider to apply this. Nilesh -

Bug#991108: letterize -- adding autopkgtests

2021-07-14 Thread Nilesh Patra
Package: letterize Version: 1.4-2 Severity: normal Tags: patch X-Debbugs-Cc: nil...@debian.org Dear Maintainer, letterize does not have any autopkgtests at the moment, I've attempted adding these, please consider applying the patch Nilesh -- System Information: Debian Release: bullsey

Bug#991105: letterize FTCBFS -- uses build compiler

2021-07-14 Thread Nilesh Patra
Package: letterize Version: 1.4-2 Severity: normal Tags: patch User: debian-cr...@lists.debian.org Usertags: ftcbfs X-Debbugs-Cc: nil...@debian.org, debian-cr...@lists.debian.org Dear Maintainer, letterize FTCBFS because it uses build architecture compiler instead of host one, more specifically b

Bug#991072: ITP: lbfgspp -- C++ library that implements the Limited-memory BFGS algorithm

2021-07-13 Thread Nilesh Patra
Package: wnpp Severity: wishlist X-Debbugs-Cc: nil...@debian.org Subject: ITP: lbfgspp -- C++ library that implements the Limited-memory BFGS algorithm Package: wnpp Owner: Nilesh Patra Severity: wishlist * Package name: lbfgspp Version : 0.0+git20210613.d50344d Upstream Author

Bug#980806: ITP: python-upsetplot -- Draw Lex et al.'s UpSet plots with Pandas and Matplotlib

2021-07-13 Thread Nilesh Patra
Hi Diane, On Tue, 13 Jul 2021 at 11:25, Diane Trout wrote: > OK. I'll upload it tomorrow, its just about bedtime for me. > I made some changes and uploaded. All changes in salsa. I also added myself as a co-uploader -- hoping that to be fine. Thanks a lot :-) Nilesh

Bug#980806: ITP: python-upsetplot -- Draw Lex et al.'s UpSet plots with Pandas and Matplotlib

2021-07-12 Thread Nilesh Patra
x27;s NEW or should I send it to experimental because of the > freeze? > Unstable's new. Packages not in testing can be uploaded to unstable at any point in time regardless of freeze time, so it should be fine. Nilesh > >

Bug#980806: ITP: python-upsetplot -- Draw Lex et al.'s UpSet plots with Pandas and Matplotlib

2021-07-12 Thread Nilesh Patra
case? We actually need this for another package, cf: https://lists.debian.org/debian-med/2021/07/msg00020.html I actually do not see this even in salsa anywhere If you did not yet, would you mind if I or Steffen take over the packaging? Nilesh signature.asc Description: PGP signature

Bug#820848: RFS: phcpack 2.4.84 (NEW)

2021-07-11 Thread Nilesh Patra
On Sun, 11 Jul 2021 at 05:35, Torrance, Douglas wrote: > On Thu 08 Jul 2021 12:24:47 AM EDT, Torrance, Douglas < > dtorra...@piedmont.edu> wrote: > > On Wed 07 Jul 2021 08:37:08 AM EDT, Doug Torrance < > dtorra...@piedmont.edu> wrote: > >> On Wed 07 Ju

Bug#990924: ITP: cppnumericalsolvers -- C++ library of numerical optimization methods for nonlinear functions

2021-07-10 Thread Nilesh Patra
Package: wnpp Severity: wishlist X-Debbugs-Cc: nil...@debian.org Subject: ITP: cppnumericalsolvers -- C++ library of numerical optimization methods for nonlinear functions Package: wnpp Owner: Nilesh Patra Severity: wishlist * Package name: cppnumericalsolvers Version : 1.0.0

Bug#990896: ITP: python-pyspoa -- Python bindings to spoa

2021-07-10 Thread Nilesh Patra
Package: wnpp Severity: wishlist X-Debbugs-Cc: nil...@debian.org Subject: ITP: python-pyspoa -- Python bindings to spoa Package: wnpp Owner: Nilesh Patra Severity: wishlist * Package name: python-pyspoa Version : 0.0.8 Upstream Author : Oxford Nanopore Technologies * URL

Bug#990795: libident -- Fails to build reproducibly

2021-07-07 Thread Nilesh Patra
because: a) It injects timestamps in gzip b) It injects buildpath Please consider applying the attached patch Nilesh -- System Information: Debian Release: bullseye/sid APT prefers testing APT policy: (500, 'testing') Architecture: amd64 (x86_64) Kernel: Linux 5.7.0-2-amd64 (S

Bug#820848: RFS: phcpack 2.4.84 (NEW)

2021-07-07 Thread Nilesh Patra
d compile the same during the build. > > It was already being re-compiled during build ("make -C plot2d" in > d/rules), but > I went ahead and also repacked the tarball without it. > Uploaded this, thanks for your work! Nilesh

Bug#820848: RFS: phcpack 2.4.84 (NEW)

2021-07-07 Thread Nilesh Patra
On Wed, 7 Jul, 2021, 10:46 am Nilesh Patra, wrote: > >> I'm also still looking for sponsors for a few other packages: >> >> * macaulay2 (new upstream version 1.18, for experimental) >> https://salsa.debian.org/science-team/macaulay2 > > > Unfortu

Bug#820848: RFS: phcpack 2.4.84 (NEW)

2021-07-06 Thread Nilesh Patra
ed, I won't need to ask for sponsorship for non-NEW packages. :) > I'm very happy about this. Whilst I could not advocate you due to us working on not many packages together, I was definitely cheering on the sidelines all this while. I hope you apply for being a DD someday, and by that time I've sponsored enough packages for you. Cheers, Nilesh

Bug#990770: tcode -- add autopkgtests

2021-07-06 Thread Nilesh Patra
Package: tcode Version: 0.1.20080918-3 Severity: normal Tags: patch X-Debbugs-Cc: nil...@debian.org Dear Maintainer, tcode does not have any autopkgtests at the moment, I've attempted adding these, please consider applying the patch Nilesh -- System Information: Debian Release: bullsey

Bug#990768: tcode -- Does not build reproducibly

2021-07-06 Thread Nilesh Patra
it vendors a pdf that saves in build dates on several pages. Hence the best way is to simply remove build date from the said pdf. Vendoring the "build date" is rarely useful, and hence can be easily removed. Please consider applying the attached patch Nilesh -- System Informati

Bug#968045: golang-gonum-v1-plot: please make the build reproducible

2021-07-06 Thread Nilesh Patra
Hi Chris, On Mon, 01 Mar 2021 13:08:03 - "Chris Lamb" wrote: > Hi Nilesh, > > (Just to say that I did not see your two emails until now; the bug > submitter does not automatically receive emails sent directly to the > bug email address — one should either CC

Bug#990731: unblock: virulencefinder/2.0.3+git20190809.dde157a-3

2021-07-05 Thread Nilesh Patra
nder-2.0.3+git20190809.dde157a/debian/changelog 2021-07-06 00:36:09.0 +0530 @@ -1,3 +1,11 @@ +virulencefinder (2.0.3+git20190809.dde157a-3) unstable; urgency=medium + + * Team Upload. + * d/control: Add Missing Depends on python3-distutils +(Closes: #990728) + + -- Nilesh Patra Tue, 06 Jul

Bug#990730: unblock: resfinder/3.2-3

2021-07-05 Thread Nilesh Patra
eam Upload. + * d/control: Add Missing Depends on python3-distutils +(Closes: #990726) + * d/p/fix_syntaxwarning.patch: Fix syntax warning for +literal comparison + + -- Nilesh Patra Tue, 06 Jul 2021 00:05:05 +0530 + resfinder (3.2-2) unstable; urgency=medium [ Nilesh Patra ]

Bug#990728: virulencefinder: Should Depend on python3-distutils -- renders package unusable

2021-07-05 Thread Nilesh Patra
n the main file virulencefinder.py:7:from distutils.spawn import find_executable Nilesh -- System Information: Debian Release: bullseye/sid APT prefers testing APT policy: (500, 'testing') Architecture: amd64 (x86_64) Kernel: Linux 5.7.0-2-amd64 (SMP w/8 CPU threads) Kernel taint fla

Bug#990726: resfinder: Should Depend on python3-distutils -- renders package unusable

2021-07-05 Thread Nilesh Patra
py:15:from distutils.spawn import find_executable Also, it has a problem with literal comparision (is instead of ==) which should be fixed Installation warns about: "if databases is '':" Nilesh -- System Information: Debian Release: bullseye/sid APT prefers testing APT policy:

Bug#990621: unblock: python-duckpy/3.1.0-2

2021-07-02 Thread Nilesh Patra
topkgtests + * d/examples: Add d/tests/test_duckpy_basic.py as example + * d/control: Add Depends on python3-h2 (Closes: #990620) + + -- Nilesh Patra Sat, 03 Jul 2021 01:37:34 +0530 + python-duckpy (3.1.0-1) unstable; urgency=medium * Team upload. diff -Nru python-duckpy-3.1.0/debian/control pyt

Bug#990620: python-duckpy: python-ducky -- Mising Depends on python3-h2 -- renders package unusable

2021-07-02 Thread Nilesh Patra
dependency error[2] "Using http2=True, but the 'h2' package is not installed" [1]: https://salsa.debian.org/med-team/python-duckpy/-/commit/687a66a3be451d5f3458caa956927af7bd9880c5 [2]: https://salsa.debian.org/med-team/python-duckpy/-/jobs/1736252 Nilesh -- System Informa

Bug#990422: randomsound FTCBFS -- uses build architecture compiler

2021-06-28 Thread Nilesh Patra
. Also, it runs the tests in buildstamps, and does not respect nocheck opts Please consider applying the attached patch for the above fixes Nilesh -- System Information: Debian Release: bullseye/sid APT prefers testing APT policy: (500, 'testing') Architecture: amd64 (x86_64) Kernel: Lin

Bug#990413: ITP: ont-fast5-api -- simple interface to HDF5 files of the Oxford Nanopore .fast5 file format

2021-06-28 Thread Nilesh Patra
Package: wnpp Severity: wishlist X-Debbugs-Cc: nil...@debian.org Subject: ITP: ont-fast5-api -- simple interface to HDF5 files of the Oxford Nanopore .fast5 file format Package: wnpp Owner: Nilesh Patra Severity: wishlist * Package name: ont-fast5-api Version : 3.1.5 Upstream

Bug#989804: jamnntpd FTCBFS -- uses the build architecture compiler

2021-06-13 Thread Nilesh Patra
adjusting d/rules to use dh_auto_build instead of $(MAKE) fixes it. Please consider to apply the patch Nilesh -- System Information: Debian Release: bullseye/sid APT prefers testing APT policy: (500, 'testing') Architecture: amd64 (x86_64) Kernel: Linux 5.7.0-2-amd64 (SMP w/8 CPU threa

Bug#989693: brian: Fails to build reproducibly

2021-06-10 Thread Nilesh Patra
l [1]: https://salsa.debian.org/med-team/brian/-/commit/f16a61b846edb138e0d81cba1cc5e58f0e625ccc Nilesh -- System Information: Debian Release: bullseye/sid APT prefers testing APT policy: (500, 'testing') Architecture: amd64 (x86_64) Kernel: Linux 5.7.0-2-amd64 (SMP w/8 CPU thread

Bug#989617: cimg-doc: cimg -- Fails to build reproducibly

2021-06-08 Thread Nilesh Patra
Package: cimg-doc Version: 2.9.4+dfsg-2 Severity: normal Tags: patch User: reproducible-bui...@lists.alioth.debian.org X-Debbugs-Cc: nil...@debian.org, reproducible-b...@lists.alioth.debian.org Dear Maintainer, cimg vendors a few docs which are non deterministic in nature. However on tweaking aro

Bug#989583: liblip: Fails to build reproducibly: multiple problems

2021-06-07 Thread Nilesh Patra
ed by default since this does not seem to use debhelper, and uses a hand-coded d/rules w/o dh customizations and compat level. Manually adding the -ffile-prefix-map with relevant options seems to do the trick. Please consider applying the attached patch. Thanks! Nilesh -- System Inform

Bug#989572: gl2ps -- fails to build reproducibly

2021-06-07 Thread Nilesh Patra
sh to upload post bullseye release. I'm pasting the patch below for ref as well. Nilesh Description: Do not introduce build date in the documentation Author: Nilesh Patra Last-Update: 2021-06-08 --- a/gl2ps.tex +++ b/gl2ps.tex @@ -62,6 +62,7 @@ \title{GL2PS: an OpenGL to PostScript printi

Bug#989537: xmille FTCBFS -- uses build compiler

2021-06-06 Thread Nilesh Patra
building. Please consider applying the attached patch Also, since this package has not been uploaded for ~10 years, which is a fairly long time, I'll nmu this package post bullseye release, if not uploaded on time. Nilesh -- System Information: Debian Release: bullseye/sid APT prefers te

Bug#989533: xsysinfo FTCBFS -- uses build compiler

2021-06-06 Thread Nilesh Patra
cross building. Please consider applying the attached patch Also, since this package has not been uploaded for ~10 years, which is a fairly long time, I'll nmu this package post bullseye release, if not uploaded on time. Nilesh -- System Information: Debian Release: bullseye/sid APT prefers te

Bug#989486: RFS: python-click-log/0.3.2-1 -- Logging integration for Click - Python 3.x

2021-06-05 Thread Nilesh Patra
python-click-log/-/blob/master/debian/rules#L13 [2]: https://release.debian.org/testing/freeze_policy.html Nilesh signature.asc Description: OpenPGP digital signature

Bug#989399: nauty FTCBFS -- multiple reasons

2021-06-03 Thread Nilesh Patra
Hello Andrius On Thu, 3 Jun 2021 at 13:10, Andrius Merkys wrote: > Hi Nilesh, > > On 2021-06-02 19:29, Nilesh Patra wrote: > > Nauty fails to cross build due to two reasons: > > > > 1. It uses AC_RUN_IFELSE testing which cannot heppen during cross build &g

Bug#989399: nauty FTCBFS -- multiple reasons

2021-06-02 Thread Nilesh Patra
Package: nauty Version: 2.7r1+ds-2 Severity: normal Tags: patch User: debian-cr...@lists.debian.org Usertags: ftcbfs X-Debbugs-Cc: nil...@debian.org, debian-cr...@lists.debian.org Dear Maintainer, Nauty fails to cross build due to two reasons: 1. It uses AC_RUN_IFELSE testing which cannot heppen

Bug#989395: wmcpu FTCBFS -- uses the build architecture compiler

2021-06-02 Thread Nilesh Patra
Package: wmcpu Version: 1.4-4 Severity: normal Tags: patch User: debian-cr...@lists.debian.org Usertags: ftcbfs X-Debbugs-Cc: nil...@debian.org, nil...@debian.org, debian-cr...@lists.debian.org Dear Maintainer, Dear Maintainer, wmcpu Fails to cross build because it hardcodes gcc as build compil

Bug#989392: wmmatrix FTCBFS -- uses the build architecture compiler

2021-06-02 Thread Nilesh Patra
Package: wmmatrix Version: 0.2-12.1 Severity: normal Tags: patch User: debian-cr...@lists.debian.org Usertags: ftcbfs X-Debbugs-Cc: nil...@debian.org, debian-cr...@lists.debian.org Dear Maintainer, wmmatrix Fails to cross build because it hardcodes gcc as build compiler in CC=gcc. Simply removing

Bug#989391: phnxdeco FTCBFS -- uses the build architecture compiler

2021-06-02 Thread Nilesh Patra
invocations with $(CC) fixes it. Please consider applying the patch attached. PS: Since this package hasn't been uploaded for more than 13 years, which is a *really really* long time, I intend to NMU it post bullseye release, with this patch applied - if not uploaded on time ofcourse. N

Bug#989390: etherpuppet FTCBFS -- uses the build architecture compiler

2021-06-02 Thread Nilesh Patra
for compilation. Simply using dpkg's buildtools.mk fixes the problem. Please consider applying the attached patch. Nilesh -- System Information: Debian Release: bullseye/sid APT prefers testing APT policy: (500, 'testing') Architecture: amd64 (x86_64) Kernel: Linux 5.7.0-2-amd

Bug#989367: libace-perl FTCBFS -- multiple reasons

2021-06-01 Thread Nilesh Patra
ackages. commit 7afbb565e411547d921be65713504659e58ca46f Author: Nilesh Patra Date: Wed Jun 2 02:08:15 2021 +0530 d/p/cross.patch,d/rules,d/control: Make build cross buildable diff --git a/debian/control b/debian/control index 483b0af..e696474 100644 --- a/debian/control +++ b/debian/control @@ -6,7

Bug#988993: Retitle

2021-05-23 Thread Nilesh Patra
control: retitle -1 ITP: libvbz-hdf-plugin -- VBZ compression plugin for nanopore signal data On Sat, 22 May 2021 23:23:22 +0530 Nilesh Patra wrote: > Remark: This package is maintained by Debian Med Packaging Team at >https://salsa.debian.org/med-team/vbz-compression Now here:

Bug#988993: ITP: vbz-compression -- VBZ compression plugin for nanopore signal data

2021-05-22 Thread Nilesh Patra
Package: wnpp Severity: wishlist X-Debbugs-Cc: nil...@debian.org Subject: ITP: vbz-compression -- VBZ compression plugin for nanopore signal data Package: wnpp Owner: Nilesh Patra Severity: wishlist * Package name: vbz-compression Version : 1.0.1 Upstream Author : Copyright

Bug#988474: [Fwd: Bug#988474: RFS: freefem++/3.61.1+dfsg1-5.2 [NMU] [RC] -- Provides the binaries of the FreeFem++ FE suite]

2021-05-16 Thread Nilesh Patra
we are months away from that date. Nevertheless, it can definitely be a part of bookworm and bullseye-backports. Thanks a lot for your work on freefem++ :-) [1]: https://release.debian.org/bullseye/freeze_policy.html#soft Nilesh

Bug#988556: freebayes FTCBFS -- B-D on python3

2021-05-15 Thread Nilesh Patra
Package: freebayes Version: 1.3.5-1 Severity: normal Tags: patch User: debian-cr...@lists.debian.org Usertags: ftcbfs X-Debbugs-Cc: nil...@debian.org, debian-cr...@lists.debian.org Dear Maintainer, freebayes has cross-satisfiablity issues due to B-D on python3. While in principle it can simply be

Bug#988553: coils FTCBFS -- multiple reasons

2021-05-15 Thread Nilesh Patra
Source: coils Version: 2002-8 Severity: normal Tags: patch User: debian-cr...@lists.debian.org Usertags: ftcbfs X-Debbugs-Cc: nil...@debian.org, debian-cr...@lists.debian.org Dear Maintainer, Coils FTBFS due to two reasons: * It has a B-D on perl due to which it has cross-satisfiablity

Bug#987921: [RFS] Re: Bug#987921: linbox FTBFS on 32bit with gcc 10

2021-05-10 Thread Nilesh Patra
see the full reply here[1] [1]: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=988296#10 Nilesh

Bug#988228: unblock: golang-testify/1.6.1-2

2021-05-08 Thread Nilesh Patra
s: #988101) + + -- Nilesh Patra Sat, 08 May 2021 12:25:09 +0800 + golang-testify (1.6.1-1) unstable; urgency=medium * Team upload. diff -Nru golang-testify-1.6.1/debian/patches/do-not-use-race.patch golang-testify-1.6.1/debian/patches/do-not-use-race.patch --- golang-testify-1.6.1/debian/patches/

Bug#987866: ITP: golang-github-zeebo-wyhash -- Go port of wyhash v3

2021-05-01 Thread Nilesh Patra
On Sat, 01 May 2021 12:50:20 +0530 Nilesh Patra wrote: > Programming Lang: (C, C++, C#, Perl, Python, etc.) Programming Lang: Go The language of this package is Go - I ran a script and did not get a chance to check the output before it sent an ITP. Apologies for that Nilesh signature.

Bug#987866: ITP: golang-github-zeebo-wyhash -- Go port of wyhash v3

2021-05-01 Thread Nilesh Patra
Package: wnpp Severity: wishlist X-Debbugs-Cc: nil...@debian.org Subject: ITP: golang-github-zeebo-wyhash -- Go port of wyhash v3 Package: wnpp Owner: Nilesh Patra Severity: wishlist * Package name: golang-github-zeebo-wyhash Version : 0.0.1 Upstream Author : Jeff Wendling * URL

Bug#987628: queries default homeurl over the internet on first launch

2021-04-27 Thread Nilesh Patra
tions to this, please let me know and I'll perform a team > upload. I'll happily merge if if you let me know the answer to above. Nilesh

Bug#987572: FTCBFS: unsatisfiable python3-sphinx dependency

2021-04-25 Thread Nilesh Patra
Package: biboumi Version: 9.0-2 Severity: normal X-Debbugs-Cc: nil...@debian.org, nil...@debian.org, debian-cr...@lists.debian.org Dear Maintainer, biboumi cannot be cross built from source, because: a) It has a B-D on python3-sphinx and due to package not being split into and -doc arch:all pac

Bug#987263: ITP: node-jmespath -- javascript implementation of JMESPath

2021-04-20 Thread Nilesh Patra
Package: wnpp Severity: wishlist Owner: Nilesh Patra X-Debbugs-Cc: debian-de...@lists.debian.org, nil...@debian.org * Package name: node-jmespath Version : 0.15.0+dfsg Upstream Author : James Saryerwinnie * URL : https://github.com/jmespath/jmespath.js * License

Bug#984877: cubature FTCBFS: multiple reasons

2021-04-18 Thread Nilesh Patra
Fixed in salsa, will upload post bullseye https://salsa.debian.org/science-team/cubature/-/commit/3882776a5814800455244f90354e13411a330562 Nilesh signature.asc Description: PGP signature

Bug#984414: yosys: ftbfs with GCC-11

2021-04-18 Thread Nilesh Patra
control: tags -1 patch Fixed in salsa https://salsa.debian.org/science-team/yosys/-/commit/3d384eef51754edeb802898796953c8fb839facc Nilesh signature.asc Description: PGP signature

Bug#984250: murasaki: ftbfs with GCC-11

2021-04-16 Thread Nilesh Patra
control: tags -1 patch Fix in salsa: https://salsa.debian.org/med-team/murasaki/-/commit/9f9af7183630aefb87a0663576db94a2f28b8899 Awaiting upload. Nilesh signature.asc Description: PGP signature

Bug#986973: ITP: r-cran-gunifrac -- Generalized UniFrac Distances

2021-04-14 Thread Nilesh Patra
Package: wnpp Severity: wishlist Owner: Nilesh Patra X-Debbugs-Cc: debian-de...@lists.debian.org, nil...@debian.org * Package name: r-cran-gunifrac Version : 1.1 Upstream Author : Jun Chen * URL : https://cran.r-project.org/package=GUniFrac * License : GPL-3

Bug#986738: libstarlink-ast-doc: Fails to build reproducibly: Embeds date in the docs

2021-04-10 Thread Nilesh Patra
/starlink-ast/-/commit/3856f00f5b595163d4b04389288fffde42316e90 [2]: https://salsa.debian.org/debian-astro-team/starlink-ast/-/commit/8e50d3ea7244702baac12aa587f71cd653ae4fdf Nilesh -- System Information: Debian Release: bullseye/sid APT prefers unstable APT policy: (500, 'unstable&

Bug#986690: triplane FTCBFS -- executes dksbuild during build

2021-04-09 Thread Nilesh Patra
On Fri, Apr 09, 2021 at 09:44:20PM +0200, Helmut Grohne wrote: > Control: tags -1 - patch > > Hi Nilesh, > > On Fri, Apr 09, 2021 at 09:07:31PM +0530, Nilesh Patra wrote: > > Since fokker.dks binary is not being installed, such a compilation would > > not give an

Bug#986704: xaw3dg: FTCBFS -- uses build compiler during cross build

2021-04-09 Thread Nilesh Patra
cross building. The attached patch fixes the situation, please consider applying Nilesh -- System Information: Debian Release: bullseye/sid APT prefers testing APT policy: (500, 'testing') Architecture: amd64 (x86_64) Kernel: Linux 5.7.0-2-amd64 (SMP w/8 CPU threads) Kernel t

Bug#986690: triplane FTCBFS -- executes dksbuild during build

2021-04-09 Thread Nilesh Patra
Package: triplane Version: 1.0.8-3 Severity: normal Tags: patch X-Debbugs-Cc: nil...@debian.org, debian-cr...@lists.debian.org Dear Maintainer, Since bioawk seems to execute dksbuild in order to generate data in fokker.dks which is not allowed during cross build it could be simply built with bui

Bug#968576: RFS: golang-github-emersion-go-message-dev/0.12.0-1 -- dependency of aerc 0.4.0

2021-04-08 Thread Nilesh Patra
> >* New upstream version > > -- Ben Fiedler Sat, 15 Aug 2020 21:32:15 > +0200 It has been a while, but do you still need sponsoring for this? If yes, I'm willing to do so. PS: aerc is out of testing for this release unfortunately :/ Nevertheless, lets target the next one Nilesh signature.asc Description: PGP signature

Bug#934515: RFS: golang-github-arduino-go-paths-helper [ITP]

2021-04-08 Thread Nilesh Patra
t; be a very easy sponsorship. Any comments or suggestions will be much > appreciated. > > [3]: https://lists.debian.org/debian-go/2019/07/msg7.html > [4]: > https://salsa.debian.org/go-team/packages/golang-github-arduino-go-timeutils > > (Please CC me when responding t

Bug#986601: libjama -- Fails to build reproducibly: usrmerge + gzip inserts timestamps

2021-04-08 Thread Nilesh Patra
On 4/8/21 10:45 PM, Vagrant Cascadian wrote: > Control: user reproducible-bui...@lists.alioth.debian.org > Control: usertags 986601 + timestamps umask > Control: usertags 986601 - usrmerge > > On 2021-04-08, Nilesh Patra wrote: >> Package: libjama > ... &

Bug#986642: weka-doc: Fails to build reproducibly: embeds build date in documentation

2021-04-08 Thread Nilesh Patra
patch below in case if this is needed for reference --- a/wekadocs/manual/manual.tex +++ b/wekadocs/manual/manual.tex @@ -35,6 +35,7 @@ \begin{document} \begin{titlepage} +\date{} \maketitle \thispagestyle{empty} \center [1]: https://salsa.debian.org/java-team/weka/-/merge_requests/1 N

Bug#986601: libjama -- Fails to build reproducibly: usrmerge + gzip inserts timestamps

2021-04-07 Thread Nilesh Patra
stamps so -n flag should be added - tar cf gives different permissions due to usrmerge. The attached patch fixes this, please consider applying and uploading. Nilesh diff --git a/debian/rules b/debian/rules index da0fcbc..f75912b 100755 --- a/debian/rules +++ b/debian/rules @@ -17,11

Bug#986254: gem2deb creates gemspec file as a binary file for ruby-magic-static? gem

2021-04-07 Thread Nilesh Patra
On Wed, Apr 07, 2021 at 04:42:21PM +0530, Nilesh Patra wrote: > I did a bit of debugging on this, and it looks like for this case, the > culprit is yaml instead. > * Now, I have the metadata.yml - I just wrote a snippet of code to check the > behaviour of gemspec w.r.t metadata fil

Bug#986254: gem2deb creates gemspec file as a binary file for ruby-magic-static? gem

2021-04-07 Thread Nilesh Patra
;binary" gemspec which is troublesome. Nilesh out Description: Binary data signature.asc Description: PGP signature

Bug#986254: gem2deb creates gemspec file as a binary file for ruby-magic-static? gem

2021-04-07 Thread Nilesh Patra
long lines So my guess is that the same entry repeated twice is messing with gemspec, removing which it works well. Nilesh --- !ruby/object:Gem::Specification name: ruby-magic-static version: !ruby/object:Gem::Version version: 0.3.5 platform: ruby authors: - Krzysztof Wilczyński autorequire: bind

Bug#986256: [RFS] simka: test failure common denominator ci-worker13

2021-04-05 Thread Nilesh Patra
On 4/6/21 12:29 AM, Étienne Mollier wrote: > Hi Paul, Hi Nilesh, > feel also free to grant dm rights if you feel > appropriate. Done signature.asc Description: OpenPGP digital signature

Bug#986421: ITP: nxtrim -- Optimized trimming of Illumina mate pair reads

2021-04-05 Thread Nilesh Patra
Package: wnpp Severity: wishlist Owner: Nilesh Patra X-Debbugs-Cc: debian-de...@lists.debian.org, nil...@debian.org * Package name: nxtrim Version : 0.4.3+dfsg Upstream Author : Illumina, Inc. * URL : https://github.com/sequencing/NxTrim * License : BSD

Bug#986295: ITP: r-bioc-ballgown -- Flexible, isoform-level differential expression analysis

2021-04-02 Thread Nilesh Patra
Package: wnpp Severity: wishlist Owner: Nilesh Patra X-Debbugs-Cc: debian-de...@lists.debian.org, nil...@debian.org * Package name: r-bioc-ballgown Version : 2.22.0+dfsg Upstream Author : Jack Fu * URL : https://bioconductor.org/packages/ballgown * License

Bug#986256: simka: flaky amd64 autopkgtest: regularly times out after 2:47 h

2021-04-02 Thread Nilesh Patra
passing and failing without changes to the list of installed packages, > are causing people unrelated to your package to spend time on these > tests. That makes sense - do you think marking this test as flaky can be solution? Nilesh signature.asc Description: PGP signature

Bug#986252: ITP: ntcard -- Streaming algorithm to estimate cardinality in genomics datasets

2021-04-01 Thread Nilesh Patra
Package: wnpp Severity: wishlist Owner: Nilesh Patra X-Debbugs-Cc: debian-de...@lists.debian.org, nil...@debian.org * Package name: ntcard Version : 1.2.2+dfsg Upstream Author : Hamid Mohamadi * URL : https://github.com/bcgsc/ntCard * License : Expat

Bug#986242: ITP: fastq-pair -- Rewrites paired end fastq so all reads have a mate to separate out singletons

2021-04-01 Thread Nilesh Patra
Package: wnpp Severity: wishlist Owner: Nilesh Patra X-Debbugs-Cc: debian-de...@lists.debian.org, nil...@debian.org * Package name: fastq-pair Version : 1.0 Upstream Author : Rob Edwards * URL : https://github.com/linsalrob/fastq-pair * License : Expat

Bug#986203: bustools: Please provide autopkgtest

2021-03-31 Thread Nilesh Patra
Package: bustools Version: 0.40.0-4 Severity: wishlist X-Debbugs-Cc: nil...@debian.org Dear Maintainer, Please provide autopkgtest for this package. -- System Information: Debian Release: bullseye/sid APT prefers testing APT policy: (500, 'testing') Architecture: amd64 (x86_64) Kernel: Linu

Bug#986200: sift: Please provide autopkgtest

2021-03-31 Thread Nilesh Patra
Package: sift Version: 4.0.3b-6 Severity: wishlist X-Debbugs-Cc: nil...@debian.org Dear Maintainer, Please provide autopkgtest for this package. -- System Information: Debian Release: bullseye/sid APT prefers testing APT policy: (500, 'testing') Architecture: amd64 (x86_64) Kernel: Linux 5.

Bug#986201: fsm-lite: Please provide autopkgtest

2021-03-31 Thread Nilesh Patra
Package: fsm-lite Version: Please provide autopkgtest Severity: wishlist X-Debbugs-Cc: nil...@debian.org Dear Maintainer, Please provide autopkgtest for this package. -- System Information: Debian Release: bullseye/sid APT prefers testing APT policy: (500, 'testing') Architecture: amd64 (x8

Bug#986197: ecopcr: Please provide autopkgtest

2021-03-31 Thread Nilesh Patra
Package: ecopcr Version: 1.0.1+dfsg-2 Severity: wishlist X-Debbugs-Cc: nil...@debian.org Dear Maintainer, Please provide autopkgtest for this package. -- System Information: Debian Release: bullseye/sid APT prefers testing APT policy: (500, 'testing') Architecture: amd64 (x86_64) Kernel: Li

Bug#986194: pique: no autopkgtest available yet

2021-03-31 Thread Nilesh Patra
Package: pique Version: 1.0-2 Severity: wishlist Tags: newcomer X-Debbugs-Cc: nil...@debian.org Dear Maintainer, It would be a nice addition for the package to have some test suite "autopkgtest" available. -- System Information: Debian Release: bullseye/sid APT prefers unstable APT policy: (

Bug#986193: hinge: no autopkgtest available yet

2021-03-31 Thread Nilesh Patra
Package: hinge Version: 5.0-6+b2 Severity: wishlist X-Debbugs-Cc: nil...@debian.org Dear Maintainer, It would be a nice addition for the package to have some test suite "autopkgtest" available. -- System Information: Debian Release: bullseye/sid APT prefers unstable APT policy: (500, 'unstab

Bug#986170: ITP: r-bioc-ioniser -- Quality Assessment Tools for Oxford Nanopore MinION data

2021-03-30 Thread Nilesh Patra
Package: wnpp Severity: wishlist Owner: Nilesh Patra X-Debbugs-Cc: debian-de...@lists.debian.org, nil...@debian.org * Package name: r-bioc-ioniser Version : 2.14.0+dfsg Upstream Author : Mike Smith * URL : https://bioconductor.org/packages/IONiseR * License

Bug#986137: ITP: pullseq -- Extract sequence from a fasta or fastq

2021-03-30 Thread Nilesh Patra
Package: wnpp Severity: wishlist Owner: Nilesh Patra X-Debbugs-Cc: debian-de...@lists.debian.org, nil...@debian.org * Package name: pullseq Version : 1.0.2 Upstream Author : Brian C. Thomas * URL : https://github.com/bcthomas/pullseq/releases * License

Bug#986102: ITP: r-cran-uniqtag -- Abbreviate Strings to Short, Unique Identifiers

2021-03-29 Thread Nilesh Patra
Package: wnpp Severity: wishlist Owner: Nilesh Patra X-Debbugs-Cc: debian-de...@lists.debian.org, nil...@debian.org * Package name: r-cran-uniqtag Version : 1.0 Upstream Author : Shaun Jackman * URL : https://cran.r-project.org/package=uniqtag * License

Bug#986078: ITP: ssshtest -- stupid simple (ba)sh testing

2021-03-29 Thread Nilesh Patra
Package: wnpp Severity: wishlist Owner: Nilesh Patra X-Debbugs-Cc: debian-de...@lists.debian.org, nil...@debian.org * Package name: ssshtest Version : 0.0+git20190416.6f5438a Upstream Author : Ryan Layer * URL : https://github.com/ryanlayer/ssshtest.git * License

Bug#986067: ITP: r-cran-sampling -- Draw random samples using different sampling schemes

2021-03-29 Thread Nilesh Patra
Package: wnpp Severity: wishlist Owner: Nilesh Patra X-Debbugs-Cc: debian-de...@lists.debian.org, nil...@debian.org * Package name: r-cran-sampling Version : 2.9 Upstream Author : Yves Tille , Alina Matei * URL : https://cran.r-project.org/package=sampling * License

Bug#986052: ITP: r-bioc-qtlizer -- Comprehensive QTL annotation of GWAS results

2021-03-28 Thread Nilesh Patra
Package: wnpp Severity: wishlist Owner: Nilesh Patra X-Debbugs-Cc: debian-de...@lists.debian.org, nil...@debian.org * Package name: r-bioc-qtlizer Version : 1.4.0+dfsg Upstream Author : Matthias Munz * URL : https://bioconductor.org/packages/Qtlizer/ * License

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