Your message dated Mon, 05 Oct 2009 13:47:12 +0000
with message-id <e1munuc-0001ms...@ries.debian.org>
and subject line Bug#549637: fixed in libqsearch 1.0.8-3
has caused the Debian Bug report #549637,
regarding libqsearch1-headers and libqsearch-gomp-dev: error when trying to
install together
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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immediately.)
--
549637: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=549637
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: libqsearch-gomp-dev,libqsearch1-headers
Version: libqsearch-gomp-dev/1.0.8-2
Version: libqsearch1-headers/1.0.8-2
Severity: serious
User: trei...@debian.org
Usertags: edos-file-overwrite
Date: 2009-10-05
Architecture: amd64
Distribution: sid
Hi,
automatic installation tests of packages that share a file and at the
same time do not conflict by their package dependency relationships has
detected the following problem:
WARNING: The following packages cannot be authenticated!
libpcre3 libxml2 libglib2.0-0 libgsl0ldbl libcomplearn1 pkg-config
libglib2.0-dev libgomp1 libgsl0-dev libqsearch-gomp1 libxml2-dev
libqsearch1-headers libqsearch-gomp-dev
Authentication warning overridden.
Can not write log, openpty() failed (/dev/pts not mounted?)
Selecting previously deselected package libpcre3.
(Reading database ... 10249 files and directories currently installed.)
Unpacking libpcre3 (from .../libpcre3_7.8-2_amd64.deb) ...
Selecting previously deselected package libxml2.
Unpacking libxml2 (from .../libxml2_2.7.5.dfsg-1_amd64.deb) ...
Selecting previously deselected package libglib2.0-0.
Unpacking libglib2.0-0 (from .../libglib2.0-0_2.22.1-1_amd64.deb) ...
Selecting previously deselected package libgsl0ldbl.
Unpacking libgsl0ldbl (from .../libgsl0ldbl_1.13+dfsg-1_amd64.deb) ...
Selecting previously deselected package libcomplearn1.
Unpacking libcomplearn1 (from .../libcomplearn1_1.1.5-1_amd64.deb) ...
Selecting previously deselected package pkg-config.
Unpacking pkg-config (from .../pkg-config_0.22-1_amd64.deb) ...
Selecting previously deselected package libglib2.0-dev.
Unpacking libglib2.0-dev (from .../libglib2.0-dev_2.22.1-1_amd64.deb) ...
Selecting previously deselected package libgomp1.
Unpacking libgomp1 (from .../libgomp1_4.4.1-5_amd64.deb) ...
Selecting previously deselected package libgsl0-dev.
Unpacking libgsl0-dev (from .../libgsl0-dev_1.13+dfsg-1_amd64.deb) ...
Selecting previously deselected package libqsearch-gomp1.
Unpacking libqsearch-gomp1 (from .../libqsearch-gomp1_1.0.8-2_amd64.deb) ...
Selecting previously deselected package libxml2-dev.
Unpacking libxml2-dev (from .../libxml2-dev_2.7.5.dfsg-1_amd64.deb) ...
Selecting previously deselected package libqsearch1-headers.
Unpacking libqsearch1-headers (from .../libqsearch1-headers_1.0.8-2_all.deb) ...
Selecting previously deselected package libqsearch-gomp-dev.
Unpacking libqsearch-gomp-dev (from .../libqsearch-gomp-dev_1.0.8-2_amd64.deb)
...
dpkg: error processing
/var/cache/apt/archives/libqsearch-gomp-dev_1.0.8-2_amd64.deb (--unpack):
trying to overwrite '/usr/include/qsearch-1.0/qsearch/qsearch-maketree.h',
which is also in package libqsearch1-headers 0:1.0.8-2
Processing triggers for man-db ...
Errors were encountered while processing:
/var/cache/apt/archives/libqsearch-gomp-dev_1.0.8-2_amd64.deb
E: Sub-process /usr/bin/dpkg returned an error code (1)
This is a serious bug as it makes installation fail. Possible
solutions are to have the two packages conflict, to rename the common
file in one of the two packages, or to remove the file from one
package and have this package depend on the other package. File
diversions or a Replace relation are another possibility.
Here is a list of files that are known to be shared by both packages
(according to the Contents file for sid/amd64, which may be
slightly out of sync):
usr/include/qsearch-1.0/qsearch.h
usr/include/qsearch-1.0/qsearch/clconfig.h
usr/include/qsearch-1.0/qsearch/qsearch-fulltree.h
usr/include/qsearch-1.0/qsearch/qsearch-maketree-private.h
usr/include/qsearch-1.0/qsearch/qsearch-maketree.h
usr/include/qsearch-1.0/qsearch/qsearch-neighborlist.h
usr/include/qsearch-1.0/qsearch/qsearch-tree.h
usr/include/qsearch-1.0/qsearch/qsearch-treemaster.h
usr/include/qsearch-1.0/qsearch/qsearch.h
This bug is assigned to both packages. If you, the maintainers of
the two packages in question, have agreed on which of the packages will
resolve the problem please reassign the bug to that package.
-Ralf.
--- End Message ---
--- Begin Message ---
Source: libqsearch
Source-Version: 1.0.8-3
We believe that the bug you reported is fixed in the latest version of
libqsearch, which is due to be installed in the Debian FTP archive:
libqsearch-dev_1.0.8-3_i386.deb
to pool/main/libq/libqsearch/libqsearch-dev_1.0.8-3_i386.deb
libqsearch-gomp-dev_1.0.8-3_i386.deb
to pool/main/libq/libqsearch/libqsearch-gomp-dev_1.0.8-3_i386.deb
libqsearch-gomp1_1.0.8-3_i386.deb
to pool/main/libq/libqsearch/libqsearch-gomp1_1.0.8-3_i386.deb
libqsearch1-headers_1.0.8-3_all.deb
to pool/main/libq/libqsearch/libqsearch1-headers_1.0.8-3_all.deb
libqsearch1_1.0.8-3_i386.deb
to pool/main/libq/libqsearch/libqsearch1_1.0.8-3_i386.deb
libqsearch_1.0.8-3.diff.gz
to pool/main/libq/libqsearch/libqsearch_1.0.8-3.diff.gz
libqsearch_1.0.8-3.dsc
to pool/main/libq/libqsearch/libqsearch_1.0.8-3.dsc
qsearch-tools_1.0.8-3_i386.deb
to pool/main/libq/libqsearch/qsearch-tools_1.0.8-3_i386.deb
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 549...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated libqsearch package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Mon, 05 Oct 2009 13:22:51 +0200
Source: libqsearch
Binary: libqsearch-gomp-dev libqsearch1-headers libqsearch-dev libqsearch-gomp1
libqsearch1 qsearch-tools
Architecture: source i386 all
Version: 1.0.8-3
Distribution: unstable
Urgency: low
Maintainer: Debian Science Maintainers
<debian-science-maintain...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
libqsearch-dev - nondeterministic quartet tree search library for unrooted
trees
libqsearch-gomp-dev - CompLearn library, OpenMP version development files
libqsearch-gomp1 - machine-learning core library runtime files with OpenMP
(libgomp)
libqsearch1 - quartet tree search library for hierarchical clustering
libqsearch1-headers - machine-learning through data compression header files
qsearch-tools - qsearch machine-learning command-line utilities
Closes: 549637
Changes:
libqsearch (1.0.8-3) unstable; urgency=low
.
* Do not put headers into libqsearch-gomp-dev package
Closes: #549637
* Turn libqsearch1-headers (= ${source:Version}) into
libqsearch1-headers (= ${binary:Version}) to be safe
and trade of between lintian error weak-library-dev-dependency
against not-binnmuable-any-depends-all. IMHO it is more important
to be sure that package versions fit correctly than enabling
binnmus. I did not (yet) created a lintian override to not
hide this issue
Checksums-Sha1:
4574fda06a649d6d1a3b43501814569ffda0d5a4 1556 libqsearch_1.0.8-3.dsc
0f9b51057a25a6d733a53e2cd66252eeadacebe6 5154 libqsearch_1.0.8-3.diff.gz
a90b9da05810e7a9c6cb2c30ff4472a7439ea819 29840
libqsearch-gomp-dev_1.0.8-3_i386.deb
5ea7449df0f929652f3c8d9894bfb30e5213289d 7540
libqsearch1-headers_1.0.8-3_all.deb
cf7ea2b76b8b2c5d89393bf15b413c5c29b9cabc 32826 libqsearch-dev_1.0.8-3_i386.deb
d2998dc70e4ba01b798bf778aad3886d83c52605 30506
libqsearch-gomp1_1.0.8-3_i386.deb
80014bceb95e80389b1c8279ea059fb1a4ead0df 33006 libqsearch1_1.0.8-3_i386.deb
f48f78e302906a8e4846cf9d12eb50d6ce8185fb 7886 qsearch-tools_1.0.8-3_i386.deb
Checksums-Sha256:
cb7c0f8639e254fbac9c1372eb9edf3f7039379134847762df9cbe5a720519c7 1556
libqsearch_1.0.8-3.dsc
0d5e00e95ad19a33c6765e210ee519fe1f69e3380ac4223cc7c8566e465a2ef9 5154
libqsearch_1.0.8-3.diff.gz
bcdb15359fac947a36b042e6a11dcdbdeaeca7e792fbbc4003d23dc4911b879b 29840
libqsearch-gomp-dev_1.0.8-3_i386.deb
9f440b16a378b82e1495465cd35343e9370af8f73ea5d9294f4ac6f40c24842e 7540
libqsearch1-headers_1.0.8-3_all.deb
0a9003ce07457738035452bae34a44d1e354eb6ee24b9266b7ff5bcfeca97235 32826
libqsearch-dev_1.0.8-3_i386.deb
14ed8148e176d0ab4195959cc1b8e1031d854b994ef979e1bca1d06802aeae97 30506
libqsearch-gomp1_1.0.8-3_i386.deb
4bb11afeaccd4c2340f4512df333e1e988a1427d7b9834665bb0046825ed74dc 33006
libqsearch1_1.0.8-3_i386.deb
7d04a3deb6a294ebe9796bab836b561a167e7db073d3ac6c96fead317bc73adc 7886
qsearch-tools_1.0.8-3_i386.deb
Files:
b9aeb89990e9d86a9073d565f80179c9 1556 libs optional libqsearch_1.0.8-3.dsc
7496ea3ce7927bc5d4351699e56ac5fc 5154 libs optional libqsearch_1.0.8-3.diff.gz
e41bf69873cd2b9a454860389191a585 29840 libdevel optional
libqsearch-gomp-dev_1.0.8-3_i386.deb
324dd7980da4a0c95b7c26ede69c746b 7540 libdevel optional
libqsearch1-headers_1.0.8-3_all.deb
42616a292cf8d37ef3345db0900387e7 32826 libdevel optional
libqsearch-dev_1.0.8-3_i386.deb
16942395e1673dd7fd545494f1ddc60a 30506 libs optional
libqsearch-gomp1_1.0.8-3_i386.deb
3b932c6bc7868f048bd3855b5eddfaaf 33006 libs optional
libqsearch1_1.0.8-3_i386.deb
6aa4fb50a60f199bd0a825b212ddb3f1 7886 science optional
qsearch-tools_1.0.8-3_i386.deb
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--- End Message ---
