Bug#914687: lagan: /usr/bin/chaos is already provided by emboss

2018-12-05 Thread Michael Brudno
Hi Andreas, Lagan is no longer maintained (has not been for over 10 years). Please feel free to make any changes necessary. There are a few minor fixes others have made to make the system more portable: some changes to make the sort calls more modern, and also renaming one sub-function that had a

Bug#914687: lagan: /usr/bin/chaos is already provided by emboss

2018-12-03 Thread Andreas Tille
Control: forwarded -1 Michael Brudno Hi Michael, recently the Debian Med team has packaged lagan for official Debian. This has uncovered the fact that there is a name space conflict with EMBOSS. This is specifically unfortunate since both packages are from the field of bioinformatics and it

Bug#914687: lagan: /usr/bin/chaos is already provided by emboss

2018-11-26 Thread Andreas Beckmann
Package: lagan Version: 2.0-2 Severity: serious User: debian...@lists.debian.org Usertags: piuparts Hi, during a test with piuparts I noticed your package fails to upgrade from 'sid' to 'experimental'. It installed fine in 'sid', then the upgrade to 'experimental' fails because it tries to