Bug#682199: Packaging biom-format for Debian (Was: Bug#682199: qiime: Needs function from biom-format.org, which is not packaged.)

2012-07-23 Thread Andreas Tille
Hi Greg, thanks for your quick reply. On Sun, Jul 22, 2012 at 07:13:39PM -0700, Greg Caporaso wrote: > Thanks for getting in touch about this. The biom-format project is > under GPL. I'll also make sure that we drop the OS X files next time > we do a release build. Thanks, droping those files ma

Bug#682199: Packaging biom-format for Debian (Was: Bug#682199: qiime: Needs function from biom-format.org, which is not packaged.)

2012-07-22 Thread Greg Caporaso
Hi Andreas, Thanks for getting in touch about this. The biom-format project is under GPL. I'll also make sure that we drop the OS X files next time we do a release build. Greg On Fri, Jul 20, 2012 at 3:29 AM, Andreas Tille wrote: > Hi Greg, > > I try to fix a bug report against the Debian packag

Bug#682199: Packaging biom-format for Debian (Was: Bug#682199: qiime: Needs function from biom-format.org, which is not packaged.)

2012-07-20 Thread Andreas Tille
Hi Greg, I try to fix a bug report against the Debian packaged Qiime. You might possibly know that the Debian Med project tries to inject any program with relevance for medical care and microbiological research straight into Debian for the comfort of users working in this field. When I started p

Bug#682199: qiime: Needs function from biom-format.org, which is not packaged.

2012-07-20 Thread Charles Plessy
Package: qiime Version: 1.5.0-1 Severity: normal Hi all, /usr/lib/qiime/bin/subsample_fasta.py seems to need functions from a "biom" module, that apparently is not packaged (http://biom-format.org/). $ /usr/lib/qiime/bin/subsample_fasta.py Traceback (most recent call last): File "/usr/lib/qii