Bug#1074222: pycorrfit FTBFS with Python 3.12 as default

2024-07-05 Thread Alex Mestiashvili
Hi All, AFAIK pycorrfit GUI should know about the location of the pdf file. Though it is a minor issue. Please feel free to upload, otherwise I'll try to have a look the next week. Thanks, Alex On 7/5/24 15:27, Bo YU wrote: Hi, On Fri, Jul 5, 2024 at 1:55 PM Andreas Tille wrote: Control:

Bug#969597: libzstd: Please correct version in symbol file

2021-01-13 Thread Alex Mestiashvili
Hi Andreas, On 1/11/21 5:49 PM, Andreas Tille wrote: Hi Alex, On Mon, Jan 11, 2021 at 02:48:50PM +0100, Alex Mestiashvili wrote: No, I didn't correct this specific issue. Just added the new symbols from the new release. However a patch or a list of "all" symbols is very welc

Bug#969597: libzstd: Please correct version in symbol file

2021-01-11 Thread Alex Mestiashvili
Hi Andreas, On 1/7/21 4:51 PM, Andreas Tille wrote: Hi Alex, did you possibly by chance forgot to close #969597 in your latest upload of libzstd 1.4.8+dfsg-1 ? Kind regards Andreas. No, I didn't correct this specific issue. Just added the new symbols from the new release. However

Bug#934600: [Debian-med-packaging] Bug#934600: gffread in cufflinks seems to be the same codebase but older

2019-08-20 Thread Alex Mestiashvili
On 8/20/19 7:16 AM, Andreas Tille wrote: > Hi Alexandre, > > it looks as if the gffread code in cufflinks would be the > same code base but the code in gffread source seems to be > more recent. What do you think? > > Kind regards > > Andreas. > > - Forwarded message from Debian te

Bug#930796: spindown_time and force_spindown_time are broken in hdparm 9.58+ds-1

2019-06-24 Thread Alex Mestiashvili
On 6/20/19 8:42 PM, Sébastien Béhuret wrote: > Package: hdparm > Version: 9.58+ds-1 > Severity: serious > > Dear Maintainers, > > In this version of hdparm, a new option 'force_spindown_time' was > introduced to set the spindown time for disks that don't support APM. > This option is supposed t

Bug#917713: [Debian-med-packaging] Bug#917713: pyscanfcs: FTBFS: dh_auto_test: pybuild --test -i python{version} -p 3.7 returned exit code 13

2018-12-31 Thread Alex Mestiashvili
On 12/30/18 3:58 PM, Andreas Tille wrote: > Hi, > > only time for a short notice but that's actually a consequence of > #917353. > > Kind regards > > Andreas. > Hi Andreas, thank you for the update, do you think it will make sense to re-upload pyscanfcs to trigger rebuild? Best, Alex

Bug#914051: Discussion on python-freecontact FTBFS

2018-12-14 Thread Alex Mestiashvili
>In the end we decided to not add additional compatibility links. >However, the change on your side should be really small: just remove >"-py" from "boost_python-py" in the setup.py file[1]. > > [1] https://sources.debian.org/src/python-freecontact/1.1-3/setup.py/#L34 > >Please let me know if there

Bug#902132: [Debian-med-packaging] Bug#902132: falcon: FTBFS since python-networkx version 2.1-1; fails in test suite

2018-09-12 Thread Alex Mestiashvili
Well, according upstream, current repository is not active anymore: Oh, sorry. We are no longer mirroring our internal FALCON repo here. In fact, I think this Issues board will disappear soon too, in favor of pbbioconda. So I think your source-code is way out of date. Unfortunately, my hands are

Bug#902132: falcon: FTBFS since python-networkx version 2.1-1; fails in test suite

2018-09-11 Thread Alex Mestiashvili
Hi Andreas, I've pushed some commits and opened upstream issue[0]. Also it seems that falcon depends on python-future >=0.16.0 which is not yet available - #863215. [0] https://github.com/PacificBiosciences/FALCON/issues/672 Best regards, Alex

Bug#902820: gmap: FTBFS on stretch/amd64 if CPU has SSE2 and nothing more

2018-09-03 Thread Alex Mestiashvili
I believe the bug is fixed in just uploaded version 2018-07-04-3 The package is non-free and thus autobuilding is not enabled. I've asked nonf...@release.debian.org to mark gmap as autobuildable, but haven't got an answer so far. Regards Alex

Bug#902820: [Debian-med-packaging] Bug#902820: gmap: FTBFS on stretch/amd64 if CPU has SSE2 and nothing more

2018-07-18 Thread Alex Mestiashvili
> AFAIK on Debian/amd64 only SSE2 is allowed to be assumed by default. > > I tried to compare my build logs with official ones, but there is none: > > https://buildd.debian.org/status/package.php?p=gmap > > (( Could you please consider source-only uploads? i.e. "dpkg-buildpackage -S" > )). I

Bug#903793: libgmap1-dev: broken symlink: /usr/lib/x86_64-linux-gnu/libgmap.so -> libgmap.so.1.0.0

2018-07-17 Thread Alex Mestiashvili
Hi Andreas, On 07/17/2018 08:19 AM, Andreas Tille wrote: > Hi Alexandre, > > On Sat, Jul 14, 2018 at 11:41:01PM +0200, Andreas Beckmann wrote: >> Depends: gmap (= 2017-11-15-1) | libgmap1 (= 2017-11-15-1) >> >> which does not sound like a good idea if gmap does not provide the required >> shared

Bug#880347: bug squashing target: Probably bowtie 1.2.1.1 issue (Was: Bug#880347: bioperl-run: FTBFS: Test failures)

2017-12-07 Thread Alex Mestiashvili
> ... > # Failed test 'bowtie success' > # at t/Bowtie.t line 188. > # '# reads processed: 2000 > # # reads with at least one reported alignment: 2000 (100.00%) > # # reads that failed to align: 0 (0.00%) > # Reported 1000 paired-end alignments to 1 output stream(s) > # ' > #

Bug#871234: Set Bug forwarded-to-address to 'https://github.com/cole-trapnell-lab/cufflinks/issues/89'

2017-08-28 Thread Alex Mestiashvili
forwarded 871234 https://github.com/cole-trapnell-lab/cufflinks/issues/89

Bug#833493: cufflinks: FTBFS with gcc-6

2016-08-16 Thread Alex Mestiashvili
, I'll open an issue on github. Thanks, Alex > > Kind regards > > Andreas. > > On Tue, Aug 16, 2016 at 12:47:22PM +0200, Alex Mestiashvili wrote: >> Hi Andreas, >> >> On 08/16/2016 09:19 AM, Andreas Tille wrote: >>> Hi Graham, >>> &

Bug#833493: cufflinks: FTBFS with gcc-6

2016-08-16 Thread Alex Mestiashvili
Hi Andreas, On 08/16/2016 09:19 AM, Andreas Tille wrote: > Hi Graham, > > thanks for your hint. Alexandre, what do you think about it? Feel free > to move my changes to a separate branch and try Graham's approach if you > think this is OK. I think it is better to keep the embedded copy of lib

Bug#824657: libpam-abl: Fatal system lockout with libpam-abl installed

2016-05-19 Thread Alex Mestiashvili
Thank you for the report! the upload of the fixed version is in progress. Best regards, Alex

Bug#780940: hdparm freezes the system's start up

2016-03-03 Thread Alex Mestiashvili
Dear Víctor, do you have a chance to test the new upstream release of hdparm ? it is not yet in the Debian distribution, but the source is available here: http://anonscm.debian.org/cgit/collab-maint/hdparm.git You will need to clone the repository and build the package. Thank you in advance, Al

Bug#797280: [Debian-med-packaging] Bug#797280: cufflinks ftbfs in unstable

2015-09-05 Thread Alex Mestiashvili
On 08/29/2015 10:27 AM, Matthias Klose wrote: > Package: src:cufflinks > Version: 2.2.1-1 > Severity: serious > Tags: sid stretch > > cufflinks ftbfs in unstable, log attached. > > > > ___ > Debian-med-packaging mailing list > debian-med-packag...@lists.a

Bug#788294: rex,rexical: error when trying to install together

2015-06-15 Thread Alex Mestiashvili
Hi Balasankar, Our packages have a name conflict - /usr/bin/rex. Please see the initial bug report: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=788294 Would you mind renaming the rex from rexical package to something else? rexical seem to be a good name for example. Alternatively I can c

Bug#784782: [Debian-med-packaging] Bug#784782: subread: FTBFS when not building subread-data

2015-05-08 Thread Alex Mestiashvili
On 05/08/2015 08:51 PM, Aaron M. Ucko wrote: > Source: subread > Version: 1.4.6-p2+dfsg-1 > Severity: serious > Justification: fails to build from source > > Builds of subread covering only its main architecture-dependent binary > package (as on the autobuilders, or with debuild -B) have been > fai

Bug#733352: [Debian-med-packaging] Bug#733352: Bowtie and tophat fail to build with seqan >= 1.4

2014-07-07 Thread Alex Mestiashvili
Patch provided by Manuel Holtgrewe solves the build issues with seqan-1.4 and tophat. https://lists.fu-berlin.de/pipermail/seqan-dev/2014-July/msg1.html Alex -- To UNSUBSCRIBE, email to debian-bugs-rc-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@li

Bug#733352: help needed for #733352

2014-04-11 Thread Alex Mestiashvili
On 04/11/2014 12:29 AM, Diane Trout wrote: On Thursday, April 10, 2014 15:30:21 Alex Mestiashvili wrote: Dear mentors, I would greatly appreciate if somebody would help with the #733352, I've spent a couple of hours trying to resolve the issue but my cpp skills are rather poor. Than

Bug#742409: libsereal-encoder-perl: FTBFS on some architectures

2014-03-27 Thread Alex Mestiashvili
Forwarded to upstream: https://github.com/Sereal/Sereal/issues/47 Alex

Bug#707416: tophat: FTBFS: (.text+0x1732): undefined reference to `pthread_create'

2013-05-14 Thread Alex Mestiashvili
After another look it seems to me that the real problem is #695826. The new boost 1.49.0-4 is on the way to sid, let's see if it will be autofixed. Regards, Alex

Bug#672090: [Debian-med-packaging] Bug#672090: bowtie2: FTBFS: word_io.h:86:27: error: 'read' was not declared in this scope

2012-05-09 Thread Alex Mestiashvili
On 05/08/2012 01:36 PM, Lucas Nussbaum wrote: > Source: bowtie2 > Version: 2.0.0-beta5-1 > Severity: serious > Tags: wheezy sid > User: debian...@lists.debian.org > Usertags: qa-ftbfs-20120508 qa-ftbfs > Justification: FTBFS on amd64 > > Hi, > > During a rebuild of all packages in sid, your package

Bug#655119: libpam-abl: FTBFS(32bit): error: format '%ld' expects argument of type 'long int', but argument 3 has type 'u_int32_t'

2012-01-08 Thread Alex Mestiashvili
On 01/08/2012 06:25 PM, Christoph Egger wrote: > Package: src:libpam-abl > Version: 0.4.2-1 > Severity: serious > Tags: sid wheezy > Justification: fails to build from source (but built successfully in the past) > > Hi! > > Your package failed to build on the buildds: > > pam_abl.c: In function 'do

Bug#511593: mysql-server-5.1: missing dependency g++

2009-01-12 Thread Alex Mestiashvili
Package: mysql-server-5.1 Version: 5.1.30-2 Severity: serious Justification: no longer builds from source *** Please type your report below this line *** missing dependency g++ from control file g++ -DDEFAULT_BASEDIR=\"/usr\" -DDATADIR="\"/var/lib/mysql\"" -DDEFAULT_CHARSET_HOME="\"/usr\"" -DSHA