Hi everyone,
I talked some with upstream about the symbols issues with htslib2
https://github.com/samtools/htslib/issues/616
They think that cram/*.h are private headers, but because we have a
policy of avoiding convenience copies we made those functions public[1]
because a few applications
على الجمعـة 3 تشرين الثاني 2017 17:52، كتب Diane Trout:
> There was also symbols removed between 1.4.1 to 1.5 but upstream didn't
> change their SOVERSION.
>
> As an aside while I was looking at the missing symbols I found mfprintf
> was still listed in htslib 1.5's cram/mFILE.h, but the
On Fri, Nov 03, 2017 at 02:52:11PM -0700, Diane Trout wrote:
> I restored it with git-revert and rebuilt 1.4.1 and 1.5 and discovered
> there were #MISSING# symbols in each rebuild
That's at most to be expected, there was a SONAME bump in the meantime.
> 1.2 -> 1.4.1 had missing symbols but
> I believe that adding the symbols file back in is the correct
solution.
> It should allow dpkg-shlibdeps to generate the correct libhst2
> dependencies version.
>
> Diane
>
>
Graham pointed out there was a symbols file from 1.2 that was removed.
I restored it with git-revert and rebuilt
> Would adding a symbols file back to the htslib packaging be an
> alternative solution to manually overriding ${shlibs:Depends} in
> samtools, bcftools, and python-pysam? The build-depends in these
> packages are always versioned appropriately.
>
I believe that adding the symbols file back in
على الجمعـة 27 تشرين الأول 2017 09:55، كتب Mattia Rizzolo:
> On Fri, Oct 27, 2017 at 12:52:31AM -0400, Afif Elghraoui wrote:
[...]
>
> What would have been good to prevent the current breakage that has been
> brought to my attention (samtools), what happened is that the newest
> version of
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