Hi Julian,
On Sun, 24 Jan 2016 14:57:52 +0100 Julian Taylor
wrote:
> Package: swarp
> Version: 2.38.0+dfsg-2
> Severity: important
>
> when coadding more than the openfile limit (normally 1024) overlapping
> files swarp aborts due to too many open files.
> To reproduce create some files with
On Thu, 28 Jan 2021 at 20:48, Håvard Flaget Aasen
wrote:
>
> >
> > I see that you are a DM, If you agree to add yourself to the uploader's
> > field, I'll happily grant permissions.
>
> Thanks! I updated, and included myself in the uploader's field.
>
Done, please upload :-)
Hi Joshua,
Many thanks for fixes,
The freeze has started and soft freeze time is near as well.(2 weeks from now)
OpenMx has removals of a bunch of packages from testing.
Hence, please consider doing a new upstream release if it looks okay to you.
Thanks and regards,
Nilesh
signature.asc
Hi Etienne,
On Fri, 15 Jan 2021 13:16:30 +0100 =?utf-8?Q?=C3=89tienne?= Mollier
wrote:
> Control: tag -1 patch
>
> Hi,
>
> I prepared a targeted patch to fix Gcc-10 issues with sparskit,
> and ran the embedded ./dotests to make sure it did not introduce
> any errors. This fixes the argument
Package: cimg-doc
Version: 2.9.4+dfsg-2
Severity: normal
Tags: patch
User: reproducible-bui...@lists.alioth.debian.org
X-Debbugs-Cc: nil...@debian.org, reproducible-b...@lists.alioth.debian.org
Dear Maintainer,
cimg vendors a few docs which are non deterministic in nature.
However on tweaking
to upload post bullseye release.
I'm pasting the patch below for ref as well.
Nilesh
Description: Do not introduce build date in the documentation
Author: Nilesh Patra
Last-Update: 2021-06-08
--- a/gl2ps.tex
+++ b/gl2ps.tex
@@ -62,6 +62,7 @@
\title{GL2PS: an OpenGL to PostScript printing library
Source: liblip
Version: 2.0.0-1.2
Severity: normal
Tags: patch
User: reproducible-bui...@lists.alioth.debian.org
Usertags: timestamps, buildpath
X-Debbugs-Cc: nil...@debian.org, nil...@debian.org,
reproducible-b...@lists.alioth.debian.org
Dear Maintainer,
The following problems cause problems
2001
From: Nilesh Patra
Date: Thu, 10 Jun 2021 22:03:05 +0530
Subject: [PATCH] Make build reproducible
---
debian/patches/reproducible.patch | 65 +++
debian/patches/series | 1 +
debian/rules | 1 +
3 files changed, 67 insertions
Package: jamnntpd
Version: 1.3-1
Severity: normal
Tags: patch
User: debian-cr...@lists.debian.org
Usertags: ftcbfs
X-Debbugs-Cc: nil...@debian.org, debian-cr...@lists.debian.org
Dear Maintainer,
jamnntpd fails to cross build because it uses build compiler rather than
host compiler.
Simply
Hi Anton,
On Tue, 11 May, 2021, 2:47 am Anton Gladky, wrote:
> Your changes look good. Let's wait for approval by
> release team not to pollute unstable by unapproved uploads.
>
The release team has responded that it's a targeted fix, and can be
uploaded.
You might want to see the full reply
Source: coils
Version: 2002-8
Severity: normal
Tags: patch
User: debian-cr...@lists.debian.org
Usertags: ftcbfs
X-Debbugs-Cc: nil...@debian.org, debian-cr...@lists.debian.org
Dear Maintainer,
Coils FTBFS due to two reasons:
* It has a B-D on perl due to which it has cross-satisfiablity
Package: freebayes
Version: 1.3.5-1
Severity: normal
Tags: patch
User: debian-cr...@lists.debian.org
Usertags: ftcbfs
X-Debbugs-Cc: nil...@debian.org, debian-cr...@lists.debian.org
Dear Maintainer,
freebayes has cross-satisfiablity issues due to B-D on python3.
While in principle it can simply
Hi,
On Mon, 17 May 2021 at 00:10, François Mazen wrote:
> Hello Anton,
>
> > When the package is successfully built on all relevant platforms,
> > you can ask the release team to unblock it. But it will unlikely
> > happen
> > due to release policy.
>
> I've requested the unblock, see [1]. Let
)
+
+ -- Nilesh Patra Sat, 08 May 2021 12:25:09 +0800
+
golang-testify (1.6.1-1) unstable; urgency=medium
* Team upload.
diff -Nru golang-testify-1.6.1/debian/patches/do-not-use-race.patch
golang-testify-1.6.1/debian/patches/do-not-use-race.patch
--- golang-testify-1.6.1/debian/patches/do-not-use
Package: wmcpu
Version: 1.4-4
Severity: normal
Tags: patch
User: debian-cr...@lists.debian.org
Usertags: ftcbfs
X-Debbugs-Cc: nil...@debian.org, nil...@debian.org,
debian-cr...@lists.debian.org
Dear Maintainer,
Dear Maintainer,
wmcpu Fails to cross build because it hardcodes gcc as build
Package: wmmatrix
Version: 0.2-12.1
Severity: normal
Tags: patch
User: debian-cr...@lists.debian.org
Usertags: ftcbfs
X-Debbugs-Cc: nil...@debian.org, debian-cr...@lists.debian.org
Dear Maintainer,
wmmatrix Fails to cross build because it hardcodes gcc as build
compiler in CC=gcc.
Simply
Package: nauty
Version: 2.7r1+ds-2
Severity: normal
Tags: patch
User: debian-cr...@lists.debian.org
Usertags: ftcbfs
X-Debbugs-Cc: nil...@debian.org, debian-cr...@lists.debian.org
Dear Maintainer,
Nauty fails to cross build due to two reasons:
1. It uses AC_RUN_IFELSE testing which cannot
Package: etherpuppet
Version: 0.3-4
Severity: normal
Tags: patch
User: debian-cr...@lists.debian.org
Usertags: ftcbfs
X-Debbugs-Cc: nil...@debian.org, debian-cr...@lists.debian.org
Dear Maintainer,
etherpuppet Fails to cross build because it uses the build compiler
rather than the host compiler
Package: phnxdeco
Version: 0.33-3
Severity: normal
Tags: patch
User: debian-cr...@lists.debian.org
Usertags: ftcbfs
X-Debbugs-Cc: nil...@debian.org, debian-cr...@lists.debian.org
Dear Maintainer,
phnxdeco Fails to cross build because it hardcodes gcc as build
compiler,
Simply replacing such
Package: wnpp
Severity: wishlist
X-Debbugs-Cc: nil...@debian.org
Subject: ITP: vbz-compression -- VBZ compression plugin for nanopore signal data
Package: wnpp
Owner: Nilesh Patra
Severity: wishlist
* Package name: vbz-compression
Version : 1.0.1
Upstream Author : Copyright
control: retitle -1 ITP: libvbz-hdf-plugin -- VBZ compression plugin for
nanopore signal data
On Sat, 22 May 2021 23:23:22 +0530 Nilesh Patra wrote:
> Remark: This package is maintained by Debian Med Packaging Team at
>https://salsa.debian.org/med-team/vbz-compression
Now here:
On 6/5/21 8:04 PM, Emmanuel Arias wrote:
> Hi,
>
> I'm not DD, but I send you some review, to gain time:
>
> * d/changelog says: `Bump debhelper from old 10 to 12.` but actuall>
> debhelper-compat version is 13.
> * Please use UNRELEASED instead of unstable, that can be confused.
Fixed
> *
Package: xmille
Version: 2.0-13
Severity: normal
Tags: patch
User: debian-cr...@lists.debian.org
Usertags: ftcbfs
X-Debbugs-Cc: nil...@debian.org, debian-cr...@lists.debian.org
Dear Maintainer,
xmille fails to cross build because it uses build compiler rather than
the host compiler while cross
Package: xsysinfo
Version: 1.7-9
Severity: normal
Tags: patch
User: debian-cr...@lists.debian.org
Usertags: ftcbfs
X-Debbugs-Cc: nil...@debian.org, debian-cr...@lists.debian.org
Dear Maintainer,
xsysinfo fails to cross build because it uses build compiler rather than
the host compiler while
Hello Andrius
On Thu, 3 Jun 2021 at 13:10, Andrius Merkys wrote:
> Hi Nilesh,
>
> On 2021-06-02 19:29, Nilesh Patra wrote:
> > Nauty fails to cross build due to two reasons:
> >
> > 1. It uses AC_RUN_IFELSE testing which cannot heppen during cross bu
7afbb565e411547d921be65713504659e58ca46f
Author: Nilesh Patra
Date: Wed Jun 2 02:08:15 2021 +0530
d/p/cross.patch,d/rules,d/control: Make build cross buildable
diff --git a/debian/control b/debian/control
index 483b0af..e696474 100644
--- a/debian/control
+++ b/debian/control
@@ -6,7 +6,8 @@ Section
On Wed, 7 Jul, 2021, 10:46 am Nilesh Patra, wrote:
>
>> I'm also still looking for sponsors for a few other packages:
>>
>> * macaulay2 (new upstream version 1.18, for experimental)
>> https://salsa.debian.org/science-team/macaulay2
>
>
> Unfortuna
On Wed, 7 Jul 2021 at 18:07, Torrance, Douglas
wrote:
> >> * qepcad (NEW)
> >> https://salsa.debian.org/science-team/qepcad
> >
> >
> > ./plot2d/ADJ2D_plot is a binary file, and I'm sure FTP masters will not
> > like it. Please repack this and compile the same during the build.
>
> It was
Package: libident
Version: 0.22-3.1
Severity: normal
Tags: patch
User: reproducible-bui...@lists.alioth.debian.org
Usertags: timestamps, buildpath
X-Debbugs-Cc: nil...@debian.org, nil...@debian.org,
reproducible-b...@lists.alioth.debian.org
Dear Maintainer,
libident fails to build reproducibly
Hi Chris,
On Mon, 01 Mar 2021 13:08:03 - "Chris Lamb" wrote:
> Hi Nilesh,
>
> (Just to say that I did not see your two emails until now; the bug
> submitter does not automatically receive emails sent directly to the
> bug email address — one should either CC them directly or use the
>
Package: tcode
Version: 0.1.20080918-3
Severity: normal
Tags: patch
User: reproducible-bui...@lists.alioth.debian.org
Usertags: timestamps
X-Debbugs-Cc: nil...@debian.org, nil...@debian.org,
reproducible-b...@lists.alioth.debian.org
Dear Maintainer,
src:tcode fails to build reproducibly because
Source: python-duckpy
Version: 3.1.0-1
Severity: serious
X-Debbugs-Cc: nil...@debian.org
Dear Maintainer,
python-duckpy has a missing dependency on python3-h2 which is uncovered
by a non-superficial autopkgtest committed to salsa[1]
As can be seen in the corresponding pipeline, it fails with
+ * d/examples: Add d/tests/test_duckpy_basic.py as example
+ * d/control: Add Depends on python3-h2 (Closes: #990620)
+
+ -- Nilesh Patra Sat, 03 Jul 2021 01:37:34 +0530
+
python-duckpy (3.1.0-1) unstable; urgency=medium
* Team upload.
diff -Nru python-duckpy-3.1.0/debian/control python-duckpy
Package: wnpp
Severity: wishlist
X-Debbugs-Cc: nil...@debian.org
Subject: ITP: ont-fast5-api -- simple interface to HDF5 files of the Oxford
Nanopore .fast5 file format
Package: wnpp
Owner: Nilesh Patra
Severity: wishlist
* Package name: ont-fast5-api
Version : 3.1.5
Upstream
Package: randomsound
Version: 0.2-5
Severity: normal
Tags: patch
User: debian-cr...@lists.debian.org
Usertags: ftcbfs
X-Debbugs-Cc: nil...@debian.org, debian-cr...@lists.debian.org
Dear Maintainer,
randomsound fails to cross build because it uses build compiler arch
instead of host compiler.
Package: wnpp
Severity: wishlist
X-Debbugs-Cc: nil...@debian.org
Subject: ITP: cppnumericalsolvers -- C++ library of numerical optimization
methods for nonlinear functions
Package: wnpp
Owner: Nilesh Patra
Severity: wishlist
* Package name: cppnumericalsolvers
Version : 1.0.0
On Sun, 11 Jul 2021 at 05:35, Torrance, Douglas
wrote:
> On Thu 08 Jul 2021 12:24:47 AM EDT, Torrance, Douglas <
> dtorra...@piedmont.edu> wrote:
> > On Wed 07 Jul 2021 08:37:08 AM EDT, Doug Torrance <
> dtorra...@piedmont.edu> wrote:
> >> On Wed 07 Ju
Hi Diane,
On Fri, 22 Jan 2021 10:53:05 -0800 Diane Trout wrote:
> Package: wnpp
> Severity: wishlist
> Owner: Diane Trout
> X-Debbugs-Cc: debian-de...@lists.debian.org
>
> * Package name: python-upsetplot
Did you get this packaged yet, or did you forget uploading in any case?
We actually
On Tue, 13 Jul, 2021, 2:14 am Diane Trout, wrote:
> Sorry about that I forgot to post it.
>
> I added it here
>
> https://salsa.debian.org/med-team/python-upsetplot
Many thanks!
> I just updated it to the recent release, do you know if I should send
> it to unstable's NEW or should I send
Package: tcode
Version: 0.1.20080918-3
Severity: normal
Tags: patch
X-Debbugs-Cc: nil...@debian.org
Dear Maintainer,
tcode does not have any autopkgtests at the moment,
I've attempted adding these, please consider applying the patch
Nilesh
-- System Information:
Debian Release: bullseye/sid
Package: resfinder
Version: 3.2-2
Severity: serious
X-Debbugs-Cc: nil...@debian.org
Dear Maintainer,
resfinder currently test-depends on python3-distutils,
however it really, really should "Depend" on python3-distutils for
there is an import call in the main file
resfinder.py:15:from
+git20190809.dde157a/debian/changelog 2021-07-06
00:36:09.0 +0530
@@ -1,3 +1,11 @@
+virulencefinder (2.0.3+git20190809.dde157a-3) unstable; urgency=medium
+
+ * Team Upload.
+ * d/control: Add Missing Depends on python3-distutils
+(Closes: #990728)
+
+ -- Nilesh Patra Tue, 06 Jul 2021 00:36
Package: virulencefinder
Version: 2.0.3+git20190809.dde157a-2
Severity: serious
X-Debbugs-Cc: nil...@debian.org
Dear Maintainer,
virulencefinder currently test-depends on python3-distutils,
however it really, really should "Depend" on python3-distutils for
there is an import call in the main
.
+ * d/control: Add Missing Depends on python3-distutils
+(Closes: #990726)
+ * d/p/fix_syntaxwarning.patch: Fix syntax warning for
+literal comparison
+
+ -- Nilesh Patra Tue, 06 Jul 2021 00:05:05 +0530
+
resfinder (3.2-2) unstable; urgency=medium
[ Nilesh Patra ]
diff -Nru
Hi Doug,
On Wed, 7 Jul 2021 at 03:42, Torrance, Douglas
wrote:
>
> On Wed 19 May 2021 12:37:22 PM EDT, Doug Torrance
> wrote:
> > I've finished packaging PHCpack, which is written in Ada and solves
> polynomial systems using homotopy continuation, for Debian. It also
> includes Python and
Package: wnpp
Severity: wishlist
X-Debbugs-Cc: nil...@debian.org
Subject: ITP: python-pyspoa -- Python bindings to spoa
Package: wnpp
Owner: Nilesh Patra
Severity: wishlist
* Package name: python-pyspoa
Version : 0.0.8
Upstream Author : Oxford Nanopore Technologies
* URL
Hi taowa,
On Mon, 26 Apr 2021 15:02:53 -0400 Taowa wrote:
> By default, bombadillo retrieves the file[1] over gopher whenever it's
> launched. Considering that its website says that it "does not
> send/transmit anything to anyone that you do not instruct it to"[2], I
> do not believe this
On Sat, 01 May 2021 12:50:20 +0530 Nilesh Patra wrote:
> Programming Lang: (C, C++, C#, Perl, Python, etc.)
Programming Lang: Go
The language of this package is Go - I ran a script and did not get a
chance to check the output before it sent an ITP. Apologies for that
Nilesh
signature.
Package: wnpp
Severity: wishlist
X-Debbugs-Cc: nil...@debian.org
Subject: ITP: golang-github-zeebo-wyhash -- Go port of wyhash v3
Package: wnpp
Owner: Nilesh Patra
Severity: wishlist
* Package name: golang-github-zeebo-wyhash
Version : 0.0.1
Upstream Author : Jeff Wendling
* URL
Package: biboumi
Version: 9.0-2
Severity: normal
X-Debbugs-Cc: nil...@debian.org, nil...@debian.org,
debian-cr...@lists.debian.org
Dear Maintainer,
biboumi cannot be cross built from source, because:
a) It has a B-D on python3-sphinx and due to package not being split
into and -doc arch:all
On Sun, 7 Feb 2021 22:08:58 +0100 =?utf-8?Q?=C3=89tienne?= Mollier
wrote:
> I tried to reproduce the bug by building igdiscover 0.11-3 using
> sbuild in a clean Sid chroot which did include pytest 6:
>
> $ schroot -c unstable-amd64-sbuild -d / \
> -- apt-cache show python3-pytest \
> | grep
Hi Håvard
Looks like you've fixed this, but not uploaded yet.
Is there anything missing, or should I upload this one?
Regards,
Nilesh
On Thu, 14 Jan 2021 11:09:50 + =?UTF-8?B?SMOldmFyZCBGbGFnZXQgQWFzZW4=?=
wrote:
> Control: tag -1 pending
>
> Hello,
>
> Bug #978279 in afew reported by
On Thu, 28 Jan 2021 at 19:31, Håvard Flaget Aasen
wrote:
> Hi Nilesh
>
> The reason I haven't uploaded is because I'm not a DD, so I don't have
> the necessary permissions.
>
I see that you are a DM, If you agree to add yourself to the uploader's
field, I'll happily grant permissions.
> I
Hi Tino,
On Tue, 5 Jan 2021 01:13:56 +0100 Tino Didriksen wrote:
> apertium-ukr should be removed from Debian. The pair that needed it has
> been upgraded to bundle the required version instead:
If you agree, can I retitle and reassign to file in a removal bug for
apertium-ukr, then?
Also, I
Package: wnpp
Severity: wishlist
Owner: Nilesh Patra
X-Debbugs-Cc: debian-de...@lists.debian.org, nil...@debian.org
* Package name: nthash
Version : 2.2.0-1
Upstream Author : Hamid Mohamadi
* URL : https://github.com/bcgsc/ntHash
* License : Expat
control: retitle -1 ITP: golang-github-aryann-difflib -- go library for diffing
two sequences of text
Hi,
As I said on debian-go@l.d.o [1] as well, the name of the source package
should "NOT" have -dev suffxed however, binary package "must" have
-dev suffixed -- please fix your debian/ dir
On 2021-03-26 01:58, Andreas Tille wrote:
> Hi folks,
>
> I have packaged bamclipper[1] since it is a precondition for the
> pipeline covpipe[2] which is developed and used in my institute.
> (@Steffen, possibly another column in the spreadsheet.)
>
> Despite bamclipper is pretty easy I would
Package: wnpp
Severity: wishlist
Owner: Nilesh Patra
X-Debbugs-Cc: debian-de...@lists.debian.org, nil...@debian.org
* Package name: r-cran-genoplotr
Version : 0.8.11
Upstream Author : Lionel Guy
* URL : https://cran.r-project.org/package=genoPlotR
* License
Package: wnpp
Severity: wishlist
Owner: Nilesh Patra
X-Debbugs-Cc: debian-de...@lists.debian.org, nil...@debian.org
* Package name: fastani
Version : 1.32-1
Upstream Author : Georgia Institute of Technology
* URL : https://github.com/ParBLiSS/FastANI
* License
Package: wnpp
Severity: wishlist
Owner: Nilesh Patra
X-Debbugs-Cc: debian-de...@lists.debian.org, nil...@debian.org
* Package name: r-cran-svmisc
Version : 1.1.0
Upstream Author : Philippe Grosjean
* URL : https://cran.r-project.org/package=svMisc
* License
Package: wnpp
Severity: wishlist
Owner: Nilesh Patra
X-Debbugs-Cc: debian-de...@lists.debian.org, nil...@debian.org
* Package name: r-bioc-qtlizer
Version : 1.4.0+dfsg
Upstream Author : Matthias Munz
* URL : https://bioconductor.org/packages/Qtlizer/
* License
Package: wnpp
Severity: wishlist
Owner: Nilesh Patra
X-Debbugs-Cc: debian-de...@lists.debian.org, nil...@debian.org
* Package name: r-bioc-netsam
Version : 1.30.0
Upstream Author : Jing Wang
* URL : https://bioconductor.org/packages/NetSAM
* License : LGPL-2
Package: wnpp
Severity: wishlist
Owner: Nilesh Patra
X-Debbugs-Cc: debian-de...@lists.debian.org, nil...@debian.org
* Package name: pullseq
Version : 1.0.2
Upstream Author : Brian C. Thomas
* URL : https://github.com/bcthomas/pullseq/releases
* License
Package: wnpp
Severity: wishlist
Owner: Nilesh Patra
X-Debbugs-Cc: debian-de...@lists.debian.org, nil...@debian.org
* Package name: r-cran-sampling
Version : 2.9
Upstream Author : Yves Tille , Alina Matei
* URL : https://cran.r-project.org/package=sampling
* License
Package: wnpp
Severity: wishlist
Owner: Nilesh Patra
X-Debbugs-Cc: debian-de...@lists.debian.org, nil...@debian.org
* Package name: ssshtest
Version : 0.0+git20190416.6f5438a
Upstream Author : Ryan Layer
* URL : https://github.com/ryanlayer/ssshtest.git
* License
Package: wnpp
Severity: wishlist
Owner: Nilesh Patra
X-Debbugs-Cc: debian-de...@lists.debian.org, nil...@debian.org
* Package name: ntcard
Version : 1.2.2+dfsg
Upstream Author : Hamid Mohamadi
* URL : https://github.com/bcgsc/ntCard
* License : Expat
Package: ecopcr
Version: 1.0.1+dfsg-2
Severity: wishlist
X-Debbugs-Cc: nil...@debian.org
Dear Maintainer,
Please provide autopkgtest for this package.
-- System Information:
Debian Release: bullseye/sid
APT prefers testing
APT policy: (500, 'testing')
Architecture: amd64 (x86_64)
Kernel:
Package: pique
Version: 1.0-2
Severity: wishlist
Tags: newcomer
X-Debbugs-Cc: nil...@debian.org
Dear Maintainer,
It would be a nice addition for the package to have some test
suite "autopkgtest" available.
-- System Information:
Debian Release: bullseye/sid
APT prefers unstable
APT policy:
Package: hinge
Version: 5.0-6+b2
Severity: wishlist
X-Debbugs-Cc: nil...@debian.org
Dear Maintainer,
It would be a nice addition for the package to have some test
suite "autopkgtest" available.
-- System Information:
Debian Release: bullseye/sid
APT prefers unstable
APT policy: (500,
Package: sift
Version: 4.0.3b-6
Severity: wishlist
X-Debbugs-Cc: nil...@debian.org
Dear Maintainer,
Please provide autopkgtest for this package.
-- System Information:
Debian Release: bullseye/sid
APT prefers testing
APT policy: (500, 'testing')
Architecture: amd64 (x86_64)
Kernel: Linux
Package: fsm-lite
Version: Please provide autopkgtest
Severity: wishlist
X-Debbugs-Cc: nil...@debian.org
Dear Maintainer,
Please provide autopkgtest for this package.
-- System Information:
Debian Release: bullseye/sid
APT prefers testing
APT policy: (500, 'testing')
Architecture: amd64
Package: bustools
Version: 0.40.0-4
Severity: wishlist
X-Debbugs-Cc: nil...@debian.org
Dear Maintainer,
Please provide autopkgtest for this package.
-- System Information:
Debian Release: bullseye/sid
APT prefers testing
APT policy: (500, 'testing')
Architecture: amd64 (x86_64)
Kernel:
Hi,
On Thu, 1 Apr 2021 20:53:00 +0200 Paul Gevers wrote:
> Your package has an autopkgtest, great. However, I looked into
> the history of your autopkgtest [1] and I noticed version 1.5.3-2 fails
> regularly on amd64, while sporadically a rerun passes. I copied some of
> the output at the
On 4/6/21 12:29 AM, Étienne Mollier wrote:
> Hi Paul, Hi Nilesh,
> feel also free to grant dm rights if you feel
> appropriate.
Done
signature.asc
Description: OpenPGP digital signature
Package: wnpp
Severity: wishlist
Owner: Nilesh Patra
X-Debbugs-Cc: debian-de...@lists.debian.org, nil...@debian.org
* Package name: nxtrim
Version : 0.4.3+dfsg
Upstream Author : Illumina, Inc.
* URL : https://github.com/sequencing/NxTrim
* License : BSD
Package: wnpp
Severity: wishlist
Owner: Nilesh Patra
X-Debbugs-Cc: debian-de...@lists.debian.org, nil...@debian.org
* Package name: r-bioc-ballgown
Version : 2.22.0+dfsg
Upstream Author : Jack Fu
* URL : https://bioconductor.org/packages/ballgown
* License
Package: wnpp
Severity: wishlist
Owner: Nilesh Patra
X-Debbugs-Cc: debian-de...@lists.debian.org, nil...@debian.org
* Package name: r-cran-uniqtag
Version : 1.0
Upstream Author : Shaun Jackman
* URL : https://cran.r-project.org/package=uniqtag
* License
Package: wnpp
Severity: wishlist
Owner: Nilesh Patra
X-Debbugs-Cc: debian-de...@lists.debian.org, nil...@debian.org
* Package name: r-bioc-ioniser
Version : 2.14.0+dfsg
Upstream Author : Mike Smith
* URL : https://bioconductor.org/packages/IONiseR
* License
Package: wnpp
Severity: wishlist
Owner: Nilesh Patra
X-Debbugs-Cc: debian-de...@lists.debian.org, nil...@debian.org
* Package name: fastq-pair
Version : 1.0
Upstream Author : Rob Edwards
* URL : https://github.com/linsalrob/fastq-pair
* License : Expat
On Fri, 26 Mar 2021 at 02:48, Andreas Tille wrote:
> I'll do so for every package I'm touching and would have probably done
> soon for this package. However, what I would love even more if someone
> would fix inject-into-salsa-git to approach this automatically.
>
I wonder if there is a
Package: subread
Version: 2.0.1+dfsg-1
Severity: normal
Tags: patch
User: debian-cr...@lists.debian.org
Usertags: ftcbfs
X-Debbugs-Cc: nil...@debian.org
Dear Maintainer,
Subread has a unsatisfiable dep on python3. Since python3 and bc are
used only for tests, they can easily be annotated with .
Package: mash
Version: 2.2.2+dfsg-2
Severity: normal
Tags: patch
User: debian-cr...@lists.debian.org
Usertags: ftcbfs
X-Debbugs-Cc: nil...@debian.org
Dear Maintainer,
Mash currently has cross-satisfiablity issues, due to python3-sphinx in
B-D. Since python3-sphinx is used for documentation, and
Package: smalt
Version: 0.7.6-9
Severity: important
X-Debbugs-Cc: nil...@debian.org
Dear Maintainer,
On running with NOCHECK build opts and profile nocheck enabled, smalt
Fails to build from source with:
dh binary
dh_testroot
dh_prep
debian/rules override_dh_auto_install
make[1]:
Package: seqprep
Version: 1.3.2-5
Severity: normal
X-Debbugs-Cc: nil...@debian.org
Dear Maintainer,
seqprep has a B-D on markdown, which needs to be marked 'M-A: foreign',
check #982406. But in any case, a maintainer html can be easily
maintained, thus mitigating the problem anyway.
It also has
Package: src:purify
Severity: important
X-Debbugs-Cc: nil...@debian.org
Dear Maintainer,
Hi,
src:purify uses DEB_BUILD_MULTIARCH for installation paths. Using this
is never right, it should almost always be DEB_HOST_MULTIARCH instead.
using DEB_BUILD_MULTIARCH also breaks cross builds. More
Source: bmtk
Version: 0.0+git20210109.8572664+ds-1
Severity: normal
User: reproducible-bui...@lists.alioth.debian.org
Usertags: randomness
X-Debbugs-Cc: nil...@debian.org, reproducible-b...@lists.alioth.debian.org
Dear Maintainer,
Currently bmtk fails to build reproducibly, this is due to sphinx
Hi,
On Sat, 13 Mar 2021 at 21:23, Andreas Metzler wrote:
> On 2021-03-13 Nilesh Patra wrote:
> > On Sat, 21 Jan 2017 07:34:35 +0100 Daniel Stender <
> deb...@danielstender.com> wrote:
> [...]
> > > libvigraimpex doesn't build reproducible [1] because the build
Hi Daniel,
On Sat, 21 Jan 2017 07:34:35 +0100 Daniel Stender
wrote:
> Source: libvigraimpex
> Severity: important
> User: reproducible-bui...@lists.alioth.debian.org
> Usertags: buildpath
>
> libvigraimpex doesn't build reproducible [1] because the build path is
> captured during build [2].
Package: pigx-rnaseq
Version: 0.0.10+ds-2
Severity: normal
Tags: patch
User: reproducible-bui...@lists.alioth.debian.org
Usertags: usrmerge
X-Debbugs-Cc: nil...@debian.org, reproducible-b...@lists.alioth.debian.org
Dear Maintainer,
When built on usrmerge system, the binaries gunzip and sed end
Package: xbs
Version: 0-10
Severity: normal
Tags: patch
User: reproducible-bui...@lists.alioth.debian.org
Usertags: umask
X-Debbugs-Cc: nil...@debian.org, reproducible-b...@lists.alioth.debian.org
Dear Maintainer,
Hi
Currently xbs fails to build reproducibly because varying file creation
masks
Package: wordnet
Version: 1:3.0-36
Severity: normal
Tags: patch
User: reproducible-bui...@lists.alioth.debian.org
Usertags: timestamps
X-Debbugs-Cc: nil...@debian.org, reproducible-b...@lists.alioth.debian.org
Dear Maintainer,
Wordnet fails to build reproducibly because it injects date
Package: release.debian.org
Severity: normal
User: release.debian@packages.debian.org
Usertags: unblock
X-Debbugs-Cc: nil...@debian.org, debian-med-packag...@lists.alioth.debian.org
Please unblock package fsm-lite
(Please provide enough (but not too much) information to help
the release team
compiler
+Author: Nilesh Patra
+Last-Update: 2021-03-17
+--- a/make_unix.sh
b/make_unix.sh
+@@ -25,7 +25,7 @@
+
+ # the actual compile
+ echo "compiling using $CC..." >&2
+-$CC -Wall -pedantic $CFLAGS $CPPFLAGS $LDFLAGS src/tools/txt2c.c `pkg-config
--cflags lua5.3` -
On Wed, 17 Mar 2021 at 19:42, Helmut Grohne wrote:
> Hi Nilesh,
>
> On Wed, Mar 17, 2021 at 07:09:28PM +0530, Nilesh Patra wrote:
> > --- /dev/null
> > +++ b/debian/patches/cross.patch
> > @@ -0,0 +1,15 @@
> > +Description: Do not hardcode pkg-config, build
On 18 March 2021 8:22:54 pm IST, Andrius Merkys wrote:
>Hello,
>
>On 2021-03-15 13:45, Pirate Praveen wrote:
>> On 2021, മാർച്ച് 15 4:21:37 PM IST, Nilesh Patra
>wrote:
>>>> $ node-sass
>>>> /usr/share/nodejs/normalize-package-data/lib/fix
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,10 @@
+bioawk (1.0-4) UNRELEASED; urgency=medium
+
+ * d/p/cross.patch: Fix non-cross buildability
+ * Use dpkg buildtools to set CC and CC_FOR_BUILD
+
+ -- Nilesh Patra Wed, 17 Mar 2021 22:23:42 +0530
+
bioawk (1.0-3) unstable; urgency
Package: assembly-stats
Version: 1.0.1+ds-2
Severity: normal
Tags: patch
User: debian-cr...@lists.debian.org
Usertags: ftcbfs
X-Debbugs-Cc: nil...@debian.org
Dear Maintainer,
assembly-stats FTCBFS due to two reasons:
* It forces compilation of test files, report with patch has
Package: assembly-stats
Version: 1.0.1+ds-2
Severity: important
X-Debbugs-Cc: nil...@debian.org
Control: tags -1 patch
Dear Maintainer,
assembly-stats natively FTBFS reason being it forcefully compiles test
files, while the test dependency libgtest-dev is annotated with
It should respect the
control: tags -1 patch
Fixed in the commit:
https://salsa.debian.org/science-team/fplll/-/commit/af75e051c4ffd116b0d7ed0eb1e38dacee913123
and can be uploaded post bullseye release.
Nilesh
Package: frogdata
Severity: normal
X-Debbugs-Cc: nil...@debian.org
Dear Maintainer,
Frogata does not have any arch:any deps, and the maintscript removes
some conffiles which is not arch dependent in any way, hence this can be
marked M-A:foreign
It has already been done in salsa here[1] but not
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