Bug#1080988: src:r-cran-pbkrtest: fails to migrate to testing for too long: new Build-Depends not ready to migrate

2024-09-06 Thread Dirk Eddelbuettel
Hi Paul, On 6 September 2024 at 17:24, Paul Gevers wrote: | Hi Dirk, | | On 06-09-2024 15:19, Dirk Eddelbuettel wrote: | > If you think there is anything I could or should do let me know. I packaged | > the newest upstream version, and looked after its dependencies. | | You could che

Bug#1080988: src:r-cran-pbkrtest: fails to migrate to testing for too long: new Build-Depends not ready to migrate

2024-09-06 Thread Dirk Eddelbuettel
On 6 September 2024 at 14:36, Paul Gevers wrote: | Source: r-cran-pbkrtest | Version: 0.5.2-2 | Severity: serious | Control: close -1 0.5.3-1 | Tags: sid trixie | User: release.debian@packages.debian.org | Usertags: out-of-sync | | Dear maintainer(s), | | The Release Team considers packages

Bug#1079526: sprng: lost gmp symbols cause ftbfs in tree-puzzle

2024-08-26 Thread Dirk Eddelbuettel
On 24 August 2024 at 11:45, Étienne Mollier wrote: | Source: sprng | Version: 2.0a-15 | Severity: serious | Tags: patch upstream | Justification: causes reverse dependency to ftbfs | Control: affects -1 tree-puzzle | Control: block 1075584 by -1 | | Dear Maintainer, | | dh_shlibdeps reports mul

Bug#1077743: sprng: FTBFS in trixie, has undeclared build-depends on gcc-14

2024-08-01 Thread Dirk Eddelbuettel
On 1 August 2024 at 13:11, Santiago Vila wrote: | Package: src:sprng | Version: 2.0a-14 | Severity: serious | Tags: ftbfs patch | | Dear maintainer: | | The current package FTBFS in trixie: | | https://tests.reproducible-builds.org/debian/rbuild/trixie/amd64/sprng_2.0a-14.rbuild.log.gz | | m

Bug#1074993: ggobi: ftbfs with GCC-14

2024-07-29 Thread Dirk Eddelbuettel
Now fixed in 2.1.12-1, but I forgot to add a 'Closes: ...' in time. Dirk -- dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org

Bug#1077355: gretl: FTBFS: ../lib/src/interact.c:2131:19: error: implicit declaration of function 'try_http' [-Wimplicit-function-declaration]

2024-07-28 Thread Dirk Eddelbuettel
On 28 July 2024 at 20:52, Cottrell, Allin wrote: | On Sun, Jul 28, 2024 at 3:33 PM Dirk Eddelbuettel wrote: | > | > | > On 28 July 2024 at 15:11, Cottrell, Allin wrote: | > | On Sun, Jul 28, 2024 at 1:29 PM Dirk Eddelbuettel wrote: | [...] | > | > | > ../lib/src/in

Bug#1077355: gretl: FTBFS: ../lib/src/interact.c:2131:19: error: implicit declaration of function 'try_http' [-Wimplicit-function-declaration]

2024-07-28 Thread Dirk Eddelbuettel
On 28 July 2024 at 15:11, Cottrell, Allin wrote: | On Sun, Jul 28, 2024 at 1:29 PM Dirk Eddelbuettel wrote: | > | > | > On 28 July 2024 at 18:27, Lucas Nussbaum wrote: | > | Source: gretl | > | Version: 2024b-1 | > | Severity: serious | > | Justification: FTBFS | >

Bug#1077355: gretl: FTBFS: ../lib/src/interact.c:2131:19: error: implicit declaration of function 'try_http' [-Wimplicit-function-declaration]

2024-07-28 Thread Dirk Eddelbuettel
On 28 July 2024 at 18:27, Lucas Nussbaum wrote: | Source: gretl | Version: 2024b-1 | Severity: serious | Justification: FTBFS | Tags: trixie sid ftbfs | User: lu...@debian.org | Usertags: ftbfs-20240727 ftbfs-trixie | | Hi, | | During a rebuild of all packages in sid, your package failed to bui

Bug#1076615: r-cran-metamix: autopkgtest regression with rmpi 0.7-2-2 (armel,armhf,i386)

2024-07-19 Thread Dirk Eddelbuettel
Source: r-cran-metamix Version: 0.3-2 Severity: serious Dear Maintainers, Your package r-cran-metamix is showing an autopkg regression with the updated rmpi (aka r-cran-rmpi) package I maintain, and is blocking it. Upstream at CRAN 32 bit operating systems are no longer checked (and one go furt

Bug#1075978: rmpi: FTBFS on 32 bit architectures: configure: error: "Cannot find mpi.h header file"

2024-07-09 Thread Dirk Eddelbuettel
On 9 July 2024 at 18:42, Adrian Bunk wrote: | On Tue, Jul 09, 2024 at 10:34:43AM -0500, Dirk Eddelbuettel wrote: | > | > Adrian, | | Hi Dirk, | | > Will the patch to configure.ac, with the build system as it is, ensure | > autoconf is called or should I do that manually and henc

Bug#1075978: rmpi: FTBFS on 32 bit architectures: configure: error: "Cannot find mpi.h header file"

2024-07-09 Thread Dirk Eddelbuettel
Adrian, Will the patch to configure.ac, with the build system as it is, ensure autoconf is called or should I do that manually and hence also patch configure? Dirk -- dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org

Bug#1075978: rmpi: FTBFS on 32 bit architectures: configure: error: "Cannot find mpi.h header file"

2024-07-08 Thread Dirk Eddelbuettel
On 9 July 2024 at 04:10, Adrian Bunk wrote: | Control: tags -1 patch | | On Mon, Jul 08, 2024 at 03:30:17PM -0500, Dirk Eddelbuettel wrote: | > | > On 8 July 2024 at 22:09, Sebastian Ramacher wrote: | > | Source: rmpi | > | Version: 0.7-2-1 | > | Severity: serious |

Bug#1075978: rmpi: FTBFS on 32 bit architectures: configure: error: "Cannot find mpi.h header file"

2024-07-08 Thread Dirk Eddelbuettel
On 8 July 2024 at 22:09, Sebastian Ramacher wrote: | Source: rmpi | Version: 0.7-2-1 | Severity: serious | Tags: ftbfs | Justification: fails to build from source (but built successfully in the past) | X-Debbugs-Cc: sramac...@debian.org | | https://buildd.debian.org/status/fetch.php?pkg=rmpi&ar

Bug#1071523: r-cran-spatstat.geom: autopkgtest regression in testing

2024-07-02 Thread Dirk Eddelbuettel
On 3 July 2024 at 07:18, Andreas Tille wrote: | Am Tue, Jul 02, 2024 at 09:32:43PM + schrieb Graham Inggs: | > > We did not implemented any hooks to realise this yet. | > | > Wouldn't removing the following line from debian/control do it? | > | > Testsuite: autopkgtest-pkg-r | | Well, sure

Bug#1074529: r-cran-dimred: autopkgtest regression with r-base 4.4.1 (i386)

2024-06-30 Thread Dirk Eddelbuettel
On 30 June 2024 at 12:17, Graham Inggs wrote: | Source: r-cran-dimred | Version: 0.2.6-1 | Severity: serious | Tags: trixie sid | X-Debbugs-Cc: Dirk Eddelbuettel | User: debian...@lists.debian.org | Usertags: regression | | Hi Maintainer | | r-cran-dimred's autopkgtest regresses when t

Bug#1074528: r-bioc-eir: autopkgtest regression with r-base 4.4.1 (i386)

2024-06-30 Thread Dirk Eddelbuettel
On 30 June 2024 at 12:13, Graham Inggs wrote: | Source: r-bioc-eir | Version: 0.40.2+dfsg-1 | Severity: serious | X-Debbugs-Cc: Dirk Eddelbuettel | User: debian...@lists.debian.org | Usertags: regression | | Hi Maintainer | | r-bioc-eir's autopkgtest regresses when tested with r-base 4.4

Bug#1072650: RM: quantlib-python [riscv64] -- RoM

2024-06-21 Thread Dirk Eddelbuettel
Package: ftp.debian.org Severity: normal As of the last release, quantlib-python no longer builds on riscv64 within the 600 minute window. The source package quantlib-swig, using source package libquantlib-dev, puts considerable strain on the C++ compiler and system and several architectures hav

Bug#1072650: src:quantlib-swig: fails to migrate to testing for too long: FTBFS on armel, armhf, i386 and riscv64

2024-06-20 Thread Dirk Eddelbuettel
On 20 June 2024 at 12:16, Bo YU wrote: | hi, | | On Mon, Jun 17, 2024 at 7:16 AM Bo YU wrote: | > | > Hi, | > | > On Mon, Jun 17, 2024 at 6:41 AM Dirk Eddelbuettel wrote: | > > | > > | > > Hi Paul, | > > | > > Thanks for the prompt and detailed r

Bug#1072650: src:quantlib-swig: fails to migrate to testing for too long: FTBFS on armel, armhf, i386 and riscv64

2024-06-16 Thread Dirk Eddelbuettel
Hi Paul, Thanks for the prompt and detailed reply. On 16 June 2024 at 16:13, Paul Gevers wrote: | Hi Dirk, | | On 16-06-2024 2:42 p.m., Dirk Eddelbuettel wrote: | > I may need a hgand with riscv64. | | That's normally a question to the porters, in CC now, so they can have a

Bug#1072650: src:quantlib-swig: fails to migrate to testing for too long: FTBFS on armel, armhf, i386 and riscv64

2024-06-16 Thread Dirk Eddelbuettel
Paul, Graham, I may need a hgand with riscv64. The 1.34-1 revision needed some build changes I had done poorly in such a way that the -O0 no longer applied to some arches, this has been fixed in 1.34-2 so armel, armhf, i386 are good. But riskv64 still times out. Can we expand the build-time wi

Bug#1072979: beast-mcmc - build-dependencies unsatisfiable on i386.

2024-06-11 Thread Dirk Eddelbuettel
On 11 June 2024 at 10:05, Peter Green wrote: | Package: beast-mcmc | Version: 1.10.4+dfsg-5 | Severity: serious | x-debbugs-cc: r-cran-rj...@packages.debian.org | | beast-mcmc build-depends on r-cran-rjava, which is no longer available | on i386. It appears that the package failed to build, and

Bug#1072648: src:survival: fails to migrate to testing for too long: triggers autopkgtest issues in r-cran-popepi which needs an update

2024-06-06 Thread Dirk Eddelbuettel
On 6 June 2024 at 08:22, Johannes Ranke wrote: | Am Mittwoch, 5. Juni 2024, 22:27:09 CEST schrieb Dirk Eddelbuettel: | > On 5 June 2024 at 21:55, Paul Gevers wrote: | > | Source: survival | > | Version: 3.5-8-1 | > | Severity: serious | > | Control: close -1 3.6-4-1 | >

Bug#1072650: src:quantlib-swig: fails to migrate to testing for too long: FTBFS on armel, armhf, i386 and riscv64

2024-06-05 Thread Dirk Eddelbuettel
On 5 June 2024 at 21:57, Paul Gevers wrote: | Source: quantlib-swig | Version: 1.33-1 | Severity: serious | Control: close -1 1.34-1 | Tags: sid trixie ftbfs | User: release.debian@packages.debian.org | Usertags: out-of-sync | | Dear maintainer(s), | | The Release Team considers packages th

Bug#1072648: src:survival: fails to migrate to testing for too long: triggers autopkgtest issues

2024-06-05 Thread Dirk Eddelbuettel
On 5 June 2024 at 21:55, Paul Gevers wrote: | Source: survival | Version: 3.5-8-1 | Severity: serious | Control: close -1 3.6-4-1 | Tags: sid trixie | User: release.debian@packages.debian.org | Usertags: out-of-sync | | Dear maintainer(s), | | The Release Team considers packages that are ou

Bug#1071362: rpy2: FTBFS: rpy2/tests/rinterface/test_embedded_r.py s.......Fatal Python error: Segmentation fault

2024-05-26 Thread Dirk Eddelbuettel
We are still having the open issue of rpy2 now segfaulting on the embedding tests which reproduces on my plain vanilla amd64 setup -- so I commented that test out too. Laurent: Any idea why R 4.4.0 and rpy2 do not get along on embedding? Cheers, Dirk -- dirk.eddelbuettel.com | @eddelbuettel |

Bug#1071362: rpy2: FTBFS: rpy2/tests/rinterface/test_embedded_r.py s.......Fatal Python error: Segmentation fault

2024-05-26 Thread Dirk Eddelbuettel
On 25 May 2024 at 12:35, Bo YU wrote: | Hi, | On Sat, May 18, 2024 at 06:41:53AM -0500, Dirk Eddelbuettel wrote: | > | >On 17 May 2024 at 23:05, Santiago Vila wrote: | >| Dirk Eddelbuettel wrote: | >| > Is there a chance this could be spurious? | >| | >| Unlikely because

Bug#1071362: rpy2 segfaults in tests under Debian bulk rebuild

2024-05-18 Thread Dirk Eddelbuettel
On 18 May 2024 at 07:59, Dirk Eddelbuettel wrote: | | Hi Laurent, | | We a build issue in Debian found via bulk rebuilds. Which everything current | in 'unstable', rpy2 (version 3.5.16) segfaults in a test when embedding. | | Details are at https://bugs.debian.org/1071362 | | If yo

Bug#1071362: rpy2: FTBFS: rpy2/tests/rinterface/test_embedded_r.py s.......Fatal Python error: Segmentation fault

2024-05-18 Thread Dirk Eddelbuettel
On 17 May 2024 at 23:05, Santiago Vila wrote: | Dirk Eddelbuettel wrote: | > Is there a chance this could be spurious? | | Unlikely because it also happens here: | | https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/rpy2.html Ok, I will get in touch with Laurent. D

Bug#1071362: rpy2: FTBFS: rpy2/tests/rinterface/test_embedded_r.py s.......Fatal Python error: Segmentation fault

2024-05-17 Thread Dirk Eddelbuettel
Is there a chance this could be spurious? The R API is reasonably stable, including the part for embedding R (and I am upstream for a small project doing that from C++). rpy2 is also mature and stable. So could this be a one-off? Dirk -- dirk.eddelbuettel.com | @eddelbuettel | e...@debian.o

Bug#1070840: r-cran-ff: autopkgtest regression with r-base 4.4.0

2024-05-10 Thread Dirk Eddelbuettel
On 10 May 2024 at 06:28, Dirk Eddelbuettel wrote: | | On 10 May 2024 at 10:54, Graham Inggs wrote: | | Source: r-cran-ff | | Version: 4.0.12+ds-1 | | Severity: serious | | X-Debbugs-Cc: Dirk Eddelbuettel | | User: debian...@lists.debian.org | | Usertags: regression | | | | Hi Maintainer

Bug#1070842: r-bioc-mutationalpatterns: autopkgtest regression with r-base 4.4.0

2024-05-10 Thread Dirk Eddelbuettel
On 10 May 2024 at 11:01, Graham Inggs wrote: | Source: r-bioc-mutationalpatterns | Version: 3.12.0+dfsg-1 | Severity: serious | X-Debbugs-Cc: Dirk Eddelbuettel | User: debian...@lists.debian.org | Usertags: regression | | Hi Maintainer | | r-bioc-mutationalpatterns' autopkgtest regresses

Bug#1070843: r-bioc-s4vectors: autopkgtest regression with r-base 4.4.0

2024-05-10 Thread Dirk Eddelbuettel
On 10 May 2024 at 11:04, Graham Inggs wrote: | Source: r-bioc-s4vectors | Version: 0.40.2+dfsg-1 | Severity: serious | X-Debbugs-Cc: Dirk Eddelbuettel | User: debian...@lists.debian.org | Usertags: regression | | Hi Maintainer | | r-bioc-s4vectors' autopkgtest regresses when tested w

Bug#1070841: r-bioc-iranges: autopkgtest regression with r-base 4.4.0

2024-05-10 Thread Dirk Eddelbuettel
On 10 May 2024 at 10:58, Graham Inggs wrote: | Source: r-bioc-iranges | Version: 2.36.0-1 | Severity: serious | X-Debbugs-Cc: Dirk Eddelbuettel | User: debian...@lists.debian.org | Usertags: regression | | Hi Maintainer | | r-bioc-iranges' autopkgtest regresses when tested with r-base

Bug#1070840: r-cran-ff: autopkgtest regression with r-base 4.4.0

2024-05-10 Thread Dirk Eddelbuettel
On 10 May 2024 at 10:54, Graham Inggs wrote: | Source: r-cran-ff | Version: 4.0.12+ds-1 | Severity: serious | X-Debbugs-Cc: Dirk Eddelbuettel | User: debian...@lists.debian.org | Usertags: regression | | Hi Maintainer | | r-cran-ff's autopkgtest regresses when tested with r-base 4.4

Bug#1069842: rjava: FTBFS: /usr/bin/ld: cannot find -ldeflate: No such file or directory

2024-04-25 Thread Dirk Eddelbuettel
reassign 1069842 r-base thanks On 25 April 2024 at 18:27, Santiago Vila wrote: | Package: src:rjava | Version: 1.0-11-1 | Severity: serious | Tags: ftbfs | | Dear maintainer: | | During a rebuild of all packages in unstable, your package failed to build: Thanks for this. It is caused by the j

Bug#1066403: R packages failing to build with missing -ltirpc are actually an issue in r-base

2024-03-13 Thread Dirk Eddelbuettel
-Depends to fix build issue from side effects of t64 transition (Closes: #1065216) -- Dirk Eddelbuettel Mon, 04 Mar 2024 08:54:45 -0600 I will take care of it in -3. Dirk -- dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org

Bug#1065216: r-base: recent libc6-dev change causes the xdr feature to be dropped

2024-03-04 Thread Dirk Eddelbuettel
On 1 March 2024 at 23:36, Aurelien Jarno wrote: | Source: r-base | Version: 4.3.3-1 | Severity: serious | Tags: ftbfs | Justification: fails to build from source (but built successfully in the past) | User: debian-gl...@lists.debian.org | Usertags: libtirpc-dev | | Dear maintainer, | | Starting

Bug#1063320: gretl: NMU diff for 64-bit time_t transition

2024-02-28 Thread Dirk Eddelbuettel
On 29 February 2024 at 00:20, Steve Langasek wrote: | Dear maintainer, | | Please find attached a final version of this patch for the time_t | transition. This patch is being uploaded to unstable. | | Note that this adds a versioned build-dependency on dpkg-dev, to guard | against accidental b

Bug#1062364: dieharder: NMU diff for 64-bit time_t transition

2024-02-28 Thread Dirk Eddelbuettel
On 28 February 2024 at 21:28, mwhud...@fastmail.fm wrote: | Dear maintainer, | | Please find attached a final version of this patch for the time_t | transition. This patch is being uploaded to unstable. | | Note that this adds a versioned build-dependency on dpkg-dev, to guard | against accide

Bug#1063320: gretl: NMU diff for 64-bit time_t transition

2024-02-07 Thread Dirk Eddelbuettel
On 6 February 2024 at 06:43, Steve Langasek wrote: | Source: gretl | Version: 2023c-2 | Severity: serious | Tags: patch pending sid trixie | Justification: library ABI skew on upgrade | User: debian-...@lists.debian.org | Usertags: time-t | | NOTICE: these changes must not be uploaded to unstabl

Bug#1062364: dieharder: NMU diff for 64-bit time_t transition

2024-02-07 Thread Dirk Eddelbuettel
On 1 February 2024 at 07:21, mwhud...@debian.org wrote: | Source: dieharder | Version: 3.31.1.4-1 | Severity: serious | Tags: patch pending | Justification: library ABI skew on upgrade | User: debian-...@lists.debian.org | Usertags: time-t | | Dear maintainer, | | As part of the 64-bit time_t t

Bug#1060101: Boost 1.81 removal

2024-01-17 Thread Dirk Eddelbuettel
On 14 January 2024 at 06:49, Dirk Eddelbuettel wrote: | | FYI two days before you filed #1060101 I actually happened to have updated | r-cran-bh to 1.84.0 (upstream, which is me, went to the 1.84.0 version | released in December as Boost releases every four months) using 1.83: | |r-cran-bh

Bug#1060101: Boost 1.81 removal

2024-01-14 Thread Dirk Eddelbuettel
+b2 * debian/control: Set Build-Depends: to current R version * debian/control: Switch to virtual debhelper-compat (= 13) -- Dirk Eddelbuettel Wed, 10 Jan 2024 07:20:09 -0600 So this should sort itself out by itself in a matter of days. r-cran-bh is healthy: https

Bug#1059875: RM: rJava [i386] -- RoM: FTBFS as i386 builds no longer maintained upstream

2024-01-11 Thread Dirk Eddelbuettel
( Resending to now correctly-typed package r-cran-rcdklibs -- Dirk ) On 11 January 2024 at 07:09, Dirk Eddelbuettel wrote: | | Package: ftp.debian.org | Severity: normal | | The rJava package (source package 'rjava', binary package r-cran-rjava) no | longer builds on i386 as m

Bug#1059875: RM: rJava [i386] -- RoM: FTBFS as i386 builds no longer maintained upstream

2024-01-11 Thread Dirk Eddelbuettel
rjava |1.0-6-1 | source rjava | 1.0-10-1 | source Maintainer: Dirk Eddelbuettel --- Reason --- -- Checking reverse dependencies... # Broken Depends: libgoby-java: goby-java r-cran-rcdk: r-cran-rcdk r-

Bug#1059875: src:rjava: fails to migrate to testing for too long: FTBFS on i386

2024-01-02 Thread Dirk Eddelbuettel
(Adrian: Added you to CCs per suggestion of Paul.) Hi Paul, On 2 January 2024 at 21:00, Paul Gevers wrote: | Hi Dirk, | | On 02-01-2024 20:42, Dirk Eddelbuettel wrote: | > | The Release Team considers packages that are out-of-sync between testing | > | and unstable for more than 30 d

Bug#1059875: src:rjava: fails to migrate to testing for too long: FTBFS on i386

2024-01-02 Thread Dirk Eddelbuettel
On 2 January 2024 at 20:07, Paul Gevers wrote: | Source: rjava | Version: 1.0-6-1 | Severity: serious | Control: close -1 1.0-10-1 | Tags: sid trixie ftbfs | User: release.debian@packages.debian.org | Usertags: out-of-sync | | Dear maintainer(s), | | The Release Team considers packages that

Bug#1055922: rmatrix: ABI change in Matrix 1.6-2

2023-11-30 Thread Dirk Eddelbuettel
Hi Graham On 30 November 2023 at 07:54, Graham Inggs wrote: | Hi Dirk | | On Thu, 30 Nov 2023 at 00:51, Dirk Eddelbuettel wrote: | > Ping squared. | > | > If I don't hear from you I may just close this. I believe this (non-, to me) | > issue has been taken care of. If you

Bug#1055922: rmatrix: ABI change in Matrix 1.6-2

2023-11-29 Thread Dirk Eddelbuettel
On 27 November 2023 at 08:27, Dirk Eddelbuettel wrote: | | Graham, | | Quick ping to ask where we are we on this? Matrix is in testing so can this | be closed? Ping squared. If I don't hear from you I may just close this. I believe this (non-, to me) issue has been taken care of. I

Bug#1055922: rmatrix: ABI change in Matrix 1.6-2

2023-11-27 Thread Dirk Eddelbuettel
Graham, Quick ping to ask where we are we on this? Matrix is in testing so can this be closed? Cheers, Dirk -- dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org

Bug#1055922: rmatrix: ABI change in Matrix 1.6-2

2023-11-20 Thread Dirk Eddelbuettel
Hi Graham, On 20 November 2023 at 12:13, Graham Inggs wrote: | On Sun, 19 Nov 2023 at 14:59, Dirk Eddelbuettel wrote: | > So it contains a patch by Mikael which had been applied _permitting Matrix | > 1.6-2_ to get to CRAN. So for this particular pair it was the other way around. | |

Bug#1055922: rmatrix: ABI change in Matrix 1.6-2

2023-11-19 Thread Dirk Eddelbuettel
On 19 November 2023 at 09:59, Dirk Eddelbuettel wrote: | On 19 November 2023 at 13:49, Graham Inggs wrote: | | We don't believe only touching debian/changelog, or a binNMU, is | | sufficient. We were surprised that your r-cran-lme4 upload did not at | | least include: | | Depends: r-cran-m

Bug#1055922: rmatrix: ABI change in Matrix 1.6-2

2023-11-19 Thread Dirk Eddelbuettel
Hi Graham, On 19 November 2023 at 13:49, Graham Inggs wrote: | On Tue, 14 Nov 2023 at 12:42, Dirk Eddelbuettel wrote: | > Doesn't 'normal' do that? | | No, only serious and above are considered RC [1] and also for migration. | | This week, Paul Gevers and I spent some time

Bug#1055922: rmatrix: ABI change in Matrix 1.6-2

2023-11-18 Thread Dirk Eddelbuettel
I will not engage any more with debian-r. But this is now at the BTS so a clarification may be in order. This started as I had sent an email as a heads-up to fellow maintainers (via that mostly pointless list) informing them that their packages would exhibit a bug following a bug in package Matri

Bug#1055922: rmatrix: ABI change in Matrix 1.6-2

2023-11-17 Thread Dirk Eddelbuettel
On 14 November 2023 at 07:42, Dirk Eddelbuettel wrote: | | On 14 November 2023 at 12:26, Graham Inggs wrote: | | Hi Dirk | | | | On Tue, 14 Nov 2023 at 12:01, Dirk Eddelbuettel wrote: | | > Well that seems to be a) the wrong severity and b) the wrong package. | | | | Both are correct. We

Bug#1055922: rmatrix: ABI change in Matrix 1.6-2

2023-11-14 Thread Dirk Eddelbuettel
On 14 November 2023 at 12:26, Graham Inggs wrote: | Hi Dirk | | On Tue, 14 Nov 2023 at 12:01, Dirk Eddelbuettel wrote: | > Well that seems to be a) the wrong severity and b) the wrong package. | | Both are correct. We do not want rmatrix to migrate and break | packages in testing. Does

Bug#1055922: rmatrix: ABI change in Matrix 1.6-2

2023-11-14 Thread Dirk Eddelbuettel
On 14 November 2023 at 09:15, Graham Inggs wrote: | Source: rmatrix | Version: 1.6-2-1 | Severity: serious | X-Debbugs-Cc: debia...@lists.debian.org | | Hi Dirk | | I'm opening this bug as a place for discussion and to track the | affected packages. It can be closed once rmatrix and its | reve

Bug#1054921: [Quantlib-dev] Build error for quantlib-swig on mips64el

2023-10-30 Thread Dirk Eddelbuettel
On 30 October 2023 at 12:23, Luigi Ballabio wrote: | Hello Dirk, unfortunately I have no idea what can cause this — do you think it | possible that the size of the wrappers crossed some threshold and relocations | started to occur that weren't there before? Adrian (CC'ed) supplied a merge reques

Bug#1054921: Build error for quantlib-swig on mips64el

2023-10-29 Thread Dirk Eddelbuettel
The Debian package fails to build now on mipsel, a log is at [1]. The gist seems to be a relocation error: g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -O0 -g0 -mxgot --param ggc-min-expand=20 -DBOOST_NO_AUTO_PTR build/temp.linux-mips64-cpython-311/QuantLib/quantlib_wrap.o -L/usr/lib/mips6

Bug#1054921: quantlib-swig: FTBFS on mips64el

2023-10-28 Thread Dirk Eddelbuettel
On 28 October 2023 at 22:53, Sebastian Ramacher wrote: | Source: quantlib-swig | Version: 1.32-1 | Severity: serious | Tags: ftbfs | Justification: fails to build from source (but built successfully in the past) | X-Debbugs-Cc: sramac...@debian.org | | https://buildd.debian.org/status/fetch.php

Bug#1050432: rpy2: FTBFS on mips64el

2023-08-27 Thread Dirk Eddelbuettel
On 27 August 2023 at 18:44, YunQiang Su wrote: | Maybe there is something wrong with ffi. (In fact the complex support of mips | was added by me. ;) Hah. | I am looking for a way to use debug to debug the extensions. | If you have any documents, can you point it to me. I can help you with R,

Bug#1050432: rpy2: FTBFS on mips64el

2023-08-27 Thread Dirk Eddelbuettel
On 27 August 2023 at 14:09, YunQiang Su wrote: | Dirk Eddelbuettel 于2023年8月27日周日 00:15写道: | > | > | > Hi all, | > | > As the test failures for complex valued variables appeared to be systemic on | > the 'mips64el' platform, I buckled down, taught myself some Python =

Bug#1050432: rpy2: FTBFS on mips64el

2023-08-26 Thread Dirk Eddelbuettel
Hi all, As the test failures for complex valued variables appeared to be systemic on the 'mips64el' platform, I buckled down, taught myself some Python ==:-) and conditioned the number of failing tests away via @pytest.mark.skipif(platform.machine() == 'mips64' and sys.byteorder == 'little',

Bug#1050432: rpy2: FTBFS on mips64el

2023-08-24 Thread Dirk Eddelbuettel
Paul, Thanks for the hint. I was aware and had been meaning to bring this up with Laurent (upstream, now CCed). Laurent: I should have access to a 'porterbox' running mips64el if you have an idea about what may be going on here / have a branch to test. Paul: While I have you here, and as all t

Bug#1049438: r-cran-rgdal: autopkgtest needs update for new version of r-cran-sp

2023-08-18 Thread Dirk Eddelbuettel
On 18 August 2023 at 13:58, Andreas Tille wrote: | Control: tags -1 upstream | Control: forwarded -1 Roger Bivand | | Hi Roger, | | the CI tests in Debian uncovered some conflict between recent rgdal and | version 2.0 of sp. As you either can see in the bug report that was | filed[1] or in a

Bug#1041556: What is the architecture name in R what we call armel/armhf

2023-08-17 Thread Dirk Eddelbuettel
On 17 August 2023 at 07:24, Graham Inggs wrote: | On Thu, 17 Aug 2023 at 05:52, Andreas Tille wrote: | > I tried to skip two tests in r-cran-checkmate with this patch[1] | > which is based on | > | > arch <- R.version$arch | > identical(arch, "i386") || identical(arch, "i686") || identical(a

Bug#1028111: r-cran-clock: autopkgtest failure on 32bit

2023-08-12 Thread Dirk Eddelbuettel
The 'bug fix' applied to the _previous_ version of CRAN package clock, namely a somewhat 'wild' sed patching of a single ie # Ignore single test for i386 architecture. This is a workaround for bug #1024828 of r-cran-igraph if [ "$hostarch" = "i386" -o "$hostarch" = "armel" -o "$hostarch" = "ar

Bug#1042889: vm breakage with Emacs 29

2023-08-02 Thread Dirk Eddelbuettel
On 2 August 2023 at 14:41, Ian Jackson wrote: | Dirk Eddelbuettel writes ("Re: vm breakage with Emacs 29"): | > On 2 August 2023 at 13:17, Ian Jackson wrote: | > | Hi. Since you were helpful with #1039105 "Fails to start with Emacs | > | 28" I thought I would dr

Bug#1038405: Bug#1037439: r-cran-rstan/armhf FTBFS with r-cran-bh 1.74

2023-08-01 Thread Dirk Eddelbuettel
On 31 July 2023 at 23:13, Adrian Bunk wrote: | On Mon, Jun 19, 2023 at 04:37:22PM +0300, Adrian Bunk wrote: | > On Tue, Jun 13, 2023 at 03:30:18PM -0500, Dirk Eddelbuettel wrote: | > > | > > On 13 June 2023 at 13:15, Steve Langasek wrote: | > > | Control: reassign -1 r

Bug#1042040: quantlib-swig: FTBFS: QuantLib/quantlib_wrap.cpp:9493:19: error: ‘LexicographicalView’ in namespace ‘QuantLib’ does not name a template type

2023-07-25 Thread Dirk Eddelbuettel
On 25 July 2023 at 23:05, Lucas Nussbaum wrote: | Source: quantlib-swig | Version: 1.30-2 | Severity: serious | Justification: FTBFS | Tags: trixie sid ftbfs | | Hi, | | During a rebuild of all packages in sid, your package failed to build | on amd64. I'll get on this -- it is lagging behind t

Bug#1041738: src:lme4: fails to migrate to testing for too long: causes timeout in autopkgtests on i386

2023-07-23 Thread Dirk Eddelbuettel
On 23 July 2023 at 11:03, Dirk Eddelbuettel wrote: | Note that the mlmRev authors / maintainers are the same as / a subset of the | lme4 authors. They may have an idea. | | https://cran.r-project.org/package=mlmRev I just ran `R CMD check mlmRev_*tar.gz` on my amd64 (under Ubuntu 23.04), it

Bug#1041738: src:lme4: fails to migrate to testing for too long: causes timeout in autopkgtests on i386

2023-07-23 Thread Dirk Eddelbuettel
On 23 July 2023 at 15:07, Graham Inggs wrote: | Hi | | On Sun, 23 Jul 2023 at 13:11, Nilesh Patra wrote: | > How do you conclude that? | > The versions of affected packages are same in unstable and testing. They | > fail in i386 with a newer version of lme4. | | For what it's worth, r-cran-afe

Bug#1041738: src:lme4: fails to migrate to testing for too long: causes timeout in autopkgtests on i386

2023-07-23 Thread Dirk Eddelbuettel
On 23 July 2023 at 18:42, Nilesh Patra wrote: | On Sun, 23 Jul 2023 07:15:09 -0500 Dirk Eddelbuettel wrote | > Is this is not an example of a release manager override? The affectect | > packages all work together in unstable and could migrate. | | How do you conclude that? | The versi

Bug#1041738: src:lme4: fails to migrate to testing for too long: causes timeout in autopkgtests on i386

2023-07-23 Thread Dirk Eddelbuettel
Paul, Is this is not an example of a release manager override? The affectect packages all work together in unstable and could migrate. Dirk -- dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org

Bug#1041738: src:lme4: fails to migrate to testing for too long: causes timeout in autopkgtests on i386

2023-07-22 Thread Dirk Eddelbuettel
On 22 July 2023 at 21:45, Paul Gevers wrote: | Source: lme4 | Version: 1.1-31-1 | Severity: serious | Control: close -1 1.1-34-1 | X-Debbugs-CC: debia...@lists.debian.org | Tags: sid trixie | User: release.debian@packages.debian.org | Usertags: out-of-sync | | Dear maintainer(s), | | The Re

Bug#1039721: r-base: 4.3 causes many autopkgtests to fail

2023-07-05 Thread Dirk Eddelbuettel
Control: severity -1 normal I am changing this back because a) there is no general bug in R 4.3.1, and there newer was there were a few packages requiring an update to the new graphics engine version (as the packages choose to call R_GE_checkVersionOrDie, it is coming from the

Bug#1039721: r-base: 4.3 causes many autopkgtests to fail

2023-06-29 Thread Dirk Eddelbuettel
On 28 June 2023 at 17:39, Jeremy Bícha wrote: | Control: severity -1 serious | | On Wed, Jun 28, 2023 at 5:29 PM Dirk Eddelbuettel wrote: | > Feel free to change the severity back if you truly think it is that serious. | | Done. | | Feel free to close the bug once r-base is ready to migr

Bug#1039721: r-base: 4.3 causes many autopkgtests to fail

2023-06-28 Thread Dirk Eddelbuettel
severity 1039721 normal thanks Hi Jeremy, That is a false positive (more below) and a duplicate of #1039510; the discussion of the latter now continues on the debian-r list. On 28 June 2023 at 12:31, Jeremy Bícha wrote: | Source: r-base | Version: 4.3.1-1 | Severity: serious | | I'm copying t

Bug#1039645: Seems we need a transition for r-base instead of lots of single bugs against single packages (Was: Bug#1039645: r-cran-epi: autopkgtest failure with r-base (4.3.1-1))

2023-06-28 Thread Dirk Eddelbuettel
On 28 June 2023 at 14:03, Andreas Tille wrote: | Am Wed, Jun 28, 2023 at 08:11:05AM +0200 schrieb Bas Couwenberg: | > 189s DLL requires the use of native symbols | | I wonder, whether all those bugs against single r-* packages are | sensible. Yes they are. Those are bugs in the packages ho

Bug#1039510: mvtnorm breaks r-cran-pammtools autopkgtest: missing Breaks and/or versioned (test) Depends?

2023-06-27 Thread Dirk Eddelbuettel
Hi Paul, On 27 June 2023 at 20:08, Paul Gevers wrote: | Hi Dirk, | | On 26-06-2023 22:21, Dirk Eddelbuettel wrote: | > I really appreciate the diligence and detail you put into this. | > | > But I would like to offer a simple shortcut. I am also CCing debian-r again | > as this

Bug#1039510: mvtnorm breaks r-cran-pammtools autopkgtest: missing Breaks and/or versioned (test) Depends?

2023-06-26 Thread Dirk Eddelbuettel
Hi Paul, I really appreciate the diligence and detail you put into this. But I would like to offer a simple shortcut. I am also CCing debian-r again as this has come up time and time again, is guaranteed to come up again for as long as combine autopkgtests with letting packages go stake. Poi

Bug#1034683: r-base: new upstream release unintentionally uploaded to unstable

2023-06-21 Thread Dirk Eddelbuettel
Hi Philip, On 21 June 2023 at 20:15, Philip Rinn wrote: | Hi, | | could we please close this bug? We released bookworm some days ago and | propagating to testing should be fine now. [It blocks R packages to propagate to | testing currently.] Thanks for the reminder. I think we had informal

Bug#1036071: fixed in gsl 2.7.1+dfsg-4

2023-06-02 Thread Dirk Eddelbuettel
On 2 June 2023 at 20:57, Paul Gevers wrote: | Hi Dirk, | | On 02-06-2023 20:38, Dirk Eddelbuettel wrote: | > | Are you sure? I just diffed the source to see if I should unblock and | > | got this: | > | > I would appear I did NOT add that one line to debian/control !! Doh !! | &g

Bug#1036071: fixed in gsl 2.7.1+dfsg-4

2023-06-02 Thread Dirk Eddelbuettel
: libgsl25' (with thanks to | +Andreas Beckmann for the suggestion) (Closes: #1036071) | + | + * debian/control: Set Standards-Version: to current version | + | + -- Dirk Eddelbuettel Sun, 14 May 2023 21:25:16 -0500 | + | gsl (2.7.1+dfsg-3) unstable; urgency=medium |

Bug#1035428: Test suite issues due to new upstream version of r-core in unstable (Was: r-cran-shiny: broken symlink: ...)

2023-05-16 Thread Dirk Eddelbuettel
On 16 May 2023 at 20:13, Nilesh Patra wrote: | Uh, no. Maybe you misunderstood my suggestion. The t-p-u way was for Indeed! | r-base can continue to stay where it already is at the moment :) Yep. Dirk -- dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org

Bug#1035428: Test suite issues due to new upstream version of r-core in unstable (Was: r-cran-shiny: broken symlink: ...)

2023-05-16 Thread Dirk Eddelbuettel
On 16 May 2023 at 19:49, Nilesh Patra wrote: | On Tue, May 16, 2023 at 07:25:15PM +0530, Nilesh Patra wrote: | > I personally prefer "1" over 2 as it is less noise (and effort). | | On second thoughts, I think sending it via testing-proposed-updates | would be a better thing to do, as this case

Bug#1035428: Test suite issues due to new upstream version of r-core in unstable (Was: r-cran-shiny: broken symlink: ...)

2023-05-16 Thread Dirk Eddelbuettel
d to some better | regular expression. Nice catch and suggestion! On 16 May 2023 at 19:27, Nilesh Patra wrote: | On Tue, May 16, 2023 at 08:26:21AM -0500, Dirk Eddelbuettel wrote: | > Note that none of this affects the release. My recommendation is temporarily | > suspend the autopkgtest in

Bug#1035428: Test suite issues due to new upstream version of r-core in unstable (Was: r-cran-shiny: broken symlink: ...)

2023-05-16 Thread Dirk Eddelbuettel
On 16 May 2023 at 15:01, Andreas Tille wrote: | Hi, | | when fixing bug #1035428 I realised test suite issues with | | r-cran-thematic [1] |-> Error in `svglite_(filename, bg, width, height, pointsize, standalone, | always_valid)`: Graphics API version mismatch | | r-cran-treesc

Bug#1036071: libgsl27: please add Breaks: libgsl25 for smoother opgrades from bullseye

2023-05-14 Thread Dirk Eddelbuettel
On 15 May 2023 at 03:15, Andreas Beckmann wrote: | On 15/05/2023 02.58, Dirk Eddelbuettel wrote: | > | Yes thank you -- that sounds sensible. And we would then nag the release | > | team to get this out in the release? | | yes | | > Oh, and to be extra plain: upload to unstable as a

Bug#1036071: libgsl27: please add Breaks: libgsl25 for smoother opgrades from bullseye

2023-05-14 Thread Dirk Eddelbuettel
On 14 May 2023 at 19:50, Dirk Eddelbuettel wrote: | | On 15 May 2023 at 02:21, Andreas Beckmann wrote: | | Package: libgsl27 | | Version: 2.7.1+dfsg-3 | | Severity: serious | | Tags: patch | | User: debian...@lists.debian.org | | Usertags: piuparts | | | | Hi, | | | | libgsl25 from bullseye

Bug#1036071: libgsl27: please add Breaks: libgsl25 for smoother opgrades from bullseye

2023-05-14 Thread Dirk Eddelbuettel
On 15 May 2023 at 02:21, Andreas Beckmann wrote: | Package: libgsl27 | Version: 2.7.1+dfsg-3 | Severity: serious | Tags: patch | User: debian...@lists.debian.org | Usertags: piuparts | | Hi, | | libgsl25 from bullseye and libgsl27 from bookworm are not co-installable | due to their strict depen

Bug#1034683: r-base: new upstream release unintentionally uploaded to unstable

2023-04-22 Thread Dirk Eddelbuettel
Hi Simon, Thanks for the long and thoughtful and detailed reply. Just 'sitting back' will do just fine then. R releases annually in April, the 4.2.* series was just fine. We had an usual event in that R Core upstream asked (a first in ~25 years) to patch 4.2.2, hence the somewhat unusual versi

Bug#1034683: r-base: new upstream release unintentionally uploaded to unstable

2023-04-21 Thread Dirk Eddelbuettel
On 21 April 2023 at 10:51, Dirk Eddelbuettel wrote: | | On 21 April 2023 at 16:23, Simon McVittie wrote: | | Source: r-base | | Version: 4.3.0-1 | | Severity: serious | | Justification: maintainer presumably considers this version to be unsuitable for bookworm | | | | > r-base (4.3.

Bug#1034683: r-base: new upstream release unintentionally uploaded to unstable

2023-04-21 Thread Dirk Eddelbuettel
On 21 April 2023 at 16:23, Simon McVittie wrote: | Source: r-base | Version: 4.3.0-1 | Severity: serious | Justification: maintainer presumably considers this version to be unsuitable for bookworm | | > r-base (4.3.0-1) unstable; urgency=medium | > . | > * New upstream release (into 'experime

Bug#1032120: Upload of new upstream version before fix has migrated to testing (Was: Re: Bug#1032120: tiledb: uses atomic operations, but is not linked to libatomic)

2023-03-12 Thread Dirk Eddelbuettel
Why not wait a week on 2.15.0-1 which now 'Too young, only 4 of 10 days old'? Dirk -- dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org

Bug#1032120: tiledb: uses atomic operations, but is not linked to libatomic

2023-02-28 Thread Dirk Eddelbuettel
Hi Graham, On 28 February 2023 at 19:36, Graham Inggs wrote: | Hi Dirk | | Thanks for the quick upload! | Already got a successful build of tiledb-py on riscv64[1]. | | On Tue, 28 Feb 2023 at 17:14, Dirk Eddelbuettel wrote: | > TileDB upstream does everything in CMake (which I do not fu

Bug#1032120: tiledb: uses atomic operations, but is not linked to libatomic

2023-02-28 Thread Dirk Eddelbuettel
(Whoops typed this hours ago but apparently did not send from Emacs. --D.) Hi Graham, On 28 February 2023 at 10:49, Graham Inggs wrote: | Source: tiledb | Version: 2.14.1-1 | Severity: serious | Tags: ftbfs patch | Control: affects -1 src:tiledb-py | | Hi Dirk | | TileDB uses atomic operation

Bug#1029917: r-cran-pbkrtest: Depends: r-cran-lme4 (>= 1.1.31) but it is not going to be installed

2023-01-28 Thread Dirk Eddelbuettel
On 29 January 2023 at 01:58, Adrian Bunk wrote: | Package: r-cran-pbkrtest | Version: 0.5.2-1 | Severity: serious | | The following packages have unmet dependencies: | r-cran-pbkrtest : Depends: r-cran-lme4 (>= 1.1.31) but it is not going to be installed | | You might want to reconsider | |

Bug#1025835: tiledb-py: build-depends on libtiledb-doc

2022-12-10 Thread Dirk Eddelbuettel
On 10 December 2022 at 22:38, Nilesh Patra wrote: | On Sat, Dec 10, 2022 at 07:56:52AM -0600, Dirk Eddelbuettel wrote: | > | > On 10 December 2022 at 09:07, Peter Green wrote: | > | Source: tiledb-py | > | Version: 0.18.2-1 | > | Severity: serious | > | Justification: rc polic

Bug#1025835: tiledb-py: build-depends on libtiledb-doc

2022-12-10 Thread Dirk Eddelbuettel
On 10 December 2022 at 09:07, Peter Green wrote: | Source: tiledb-py | Version: 0.18.2-1 | Severity: serious | Justification: rc policy - "Packages must be buildable within the same release" | x-debbugs-cc: e...@debian.org | User: debian...@lists.debian.org | Usertags: edos-uninstallable | | ti

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