Bug#996374: python-nanoget: autopkgtest regression

2021-10-16 Thread Nilesh Patra
More deets: trying with samtools version 1.13 and manually creating this also fails. $ samtools index alignment.bam $ diff alignment.bam.bai alignment.bam.bai_orig Binary files alignment.bam.bai and alignment.bam.bai_orig differ Nilesh OpenPGP_signature Description: OpenPGP digital signature

Bug#996374: python-nanoget: autopkgtest regression

2021-10-16 Thread Nilesh Patra
control: forwarded -1 https://github.com/wdecoster/nanoget/issues/26 Not sure what exactly causes this, found a related (unfixed) problem in pysam here: https://github.com/pysam-developers/pysam/issues/939 Maybe this is the problem ^^^ Nilesh OpenPGP_signature Description: OpenPGP

Bug#996374: python-nanoget: autopkgtest regression

2021-10-13 Thread Graham Inggs
Source: python-nanoget Version: 1.12.2-4 Severity: serious Tags: sid bookworm User: debian...@lists.debian.org Usertags: regression Dear Maintainer Sometime around 2021-10-05, python-nanoget's autopkgtests started to fail in testing. I've copied what I hope is the relevant part of the log below.