Bug#939894: Minia is lacking symbol from gatb-core (Was: Bug#939894: minia: autopkgtest regression: X.contigs.fa: No such file or directory)

2019-09-13 Thread Andreas Tille
On Fri, Sep 13, 2019 at 12:34:27PM +0200, Olivier Sallou wrote: > > > /usr/bin/minia: symbol lookup error: /usr/bin/minia: undefined symbol: > > _ZN4gatb4core8debruijn4impl9link_tigsILm128EEEvNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiiRmb > > > > I suspect minia needs a different / new

Bug#939894: Minia is lacking symbol from gatb-core (Was: Bug#939894: minia: autopkgtest regression: X.contigs.fa: No such file or directory)

2019-09-13 Thread Olivier Sallou
On 9/12/19 10:11 AM, Andreas Tille wrote: > On Mon, Sep 09, 2019 at 09:59:09PM +0200, Paul Gevers wrote: >> Run simple_test.sh >> Traceback (most recent call last): >> File "compare_fasta.py", line 21, in >> s2 = read_seqs(fasta2) >> File "compare_fasta.py",

Bug#939894: Minia is lacking symbol from gatb-core (Was: Bug#939894: minia: autopkgtest regression: X.contigs.fa: No such file or directory)

2019-09-12 Thread Andreas Tille
On Mon, Sep 09, 2019 at 09:59:09PM +0200, Paul Gevers wrote: > Run simple_test.sh > Traceback (most recent call last): > File "compare_fasta.py", line 21, in > s2 = read_seqs(fasta2) > File "compare_fasta.py", line 15, in read_seqs > for line in open(fast

Bug#939894: minia: autopkgtest regression: X.contigs.fa: No such file or directory

2019-09-09 Thread Paul Gevers
Source: minia Version: 3.2.1-1 X-Debbugs-CC: debian...@lists.debian.org User: debian...@lists.debian.org Usertags: regression Dear maintainers, With a recent upload of minia the autopkgtest of minia fails in testing when that autopkgtest is run with the binary packages of minia from unstable. It