Bug#937262: Help with scons needed (Was: Help needed (Was: pdb2pqr: Python2 removal in sid/bullseye))

2019-12-13 Thread Andreas Tille
On Fri, Dec 13, 2019 at 03:16:32PM +0100, Andreas Tille wrote: > > ... > g++ -o pdb2pka/substruct/Algorithms.cpython-37m-x86_64-linux-gnu.so > -Wl,-z,relro -Wl,-z,now -shared pdb2pka/substruct/Algorithms.os -L/usr/lib > -lpython3.7m -lpython3.7 > /usr/bin/ld: cannot find -lpython3.7 > collect2:

Bug#937262: Help with scons needed (Was: Help needed (Was: pdb2pqr: Python2 removal in sid/bullseye))

2019-12-13 Thread Andreas Tille
On Fri, Dec 13, 2019 at 05:46:42PM +0500, Andrey Rahmatullin wrote: > > > > Thanks for that additional hint. I can confirm that I checked whether > > pkgconfig can be used before I was asking here. But we seem to agree > > that this is not the case. I admit I have no real clue how to convince >

Bug#937262: Help with scons needed (Was: Help needed (Was: pdb2pqr: Python2 removal in sid/bullseye))

2019-12-13 Thread Andrey Rahmatullin
On Fri, Dec 13, 2019 at 01:40:34PM +0100, Andreas Tille wrote: > > > g++ -o pdb2pka/substruct/Algorithms.cpython-37m-x86_64-linux-gnu.so > > > -Wl,-z,relro -Wl,-z,now -shared pdb2pka/substruct/Algorithms.os > > > -L/usr/lib -lpython3.7 > > > /usr/bin/ld: cannot find -lpython3.7 > > Actually, it's

Bug#937262: Help with scons needed (Was: Help needed (Was: pdb2pqr: Python2 removal in sid/bullseye))

2019-12-13 Thread Andreas Tille
Hi Andrey, On Fri, Dec 13, 2019 at 05:18:45PM +0500, Andrey Rahmatullin wrote: > On Fri, Dec 13, 2019 at 09:49:47AM +0100, Andreas Tille wrote: > > g++ -o pdb2pka/substruct/Algorithms.cpython-37m-x86_64-linux-gnu.so > > -Wl,-z,relro -Wl,-z,now -shared pdb2pka/substruct/Algorithms.os -L/usr/lib >

Bug#937262: Help with scons needed (Was: Help needed (Was: pdb2pqr: Python2 removal in sid/bullseye))

2019-12-13 Thread Andrey Rahmatullin
On Fri, Dec 13, 2019 at 09:49:47AM +0100, Andreas Tille wrote: > g++ -o pdb2pka/substruct/Algorithms.cpython-37m-x86_64-linux-gnu.so > -Wl,-z,relro -Wl,-z,now -shared pdb2pka/substruct/Algorithms.os -L/usr/lib > -lpython3.7 > /usr/bin/ld: cannot find -lpython3.7 Actually, it's a different problem

Bug#937262: Help with scons needed (Was: Help needed (Was: pdb2pqr: Python2 removal in sid/bullseye))

2019-12-13 Thread Andreas Tille
Hi Scott, On Thu, Dec 12, 2019 at 04:34:09PM -0500, Scott Talbert wrote: > On Thu, 12 Dec 2019, Andreas Tille wrote: > > mkdir -p /build/pdb2pqr-2.1.1+dfsg/debian/tmp/usr/share/pdb2pqr > > scons \ > >URL="http://localhost/pdb2pqr/"; \ > >PREFIX="/build/pdb2pqr-2.1.1+dfsg/debian/tmp

Bug#937262: Help with scons needed (Was: Help needed (Was: pdb2pqr: Python2 removal in sid/bullseye))

2019-12-12 Thread Scott Talbert
On Thu, 12 Dec 2019, Andreas Tille wrote: That hint was helpful anyway and I get further now. I think now the problem is to convince scons to install in $(CURDIR)/debian/tmp which seems to try rather /usr/share/pdb2pqr directly: Looks like the debian/rules file is specifying /usr/share/pdb2pq

Bug#937262: Help with scons needed (Was: Help needed (Was: pdb2pqr: Python2 removal in sid/bullseye))

2019-12-12 Thread Andreas Tille
On Thu, Dec 12, 2019 at 03:49:13PM -0500, Scott Talbert wrote: > > > > That hint was helpful anyway and I get further now. I think now the > > problem is to convince scons to install in $(CURDIR)/debian/tmp which > > seems to try rather /usr/share/pdb2pqr directly: > > Looks like the debian/rule

Bug#937262: Help with scons needed (Was: Help needed (Was: pdb2pqr: Python2 removal in sid/bullseye))

2019-12-12 Thread Scott Talbert
On Thu, 12 Dec 2019, Andreas Tille wrote: On Thu, 12 Dec 2019, Andreas Tille wrote: I don't see any Python3 changes in that repository. Did you push your changes? Argh, its pushed now. Anyway, the problem is likely in CopySubAction in site_scons/site_init.py. On line 111, the file 'source

Bug#937262: Help with scons needed (Was: Help needed (Was: pdb2pqr: Python2 removal in sid/bullseye))

2019-12-12 Thread Andreas Tille
Hi Scott, On Thu, Dec 12, 2019 at 11:31:09AM -0500, Scott Talbert wrote: > On Thu, 12 Dec 2019, Andreas Tille wrote: > > I don't see any Python3 changes in that repository. Did you push your > changes? Argh, its pushed now. > Anyway, the problem is likely in CopySubAction in site_scons/site_i