More deets: trying with samtools version 1.13 and manually creating this also
fails.
$ samtools index alignment.bam
$ diff alignment.bam.bai alignment.bam.bai_orig
Binary files alignment.bam.bai and alignment.bam.bai_orig differ
Nilesh
OpenPGP_signature
Description: OpenPGP digital signature
control: forwarded -1 https://github.com/wdecoster/nanoget/issues/26
Not sure what exactly causes this, found a related (unfixed) problem in pysam
here:
https://github.com/pysam-developers/pysam/issues/939
Maybe this is the problem ^^^
Nilesh
OpenPGP_signature
Description: OpenPGP
Source: python-nanoget
Version: 1.12.2-4
Severity: serious
Tags: sid bookworm
User: debian...@lists.debian.org
Usertags: regression
Dear Maintainer
Sometime around 2021-10-05, python-nanoget's autopkgtests started to
fail in testing. I've copied what I hope is the relevant part of the
log below.
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