Source: golang-github-biogo-hts Version: 1.4.3+dfsg1-1 Severity: serious Justification: FTBFS Tags: bookworm sid ftbfs User: lu...@debian.org Usertags: ftbfs-20220813 ftbfs-bookworm
Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > make[1]: Entering directory '/<<PKGBUILDDIR>>' > rm -f bgzf/line_example_test.go > make[1]: Leaving directory '/<<PKGBUILDDIR>>' > dh_auto_configure -O--buildsystem=golang > dh_auto_build -O--buildsystem=golang > cd obj-x86_64-linux-gnu && go install -trimpath -v -p 8 > github.com/biogo/hts/bam github.com/biogo/hts/bgzf > github.com/biogo/hts/bgzf/cache github.com/biogo/hts/bgzf/index > github.com/biogo/hts/cram github.com/biogo/hts/cram/encoding/itf8 > github.com/biogo/hts/cram/encoding/ltf8 github.com/biogo/hts/csi > github.com/biogo/hts/fai github.com/biogo/hts/internal > github.com/biogo/hts/sam github.com/biogo/hts/tabix > internal/unsafeheader > internal/goexperiment > internal/goarch > internal/race > internal/goos > runtime/internal/atomic > sync/atomic > runtime/internal/syscall > internal/cpu > unicode > unicode/utf8 > internal/itoa > internal/abi > runtime/internal/math > runtime/internal/sys > math/bits > github.com/ulikunitz/xz/internal/hash > internal/bytealg > github.com/biogo/hts/cram/encoding/itf8 > github.com/biogo/hts/cram/encoding/ltf8 > math > runtime > sync > internal/reflectlite > internal/testlog > errors > sort > internal/oserror > path > strconv > io > syscall > container/heap > hash > strings > bytes > hash/crc32 > bufio > reflect > compress/bzip2 > internal/syscall/execenv > internal/syscall/unix > time > internal/poll > io/fs > os > internal/fmtsort > encoding/binary > io/ioutil > fmt > github.com/ulikunitz/xz/internal/xlog > encoding/hex > encoding/csv > net/url > compress/flate > github.com/biogo/hts/fai > github.com/ulikunitz/xz/lzma > compress/gzip > github.com/biogo/hts/bgzf > github.com/biogo/hts/bgzf/cache > github.com/biogo/hts/bgzf/index > github.com/biogo/hts/csi > github.com/biogo/hts/internal > github.com/biogo/hts/sam > github.com/biogo/hts/tabix > github.com/biogo/hts/cram > github.com/biogo/hts/bam > dh_auto_test -O--buildsystem=golang > cd obj-x86_64-linux-gnu && go test -vet=off -v -p 8 > github.com/biogo/hts/bam github.com/biogo/hts/bgzf > github.com/biogo/hts/bgzf/cache github.com/biogo/hts/bgzf/index > github.com/biogo/hts/cram github.com/biogo/hts/cram/encoding/itf8 > github.com/biogo/hts/cram/encoding/ltf8 github.com/biogo/hts/csi > github.com/biogo/hts/fai github.com/biogo/hts/internal > github.com/biogo/hts/sam github.com/biogo/hts/tabix > === RUN Test > OK: 15 passed > --- PASS: Test (0.07s) > === RUN TestFuzzCrashers > --- PASS: TestFuzzCrashers (3.16s) > === RUN TestMerger > --- PASS: TestMerger (0.12s) > PASS > ok github.com/biogo/hts/bam 3.512s > === RUN TestEmpty > --- PASS: TestEmpty (0.00s) > === RUN TestEOF > --- PASS: TestEOF (0.00s) > === RUN TestRoundTrip > --- PASS: TestRoundTrip (0.01s) > === RUN TestRoundTripMulti > --- PASS: TestRoundTripMulti (0.01s) > === RUN TestHeaderIssue57 > --- PASS: TestHeaderIssue57 (0.00s) > === RUN TestRoundTripMultiSeek > --- PASS: TestRoundTripMultiSeek (0.00s) > === RUN TestSeekErrorDeadlock > --- PASS: TestSeekErrorDeadlock (0.00s) > === RUN TestSeekFast > --- PASS: TestSeekFast (0.05s) > === RUN TestCache > --- PASS: TestCache (0.30s) > === RUN TestBlocked > --- PASS: TestBlocked (0.00s) > === RUN TestFuzzCrashers > bgzf_test.go:1139: unexpected error creating reader: unexpected EOF > --- FAIL: TestFuzzCrashers (0.01s) > === RUN TestZeroNonZero > --- PASS: TestZeroNonZero (0.00s) > === RUN TestWriteByteCount > --- PASS: TestWriteByteCount (0.01s) > === RUN TestSeekCacheReadahead > --- PASS: TestSeekCacheReadahead (0.10s) > FAIL > FAIL github.com/biogo/hts/bgzf 0.496s > ? github.com/biogo/hts/bgzf/cache [no test files] > === RUN Test > OK: 3 passed > --- PASS: Test (0.03s) > PASS > ok github.com/biogo/hts/bgzf/index 0.034s > ? github.com/biogo/hts/cram [no test files] > === RUN TestRoundTrip > --- PASS: TestRoundTrip (0.00s) > === RUN TestKnownValues > --- PASS: TestKnownValues (0.00s) > PASS > ok github.com/biogo/hts/cram/encoding/itf8 0.026s > === RUN TestInt64RoundTrip > --- PASS: TestInt64RoundTrip (0.00s) > PASS > ok github.com/biogo/hts/cram/encoding/ltf8 0.042s > === RUN Test > OK: 3 passed > --- PASS: Test (0.00s) > PASS > ok github.com/biogo/hts/csi 0.009s > === RUN TestNewIndex > --- PASS: TestNewIndex (0.00s) > === RUN TestReadFrom > --- PASS: TestReadFrom (0.00s) > === RUN TestWriteTo > --- PASS: TestWriteTo (0.00s) > === RUN TestFile > --- PASS: TestFile (0.00s) > PASS > ok github.com/biogo/hts/fai 0.016s > ? github.com/biogo/hts/internal [no test files] > === RUN Test > OK: 20 passed > --- PASS: Test (0.00s) > === RUN TestSeqAt > --- PASS: TestSeqAt (0.00s) > === RUN ExampleConsume > --- PASS: ExampleConsume (0.00s) > PASS > ok github.com/biogo/hts/sam 0.005s > === RUN Test > OK: 1 passed > --- PASS: Test (0.00s) > PASS > ok github.com/biogo/hts/tabix 0.003s > FAIL > dh_auto_test: error: cd obj-x86_64-linux-gnu && go test -vet=off -v -p 8 > github.com/biogo/hts/bam github.com/biogo/hts/bgzf > github.com/biogo/hts/bgzf/cache github.com/biogo/hts/bgzf/index > github.com/biogo/hts/cram github.com/biogo/hts/cram/encoding/itf8 > github.com/biogo/hts/cram/encoding/ltf8 github.com/biogo/hts/csi > github.com/biogo/hts/fai github.com/biogo/hts/internal > github.com/biogo/hts/sam github.com/biogo/hts/tabix returned exit code 1 The full build log is available from: http://qa-logs.debian.net/2022/08/13/golang-github-biogo-hts_1.4.3+dfsg1-1_unstable.log All bugs filed during this archive rebuild are listed at: https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20220813;users=lu...@debian.org or: https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20220813&fusertaguser=lu...@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! If you reassign this bug to another package, please marking it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
