Bug#815176: staden: Gap4 contig editor does not show sequences

2016-02-23 Thread Kerstin Hoef-Emden
stall went through. All operations worked: Converting the files with pregap and opening of contig editor and of the trace files in gap4! Thanks a lot! You may install the backport ... Best wishes, Kerstin -- PD Dr. Kerstin Hoef-Emden Zülpicher Str. 47b Universit

Bug#815176: staden: Gap4 contig editor does not show sequences

2016-02-23 Thread Kerstin Hoef-Emden
5 Euston Road, London, NW1 2BE. ___ Debian-med-packaging mailing list debian-med-packag...@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-packaging -- PD Dr. Kerstin Hoef-Emden Zülpiche

Bug#815176: staden: Gap4 contig editor does not show sequences

2016-02-22 Thread Kerstin Hoef-Emden
/lib/staden/bin/pregap4 What happens if you do this? Did not work (I am surprised - this is the path containing all modules). Best wishes, Kerstin -- PD Dr. Kerstin Hoef-Emden Zülpicher Str. 47b Universität zu Köln 50674 Köln Biozentrum Köln

Bug#815176: staden: Gap4 contig editor does not show sequences

2016-02-22 Thread Kerstin Hoef-Emden
org/viewvc/debian-med/trunk/packages/staden/trunk/debian/patches/cope_with_modern_windowmanager.patch?revision=21446=markup [2] https://anonscm.debian.org/viewvc/debian-med/trunk/packages/staden/trunk/debian/patches/ -- PD Dr. Kerstin Hoef-Emden Zülpicher Str. 47b Universit

Bug#815176: staden: Gap4 contig editor does not show sequences

2016-02-20 Thread Kerstin Hoef-Emden
Tk version than > you might have used before. I checked it on my computer at home, which is a 64-bit machine: same problem. Best wishes, Kerstin > > On Fri, Feb 19, 2016 at 06:56:36PM +0100, Kerstin Hoef-Emden wrote: >> Package: staden >> Version: 2.0.0+b10-1.1 >>

Bug#815176: staden: Gap4 contig editor does not show sequences

2016-02-19 Thread Kerstin Hoef-Emden
Package: staden Version: 2.0.0+b10-1.1 Severity: grave Justification: renders package unusable Dear Maintainer, I loaded pregap-converted *.exp sequences into gap4 to do an assembly. The assembly worked out, but I cannot open the contig editor for proofreading. More correctly described: It

Bug#815174: staden: Missing links in /usr/bin

2016-02-19 Thread Kerstin Hoef-Emden
Package: staden Version: 2.0.0+b10-1.1 Severity: grave Justification: renders package unusable Dear Maintainer, I tried to convert *.ab1 files to *.exp files with pregap4, which failed with an error message that eba could not be found. I copied an eba from the sourceforge download bay into