Source: kissplice Version: 2.6.2-3 Severity: serious Justification: FTBFS Tags: trixie sid ftbfs User: lu...@debian.org Usertags: ftbfs-20240615 ftbfs-trixie
Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' > cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -g -O2 > -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong > -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection > -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -MD -MT > modules/CMakeFiles/ks_run_modules.dir/run.cpp.o -MF > CMakeFiles/ks_run_modules.dir/run.cpp.o.d -o > CMakeFiles/ks_run_modules.dir/run.cpp.o -c /<<PKGBUILDDIR>>/modules/run.cpp > [ 12%] Generating user_guide.pdf > cd /<<PKGBUILDDIR>>/doc && /<<PKGBUILDDIR>>/doc/quiet.sh /usr/bin/pdflatex > -halt-on-error -interaction=nonstopmode > -output-directory=/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/doc > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/doc/user_guide.tex > /usr/bin/pdflatex -halt-on-error -interaction=nonstopmode > -output-directory=/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/doc > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/doc/user_guide.tex > [ 13%] Building CXX object modules/CMakeFiles/ks_print_bcc.dir/PrintBcc.cpp.o > cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -g -O2 > -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong > -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection > -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -MD -MT > modules/CMakeFiles/ks_print_bcc.dir/PrintBcc.cpp.o -MF > CMakeFiles/ks_print_bcc.dir/PrintBcc.cpp.o.d -o > CMakeFiles/ks_print_bcc.dir/PrintBcc.cpp.o -c > /<<PKGBUILDDIR>>/modules/PrintBcc.cpp > This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) > (preloaded format=pdflatex) > restricted \write18 enabled. > entering extended mode > > (/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/doc/user_guide.te > x > LaTeX2e <2023-11-01> patch level 1 > L3 programming layer <2024-03-14> > (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls > Document Class: article 2023/05/17 v1.4n Standard LaTeX document class > (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) > (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty) > (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty > (/usr/share/texlive/texmf-dist/tex/latex/base/latin1.def)) > (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty > (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) > (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty > (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) > (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty > (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def) > (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf)) > (/usr/share/texlive/texmf-dist/tex/generic/babel/locale/en/babel-english.tex) > (/usr/share/texlive/texmf-dist/tex/latex/tools/multicol.sty) > (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty > For additional information on amsmath, use the `?' option. > (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty > (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty)) > (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty[ 15%] Building > CXX object > thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/extension_algorithm.cpp.o > )cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/thirdparty/kissreads/src && > /usr/bin/c++ -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE > -I/<<PKGBUILDDIR>>/thirdparty/kissreads/include -g -O2 > -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong > -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection > -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -fopenmp -MD -MT > thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/extension_algorithm.cpp.o > -MF CMakeFiles/ks_kissreadsSplice.dir/extension_algorithm.cpp.o.d -o > CMakeFiles/ks_kissreadsSplice.dir/extension_algorithm.cpp.o -c > /<<PKGBUILDDIR>>/thirdparty/kissreads/src/extension_algorithm.cpp > > (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) > (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty > (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)) > (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty > (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty > (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) > (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) > (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/dvips.def))) > (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty > (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) > (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def) > (/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx)) > (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) > (/usr/share/texlive/texmf-dist/tex/latex/amscls/amsthm.sty) > (/usr/share/texlive/texmf-dist/tex/latex/tools/enumerate.sty) > (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) > (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty) > (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty[ 17%] Building > CXX object > thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/extension_algorithm.cpp.o > cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/thirdparty/kissreads/src && > /usr/bin/c++ -DCLASSICAL_SPANNING > -I/<<PKGBUILDDIR>>/thirdparty/kissreads/include -g -O2 > -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong > -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection > -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -fopenmp -MD -MT > thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/extension_algorithm.cpp.o > -MF CMakeFiles/ks_kissreadsSNPS.dir/extension_algorithm.cpp.o.d -o > CMakeFiles/ks_kissreadsSNPS.dir/extension_algorithm.cpp.o -c > /<<PKGBUILDDIR>>/thirdparty/kissreads/src/extension_algorithm.cpp > > (/usr/share/texlive/texmf-dist/tex/latex/listings/lstpatch.sty) > (/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) > (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) > (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) > No file user_guide.aux. > *geometry* driver: auto-detecting > *geometry* detected driver: pdftex > *geometry* verbose mode - [ preamble ] result: > * driver: pdftex > * paper: letterpaper > * layout: <same size as paper> > * layoutoffset:(h,v)=(0.0pt,0.0pt) > * modes: > * h-part:(L,W,R)=(71.13188pt, 472.03123pt, 71.13188pt) > * v-part:(T,H,B)=(56.9055pt, 652.70622pt, 85.35826pt) > * \paperwidth=614.295pt > * \paperheight=794.96999pt > * \textwidth=472.03123pt > * \textheight=652.70622pt > * \oddsidemargin=-1.1381pt > * \evensidemargin=-1.1381pt > * \topmargin=-52.36449pt > * \headheight=12.0pt > * \headsep=25.0pt > * \topskip=12.0pt > * \footskip=30.0pt > * \marginparwidth=35.0pt > * \marginparsep=10.0pt > * \columnsep=10.0pt > * \skip\footins=10.8pt plus 4.0pt minus 2.0pt > * \hoffset=0.0pt > * \voffset=0.0pt > * \mag=1000 > * \@twocolumnfalse > * \@twosidefalse > * \@mparswitchfalse > * \@reversemarginfalse > * (1in=72.27pt=25.4mm, 1cm=28.453pt) > > (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii > [Loading MPS to PDF converter (version 2006.09.02).] > ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty > (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) > (/usr/share/texlive/texmf-dist/tex/latex/base/t1cmtt.fd) > (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) > (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) > No file user_guide.toc. > [1 > Non-PDF special ignored! > <special> papersize=614.295pt,794.96999pt > {/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] > Underfull \hbox (badness 10000) in paragraph at lines 58--60 > > > Underfull \hbox (badness 10000) in paragraph at lines 61--63 > > > Overfull \hbox (19.60004pt too wide) in paragraph at lines 68--69 > \T1/cmr/m/n/12 If you have ques-tions, please use pri-mar-ily the biostars > fo-r > um: $\T1/cmtt/m/n/12 www . biostars . org / t / kissplice/$ > > Overfull \hbox (13.7669pt too wide) in paragraph at lines 71--76 > \T1/cmr/m/n/12 To do so, please sub-scribe at : $\T1/cmtt/m/n/12 http : / / > lis > ts . gforge . inria . fr / cgi-[]bin / mailman / listinfo / > [2] > Overfull \hbox (24.58913pt too wide) in paragraph at lines 153--162 > []\T1/cmr/m/n/12 The \T1/cmtt/m/n/12 sample_example \T1/cmr/m/n/12 > di-rec-tory > con-tains four files \T1/cmtt/m/n/12 mock1.fq\T1/cmr/m/n/12 , \T1/cmtt/m/n/12 > m > ock2.fq\T1/cmr/m/n/12 , \T1/cmtt/m/n/12 virus1.fq\T1/cmr/m/n/12 , > \T1/cmtt/m/n/ > 12 virus2.fq > [3] > > LaTeX Warning: Reference `fig:extype1_C2' on page 4 undefined on input line > 173 > . > > > Overfull \hbox (24.90025pt too wide) in paragraph at lines 191--191 > []\T1/cmr/m/n/12 Figure 1: Con-tent of the file \T1/cmtt/m/n/12 > results_mock1_m > ock2_virus1_virus2_k41_coherents_type_1.fa\T1/cmr/m/n/12 , > > LaTeX Warning: Reference `fig:extype1_C0' on page 4 undefined on input line > 201 > . > > > Overfull \hbox (24.90025pt too wide) in paragraph at lines 205--205 > []\T1/cmr/m/n/12 Figure 2: Con-tent of the file \T1/cmtt/m/n/12 > results_mock1_m > ock2_virus1_virus2_k41_coherents_type_1.fa\T1/cmr/m/n/12 , > > LaTeX Warning: `!h' float specifier changed to `!ht'. > > > LaTeX Warning: Reference `fig:extype1_C2' on page 4 undefined on input line > 212 > . > > [4 > <./MBTD1_C2.png/<<PKGBUILDDIR>>/thirdparty/kissreads/src/extension_algorithm.cpp: > In function ‘float read_coherence(gzFile, char*, int, int, fragment_info**, > int, int, int, int, int, FILE*, int, char, int)’: > /<<PKGBUILDDIR>>/thirdparty/kissreads/src/extension_algorithm.cpp:439:44: > warning: comparison of integer expressions of different signedness: ‘int’ and > ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare] > 439 | for (ii=offset_seed; ii<offset_seed+nb_seeds; > ii++) { > | ~~^~~~~~~~~~~~~~~~~~~~~ > In file included from /<<PKGBUILDDIR>>/modules/PrintBcc.cpp:51: > /<<PKGBUILDDIR>>/modules/BubbleEnumeration.h: In function ‘bool > read_edges_and_nodes_withoptimIO(char*, char*, char*, char*, char*, int*, > TEdgeFunctor, TNodeFunctor&) [with TEdgeFunctor = Printer; TNodeFunctor = > Printer]’: > /<<PKGBUILDDIR>>/modules/BubbleEnumeration.h:84:9: warning: ignoring return > value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute > ‘warn_unused_result’ [-Wunused-result] > 84 | fscanf(info_file, "%d \n",&bcc_size ); > | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > /<<PKGBUILDDIR>>/modules/BubbleEnumeration.h:85:9: warning: ignoring return > value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute > ‘warn_unused_result’ [-Wunused-result] > 85 | fscanf(info_file, "%d \n",&records_per_file ); > | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > In file included from /<<PKGBUILDDIR>>/modules/PrintBcc.cpp:50: > /<<PKGBUILDDIR>>/modules/CGraph.h: In function ‘bool > read_node_noncontigous_file_withoptimIO(FILE*, FILE*, int*, int*, TFunctor&) > [with TFunctor = Printer]’: > /<<PKGBUILDDIR>>/modules/CGraph.h:235:68: warning: ignoring return value of > ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ > [-Wunused-result] > 235 | for (int i = 0; i < *required_sequence+*file_index-2 ; i++) > fgets(buffer, 100 * MAX, contents_file_node); > | > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > /<<PKGBUILDDIR>>/modules/CGraph.h:236:9: warning: ignoring return value of > ‘int fscanf(FILE*, const char*, ...)’ declared with attribute > ‘warn_unused_result’ [-Wunused-result] > 236 | fscanf(contents_file_node, "%d \n",&written_lines_before ); > | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > /<<PKGBUILDDIR>>/modules/CGraph.h:237:9: warning: ignoring return value of > ‘int fscanf(FILE*, const char*, ...)’ declared with attribute > ‘warn_unused_result’ [-Wunused-result] > 237 | fscanf(contents_file_node, "%d \n",&written_lines_for_record ); > | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > /<<PKGBUILDDIR>>/modules/CGraph.h:248:58: warning: ignoring return value of > ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ > [-Wunused-result] > 248 | for (int i = 0; i < written_lines_before ; i++) fgets(buffer, 100 > * MAX, node_file); > | > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > /<<PKGBUILDDIR>>/modules/PrintBcc.cpp: In member function ‘void > Printer::operator()(FILE*, int)’: > /<<PKGBUILDDIR>>/modules/PrintBcc.cpp:64:12: warning: ignoring return value > of ‘char* fgets(char*, int, FILE*)’ declared with attribute > ‘warn_unused_result’ [-Wunused-result] > 64 | fgets(buffer, 100 * MAX, in_file); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ > /<<PKGBUILDDIR>>/modules/CGraph.h: In function ‘void > read_edge_file_withoptimIO(FILE*, FILE*, int*, int*, TFunctor&) [with > TFunctor = Printer]’: > /<<PKGBUILDDIR>>/modules/CGraph.h:313:68: warning: ignoring return value of > ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ > [-Wunused-result] > 313 | for (int i = 0; i < *required_sequence+*file_index-2 ; i++) > fgets(buffer, 100 * MAX, contents_file_edge); > | > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > /<<PKGBUILDDIR>>/modules/CGraph.h:314:9: warning: ignoring return value of > ‘int fscanf(FILE*, const char*, ...)’ declared with attribute > ‘warn_unused_result’ [-Wunused-result] > 314 | fscanf(contents_file_edge, "%d \n",&written_lines_before ); > | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > /<<PKGBUILDDIR>>/modules/CGraph.h:315:9: warning: ignoring return value of > ‘int fscanf(FILE*, const char*, ...)’ declared with attribute > ‘warn_unused_result’ [-Wunused-result] > 315 | fscanf(contents_file_edge, "%d \n",&written_lines_for_record ); > | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > /<<PKGBUILDDIR>>/modules/CGraph.h:322:56: warning: ignoring return value of > ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ > [-Wunused-result] > 322 | for (int i = 0; i < written_lines_before ; i++) fgets(buffer, 100 * > MAX, edge_file); > | > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > /<<PKGBUILDDIR>>/thirdparty/kissreads/src/extension_algorithm.cpp: In > function ‘float read_coherence(gzFile, char*, int, int, fragment_info**, int, > int, int, int, int, FILE*, int, char, int)’: > /<<PKGBUILDDIR>>/thirdparty/kissreads/src/extension_algorithm.cpp:439:44: > warning: comparison of integer expressions of different signedness: ‘int’ and > ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare] > 439 | for (ii=offset_seed; ii<offset_seed+nb_seeds; > ii++) { > | ~~^~~~~~~~~~~~~~~~~~~~~ > >] > > LaTeX Warning: Reference `fig:quantif' on page 5 undefined on input line 275. > > [5 <./MBTD1_C0.png[ 18%] Building CXX object > modules/CMakeFiles/ks_print_bcc.dir/Utils.cpp.o > cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -g -O2 > -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong > -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection > -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -MD -MT > modules/CMakeFiles/ks_print_bcc.dir/Utils.cpp.o -MF > CMakeFiles/ks_print_bcc.dir/Utils.cpp.o.d -o > CMakeFiles/ks_print_bcc.dir/Utils.cpp.o -c /<<PKGBUILDDIR>>/modules/Utils.cpp > >] [6 <./quantifModel.png[ 20%] Building CXX object > >thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/interface_libchash.cpp.o > cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/thirdparty/kissreads/src && > /usr/bin/c++ -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE > -I/<<PKGBUILDDIR>>/thirdparty/kissreads/include -g -O2 > -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong > -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection > -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -fopenmp -MD -MT > thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/interface_libchash.cpp.o > -MF CMakeFiles/ks_kissreadsSplice.dir/interface_libchash.cpp.o.d -o > CMakeFiles/ks_kissreadsSplice.dir/interface_libchash.cpp.o -c > /<<PKGBUILDDIR>>/thirdparty/kissreads/src/interface_libchash.cpp > >] > Overfull \hbox (1.2115pt too wide) in paragraph at lines 329--330 > []\T1/cmtt/m/n/12 > graph_NameReadFile1_NameReadFile2_..._NameReadFileN_kXX.nodes > \T1/cmr/m/n/12 for the nodes > > Overfull \hbox (5.2035pt too wide) in paragraph at lines 341--342 > []\T1/cmtt/m/n/12 > results_NameReadFile1_NameReadFile2_..._NameReadFileN_kXX_typ > e_0a.fa\T1/cmr/m/n/12 : Sin- > > Overfull \hbox (9.44136pt too wide) in paragraph at lines 342--343 > []\T1/cmtt/m/n/12 > results_NameReadFile1_NameReadFile2_..._NameReadFileN_kXX_typ > e_0b.fa\T1/cmr/m/n/12 : Mul- > > Overfull \hbox (6.20883pt too wide) in paragraph at lines 343--344 > []\T1/cmtt/m/n/12 > results_NameReadFile1_NameReadFile2_..._NameReadFileN_kXX_typ > e_1.fa\T1/cmr/m/n/12 : al-ter- > > Overfull \hbox (3.92465pt too wide) in paragraph at lines 344--345 > []\T1/cmtt/m/n/12 > results_NameReadFile1_NameReadFile2_..._NameReadFileN_kXX_typ > e_2.fa\T1/cmr/m/n/12 : in-ex- > > Overfull \hbox (4.96884pt too wide) in paragraph at lines 345--346 > []\T1/cmtt/m/n/12 > results_NameReadFile1_NameReadFile2_..._NameReadFileN_kXX_typ > e_3.fa\T1/cmr/m/n/12 : short > [7] > Overfull \hbox (1.06976pt too wide) in paragraph at lines 346--347 > []\T1/cmtt/m/n/12 results_NameReadFile1_..._NameReadFileN_kXX_type_4 > .fa\T1/cmr > /m/n/12 : all oth-ers, com-posed > > Underfull \hbox (badness 1655) in paragraph at lines 351--352 > []\T1/cmr/m/n/12 Since the read co-herency step may take a long time, > \T1/cmtt/ > m/n/12 KisSplice \T1/cmr/m/n/12 pre-emp-tively > > Underfull \hbox (badness 2393) in paragraph at lines 351--352 > \T1/cmr/m/n/12 out-puts these six fasta files be-fore check-ing for read > co-her > ency in the di-rec-tory > > Underfull \hbox (badness 4752) in paragraph at lines 353--354 > []\T1/cmtt/m/n/12 KisSplice \T1/cmr/m/n/12 also cre-ates a sum-mary log file > in > the re-sults di-rec-tory named > [8] > Underfull \hbox (badness 10000) in paragraph at lines 410--411 > > [9] > Underfull \hbox (badness 10000) in paragraph at lines 424--426 > > [10] > (/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/doc/user_guide.au > x) > kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 > tcrm1200 > [ 22%] Building CXX object > modules/CMakeFiles/ks_run_modules.dir/CycleCompression.cpp.o > cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -g -O2 > -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong > -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection > -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -MD -MT > modules/CMakeFiles/ks_run_modules.dir/CycleCompression.cpp.o -MF > CMakeFiles/ks_run_modules.dir/CycleCompression.cpp.o.d -o > CMakeFiles/ks_run_modules.dir/CycleCompression.cpp.o -c > /<<PKGBUILDDIR>>/modules/CycleCompression.cpp > [ 24%] Building CXX object > thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/interface_libchash.cpp.o > cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/thirdparty/kissreads/src && > /usr/bin/c++ -DCLASSICAL_SPANNING > -I/<<PKGBUILDDIR>>/thirdparty/kissreads/include -g -O2 > -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong > -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection > -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -fopenmp -MD -MT > thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/interface_libchash.cpp.o > -MF CMakeFiles/ks_kissreadsSNPS.dir/interface_libchash.cpp.o.d -o > CMakeFiles/ks_kissreadsSNPS.dir/interface_libchash.cpp.o -c > /<<PKGBUILDDIR>>/thirdparty/kissreads/src/interface_libchash.cpp > In file included from /<<PKGBUILDDIR>>/modules/BubbleEnumeration.cpp:61: > /<<PKGBUILDDIR>>/modules/BubbleEnumeration.h: In function ‘bool > read_edges_and_nodes_withoptimIO(char*, char*, char*, char*, char*, int*, > TEdgeFunctor, TNodeFunctor&) [with TEdgeFunctor = EdgeLoader; TNodeFunctor = > NodeLoader]’: > /<<PKGBUILDDIR>>/modules/BubbleEnumeration.h:84:9: warning: ignoring return > value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute > ‘warn_unused_result’ [-Wunused-result] > 84 | fscanf(info_file, "%d \n",&bcc_size ); > | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > /<<PKGBUILDDIR>>/modules/BubbleEnumeration.h:85:9: warning: ignoring return > value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute > ‘warn_unused_result’ [-Wunused-result] > 85 | fscanf(info_file, "%d \n",&records_per_file ); > | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > In file included from /<<PKGBUILDDIR>>/modules/BubbleEnumeration.cpp:60: > /<<PKGBUILDDIR>>/modules/CGraph.h: In function ‘bool > read_node_noncontigous_file_withoptimIO(FILE*, FILE*, int*, int*, TFunctor&) > [with TFunctor = NodeLoader]’: > /<<PKGBUILDDIR>>/modules/CGraph.h:235:68: warning: ignoring return value of > ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ > [-Wunused-result] > 235 | for (int i = 0; i < *required_sequence+*file_index-2 ; i++) > fgets(buffer, 100 * MAX, contents_file_node); > | > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > /<<PKGBUILDDIR>>/modules/CGraph.h:236:9: warning: ignoring return value of > ‘int fscanf(FILE*, const char*, ...)’ declared with attribute > ‘warn_unused_result’ [-Wunused-result] > 236 | fscanf(contents_file_node, "%d \n",&written_lines_before ); > | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > /<<PKGBUILDDIR>>/modules/CGraph.h:237:9: warning: ignoring return value of > ‘int fscanf(FILE*, const char*, ...)’ declared with attribute > ‘warn_unused_result’ [-Wunused-result] > 237 | fscanf(contents_file_node, "%d \n",&written_lines_for_record ); > | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > /<<PKGBUILDDIR>>/modules/CGraph.h:248:58: warning: ignoring return value of > ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ > [-Wunused-result] > 248 | for (int i = 0; i < written_lines_before ; i++) fgets(buffer, 100 > * MAX, node_file); > | > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > /<<PKGBUILDDIR>>/modules/CGraph.h: In member function ‘void > NodeLoader::operator()(FILE*, int)’: > /<<PKGBUILDDIR>>/modules/CGraph.h:198:12: warning: ignoring return value of > ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ > [-Wunused-result] > 198 | fgets(buffer, 100 * MAX, node_file); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > /<<PKGBUILDDIR>>/modules/CGraph.h: In function ‘void > read_edge_file_withoptimIO(FILE*, FILE*, int*, int*, TFunctor&) [with > TFunctor = EdgeLoader]’: > /<<PKGBUILDDIR>>/modules/CGraph.h:313:68: warning: ignoring return value of > ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ > [-Wunused-result] > 313 | for (int i = 0; i < *required_sequence+*file_index-2 ; i++) > fgets(buffer, 100 * MAX, contents_file_edge); > | > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > /<<PKGBUILDDIR>>/modules/CGraph.h:314:9: warning: ignoring return value of > ‘int fscanf(FILE*, const char*, ...)’ declared with attribute > ‘warn_unused_result’ [-Wunused-result] > 314 | fscanf(contents_file_edge, "%d \n",&written_lines_before ); > | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > /<<PKGBUILDDIR>>/modules/CGraph.h:315:9: warning: ignoring return value of > ‘int fscanf(FILE*, const char*, ...)’ declared with attribute > ‘warn_unused_result’ [-Wunused-result] > 315 | fscanf(contents_file_edge, "%d \n",&written_lines_for_record ); > | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > /<<PKGBUILDDIR>>/modules/CGraph.h:322:56: warning: ignoring return value of > ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ > [-Wunused-result] > 322 | for (int i = 0; i < written_lines_before ; i++) fgets(buffer, 100 * > MAX, edge_file); > | > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > /<<PKGBUILDDIR>>/modules/CGraph.h: In member function ‘void > EdgeLoader::operator()(FILE*, int)’: > /<<PKGBUILDDIR>>/modules/CGraph.h:277:14: warning: ignoring return value of > ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ > [-Wunused-result] > 277 | fgets(buffer, 100 * MAX, edge_file); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > [ 25%] Building CXX object > thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/libchash.cpp.o > cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/thirdparty/kissreads/src && > /usr/bin/c++ -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE > -I/<<PKGBUILDDIR>>/thirdparty/kissreads/include -g -O2 > -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong > -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection > -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -fopenmp -MD -MT > thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/libchash.cpp.o -MF > CMakeFiles/ks_kissreadsSplice.dir/libchash.cpp.o.d -o > CMakeFiles/ks_kissreadsSplice.dir/libchash.cpp.o -c > /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp > /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp: In function ‘HTItem* > SparseNextBucket(SparseIterator*)’: > /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:580:44: warning: > comparison of integer expressions of different signedness: ‘long int’ and > ‘u_long’ {aka ‘long unsigned int’} [-Wsign-compare] > 580 | for ( iter->posGroup++; iter->posGroup < > SPARSE_GROUPS(iter->cBuckets); > | ^ > mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; > nonstopmode; input tcrm1200 > This is METAFONT, Version 2.71828182 (TeX Live 2025/dev/Debian) (preloaded > base=mf) > > (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tcrm1200.mf/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp: > In function ‘HTItem* HashFind(HashTable*, u_long)’: > /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:193:12: warning: > ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ > declared with attribute ‘warn_unused_result’ [-Wunused-result] > 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ > /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:220:7: note: in > expansion of macro ‘READ_UL’ > 220 | READ_UL((ht)->fpData, cchData); > \ > | ^~~~~~~ > /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:1074:4: note: in > expansion of macro ‘LOAD_AND_RETURN’ > 1074 | LOAD_AND_RETURN(ht, Find(ht, KEY_TRUNC(ht, key), NULL)); > | ^~~~~~~~~~~~~~~ > > (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf) > (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tcrm.mf > (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txsymb.mf > Ok > (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccess.mf/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp: > In function ‘HTItem* HashFindLast(HashTable*)’: > /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:193:12: warning: > ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ > declared with attribute ‘warn_unused_result’ [-Wunused-result] > 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ > /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:220:7: note: in > expansion of macro ‘READ_UL’ > 220 | READ_UL((ht)->fpData, cchData); > \ > | ^~~~~~~ > /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:1079:4: note: in > expansion of macro ‘LOAD_AND_RETURN’ > 1079 | LOAD_AND_RETURN(ht, ht->posLastFind); > | ^~~~~~~~~~~~~~~ > > Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txpseudo.mf > Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txaccent.mf > Ok [0]/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp: In function > ‘HTItem* HashFirstBucket(HashTable*)’: > /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:193:12: warning: > ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ > declared with attribute ‘warn_unused_result’ [-Wunused-result] > 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ > /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:220:7: note: in > expansion of macro ‘READ_UL’ > 220 | READ_UL((ht)->fpData, cchData); > \ > | ^~~~~~~ > /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:1142:15: note: in > expansion of macro ‘LOAD_AND_RETURN’ > 1142 | LOAD_AND_RETURN(ht, retval); > | ^~~~~~~~~~~~~~~ > [1] [2] [3] [4]/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp: In > function ‘HTItem* HashNextBucket(HashTable*)’: > /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:193:12: warning: > ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ > declared with attribute ‘warn_unused_result’ [-Wunused-result] > 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ > /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:220:7: note: in > expansion of macro ‘READ_UL’ > 220 | READ_UL((ht)->fpData, cchData); > \ > | ^~~~~~~ > /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:1154:15: note: in > expansion of macro ‘LOAD_AND_RETURN’ > 1154 | LOAD_AND_RETURN(ht, retval); > | ^~~~~~~~~~~~~~~ > [5]/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp: In function > ‘HashTable* HashDoLoad(FILE*, char* (*)(FILE*, int), HashTable*)’: > /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:1263:9: warning: > ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ > declared with attribute ‘warn_unused_result’ [-Wunused-result] > 1263 | fread(szMagicKey, 1, 4, fp); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ > /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:193:12: warning: > ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ > declared with attribute ‘warn_unused_result’ [-Wunused-result] > 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ > /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:1272:4: note: in > expansion of macro ‘READ_UL’ > 1272 | READ_UL(fp, ht->cchKey); > | ^~~~~~~ > /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:193:12: warning: > ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ > declared with attribute ‘warn_unused_result’ [-Wunused-result] > 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ > /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:1273:4: note: in > expansion of macro ‘READ_UL’ > 1273 | READ_UL(fp, ht->cItems); > | ^~~~~~~ > /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:193:12: warning: > ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ > declared with attribute ‘warn_unused_result’ [-Wunused-result] > 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ > /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:1274:4: note: in > expansion of macro ‘READ_UL’ > 1274 | READ_UL(fp, ht->cDeletedItems); > | ^~~~~~~ > /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:193:12: warning: > ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ > declared with attribute ‘warn_unused_result’ [-Wunused-result] > 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ > /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:1277:4: note: in > expansion of macro ‘READ_UL’ > 1277 | READ_UL(fp, cchKey); > | ^~~~~~~ > [6]/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:1279:9: warning: > ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ > declared with attribute ‘warn_unused_result’ [-Wunused-result] > 1279 | fread(rgchKeys, 1, cchKey, fp); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ > /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:193:12: warning: > ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ > declared with attribute ‘warn_unused_result’ [-Wunused-result] > 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ > /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:1284:7: note: in > expansion of macro ‘READ_UL’ > 1284 | READ_UL(fp, bck->data); /* all we need if dataRead is > NULL */ > | ^~~~~~~ > [7] [8] [9] [10] [11] [12] [27] [29]) > (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txgen.mf/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp: > In function ‘u_long SparseRead(FILE*, SparseBin**)’: > /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:193:12: warning: > ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ > declared with attribute ‘warn_unused_result’ [-Wunused-result] > 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ > /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:620:4: note: in > expansion of macro ‘READ_UL’ > 620 | READ_UL(fp, cBuckets); /* actually, cBuckets is > stored */ > | ^~~~~~~ > /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:193:12: warning: > ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ > declared with attribute ‘warn_unused_result’ [-Wunused-result] > 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ > /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:625:10: note: in > expansion of macro ‘READ_UL’ > 625 | READ_UL(fp, (*pbinSparse)[i].bmOccupied[j]); > | ^~~~~~~ > > Ok [100] [109] [98] [99] [108]) > (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txsymbol.mf > Ok [13] [18] [21] [22] [23] [24] [25] [26] [28] [31] [32] [36] [39] [44] > [45] [46] [42] [47] [60] [61] [62] [77] [79] [87] [110] [91] [93] [94] [95] > [96] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] > [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] > [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] > [162] [163] [164] [165] [166] [167] [168] [169] [171] [172] [173] [174] > [175] [177] [176] [180] [181] [182] [183] [184] [187] [191] [214] [246]) > (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txromod.mf > Ok [48] [49] [50] [51] [52] [53] [54] [55] [56] [57]) > (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txrsuper.mf > Ok [185] [178] [179] [170] [186]) > (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txrfract.mf > Ok [188] [189] [190]) ) ) ) > (some charht values had to be adjusted by as much as 0.06665pt) > Font metrics written on /<<PKGBUILDDIR>>/obj-x86_64-linu > x-gnu/doc/tcrm1200.tfm. > Output written on /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/ > doc/tcrm1200.600gf (128 characters, 28032 bytes). > Transcript written on /<<PKGBUILDDIR>>/obj-x86_64-linux- > gnu/doc/tcrm1200.log. > mktexpk: `mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; > input tcrm1200' failed to make tcrm1200.600pk. > kpathsea: Appending font creation commands to > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/doc/missfont.log. > > > LaTeX Warning: There were undefined references. > > > LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. > > ) > (see the transcript file for additional information) > !pdfTeX error: /usr/bin/pdflatex (file tcrm1200): Font tcrm1200 at 600 not > foun > d > ==> Fatal error occurred, no output PDF file produced! > make[3]: *** [doc/CMakeFiles/doc.dir/build.make:78: doc/user_guide.pdf] Error > 1 The full build log is available from: http://qa-logs.debian.net/2024/06/15/kissplice_2.6.2-3_unstable.log All bugs filed during this archive rebuild are listed at: https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20240615;users=lu...@debian.org or: https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20240615&fusertaguser=lu...@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.