Source: python-cobra Version: 0.13.4-2 Severity: serious Tags: ftbfs https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/python-cobra.html
... ============================= test session starts ============================== platform linux -- Python 3.6.8rc1, pytest-3.10.1, py-1.7.0, pluggy-0.8.0 benchmark: 3.1.1 (defaults: timer=time.perf_counter disable_gc=False min_rounds=5 min_time=0.000005 max_time=1.0 calibration_precision=10 warmup=False warmup_iterations=100000) rootdir: /build/1st/python-cobra-0.13.4, inifile: setup.cfg plugins: benchmark-3.1.1 collected 0 items / 1 errors ==================================== ERRORS ==================================== ______________________________ ERROR collecting _______________________________ /usr/lib/python3/dist-packages/_pytest/config/__init__.py:430: in _importconftest return self._conftestpath2mod[conftestpath] E KeyError: local('/build/1st/python-cobra-0.13.4/.pybuild/cpython3_3.6_cobra/build/cobra/test/conftest.py') During handling of the above exception, another exception occurred: /usr/lib/python3/dist-packages/pipdeptree.py:17: in <module> from pip._internal import get_installed_distributions E ImportError: cannot import name 'get_installed_distributions' During handling of the above exception, another exception occurred: /usr/lib/python3/dist-packages/_pytest/config/__init__.py:436: in _importconftest mod = conftestpath.pyimport() /usr/lib/python3/dist-packages/py/_path/local.py:668: in pyimport __import__(modname) cobra/__init__.py:11: in <module> from cobra import flux_analysis, io cobra/flux_analysis/__init__.py:3: in <module> from cobra.flux_analysis.gapfilling import gapfill cobra/flux_analysis/gapfilling.py:8: in <module> from cobra.core import Model cobra/core/__init__.py:6: in <module> from cobra.core.gene import Gene cobra/core/gene.py:13: in <module> from cobra.util import resettable cobra/util/__init__.py:7: in <module> from cobra.util.util import * cobra/util/util.py:5: in <module> from depinfo import print_dependencies /usr/lib/python3/dist-packages/depinfo/__init__.py:27: in <module> from depinfo.info import * /usr/lib/python3/dist-packages/depinfo/info.py:24: in <module> from pipdeptree import build_dist_index, construct_tree /usr/lib/python3/dist-packages/pipdeptree.py:20: in <module> from pip import get_installed_distributions, FrozenRequirement E ImportError: cannot import name 'get_installed_distributions' During handling of the above exception, another exception occurred: /usr/lib/python3/dist-packages/py/_path/common.py:377: in visit for x in Visitor(fil, rec, ignore, bf, sort).gen(self): /usr/lib/python3/dist-packages/py/_path/common.py:429: in gen for p in self.gen(subdir): /usr/lib/python3/dist-packages/py/_path/common.py:418: in gen dirs = self.optsort([p for p in entries /usr/lib/python3/dist-packages/py/_path/common.py:419: in <listcomp> if p.check(dir=1) and (rec is None or rec(p))]) /usr/lib/python3/dist-packages/_pytest/main.py:601: in _recurse ihook = self.gethookproxy(dirpath) /usr/lib/python3/dist-packages/_pytest/main.py:418: in gethookproxy my_conftestmodules = pm._getconftestmodules(fspath) /usr/lib/python3/dist-packages/_pytest/config/__init__.py:414: in _getconftestmodules mod = self._importconftest(conftestpath) /usr/lib/python3/dist-packages/_pytest/config/__init__.py:453: in _importconftest raise ConftestImportFailure(conftestpath, sys.exc_info()) E _pytest.config.ConftestImportFailure: (local('/build/1st/python-cobra-0.13.4/.pybuild/cpython3_3.6_cobra/build/cobra/test/conftest.py'), (<class 'ImportError'>, ImportError("cannot import name 'get_installed_distributions'",), <traceback object at 0x7f6136b65bc8>)) =============================== warnings summary =============================== cobra/flux_analysis/gapfilling.py:83 /build/1st/python-cobra-0.13.4/.pybuild/cpython3_3.6_cobra/build/cobra/flux_analysis/gapfilling.py:83: DeprecationWarning: invalid escape sequence \s """ cobra/core/gene.py:248 /build/1st/python-cobra-0.13.4/.pybuild/cpython3_3.6_cobra/build/cobra/core/gene.py:248: DeprecationWarning: invalid escape sequence \( the_gene_re = re.compile('(^|(?<=( |\()))%s(?=( |\)|$))' % cobra/core/gene.py:262 /build/1st/python-cobra-0.13.4/.pybuild/cpython3_3.6_cobra/build/cobra/core/gene.py:262: DeprecationWarning: invalid escape sequence \( other_gene_re = re.compile('(^|(?<=( |\()))%s(?=( |\)|$))' % /usr/share/python-wheels/colorama-0.3.7-py2.py3-none-any.whl/colorama/ansitowin32.py:49 /usr/share/python-wheels/colorama-0.3.7-py2.py3-none-any.whl/colorama/ansitowin32.py:49: DeprecationWarning: invalid escape sequence \[ /usr/share/python-wheels/colorama-0.3.7-py2.py3-none-any.whl/colorama/ansitowin32.py:50 /usr/share/python-wheels/colorama-0.3.7-py2.py3-none-any.whl/colorama/ansitowin32.py:50: DeprecationWarning: invalid escape sequence \] /usr/share/python-wheels/colorama-0.3.7-py2.py3-none-any.whl/colorama/ansitowin32.py:49 /usr/share/python-wheels/colorama-0.3.7-py2.py3-none-any.whl/colorama/ansitowin32.py:49: DeprecationWarning: invalid escape sequence \[ /usr/share/python-wheels/colorama-0.3.7-py2.py3-none-any.whl/colorama/ansitowin32.py:50 /usr/share/python-wheels/colorama-0.3.7-py2.py3-none-any.whl/colorama/ansitowin32.py:50: DeprecationWarning: invalid escape sequence \] -- Docs: https://docs.pytest.org/en/latest/warnings.html !!!!!!!!!!!!!!!!!!! Interrupted: 1 errors during collection !!!!!!!!!!!!!!!!!!!! ===================== 7 warnings, 1 error in 12.40 seconds ===================== E: pybuild pybuild:338: test: plugin distutils failed with: exit code=2: cd /build/1st/python-cobra-0.13.4/.pybuild/cpython3_3.6_cobra/build; python3.6 -m pytest dh_auto_test: pybuild --test --test-pytest -i python{version} -p "3.6 3.7" returned exit code 13 make: *** [debian/rules:10: build] Error 25