Your message dated Thu, 22 Oct 2009 19:31:27 +0000
with message-id <e1n13nf-0001hv...@ries.debian.org>
and subject line Bug#551244: fixed in avogadro 0.9.9-1
has caused the Debian Bug report #551244,
regarding avogadro: FTBFS: sip.cpp:142: error: 'const struct sipAPIDef' has no
member named 'api_convert_from_instance'
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
551244: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=551244
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: avogadro
Version: 0.9.7-1
Severity: serious
User: debian...@lists.debian.org
Usertags: qa-ftbfs-20091016 qa-ftbfs
Justification: FTBFS on amd64
Hi,
During a rebuild of all packages in sid, your package failed to build on
amd64.
Relevant part:
> /usr/bin/g++ -fPIC -g -O2 -g -Wall -O2 -fvisibility=hidden
> -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT
> -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings
> -Wl,--no-undefined -lc -Wl,-z,defs -Wl,--as-needed -shared
> -Wl,-soname,residuecolor.so -o ../../../lib/residuecolor.so
> CMakeFiles/residuecolor.dir/residuecolor.cpp.o
> CMakeFiles/residuecolor.dir/moc_residuecolor.cxx.o -L/usr/lib/libGLEW.so
> -L/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/colors/..
> ../../../lib/libavogadro.so.0.9.7 -lopenbabel -lQtOpenGL -lGLU -lGL -lQtGui
> -lX11 -lm -lQtNetwork -lQtCore -lpthread -ldl -lGLU -lGL -lX11 -lm
> -lQtNetwork -lQtCore -lpthread -ldl -lGLU -lGL -lGLEW -lpython2.5
> -lboost_python
> make[3]: Leaving directory
> `/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu'
> /usr/bin/cmake -E cmake_progress_report
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/CMakeFiles
>
> [ 76%] Built target residuecolor
> /usr/bin/make -f
> libavogadro/src/python/CMakeFiles/python-module.dir/build.make
> libavogadro/src/python/CMakeFiles/python-module.dir/depend
> make[3]: Entering directory
> `/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu'
> /usr/bin/cmake -E cmake_progress_report
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/CMakeFiles
>
> [ 76%] Generating moleculelist.moc
> cd
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python
> && /usr/bin/moc-qt4
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/include
> -I/usr/include/qt4 -I/usr/include/qt4/QtOpenGL -I/usr/include/qt4/QtGui
> -I/usr/include/qt4/QtNetwork -I/usr/include/qt4/QtCore
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src
> -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include
> -I/usr/include/python2.5
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/include
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python
> -I/usr/lib/python2.5/site-packages/numpy/core/include -D_BSD_SOURCE
> -DHAVE_GCC_VISIBILITY -DENABLE_PYTHON -DENABLE_GLSL -DQT_DLL -DQT_OPENGL_LIB
> -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -o
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python/moleculelist.moc
>
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/src/python/moleculelist.h
> cd
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu
> && /usr/bin/cmake -E cmake_depends "Unix Makefiles"
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/src/python
>
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python
>
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python/CMakeFiles/python-module.dir/DependInfo.cmake
> --color=
> Scanning dependencies of target python-module
> make[3]: Leaving directory
> `/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu'
> /usr/bin/make -f
> libavogadro/src/python/CMakeFiles/python-module.dir/build.make
> libavogadro/src/python/CMakeFiles/python-module.dir/build
> make[3]: Entering directory
> `/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu'
> /usr/bin/cmake -E cmake_progress_report
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/CMakeFiles
>
> [ 76%] Building CXX object
> libavogadro/src/python/CMakeFiles/python-module.dir/engine.cpp.o
> cd
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python
> && /usr/bin/g++ -Dpython_module_EXPORTS -D_BSD_SOURCE
> -DHAVE_GCC_VISIBILITY -DENABLE_PYTHON -DENABLE_GLSL -DQT_DLL -DQT_OPENGL_LIB
> -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_NO_DEBUG -g -O2 -g -Wall -O2
> -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG
> -DQT_NO_DEBUG_OUTPUT -fPIC
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/include
> -I/usr/include/qt4 -I/usr/include/qt4/QtOpenGL -I/usr/include/qt4/QtGui
> -I/usr/include/qt4/QtNetwork -I/usr/include/qt4/QtCore
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src
> -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.5
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/include
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python
> -I/usr/lib/python2.5/site-packages/numpy/core/include -o
> CMakeFiles/python-module.dir/engine.cpp.o -c
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/src/python/engine.cpp
> /usr/bin/cmake -E cmake_progress_report
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/CMakeFiles
> 77
> [ 77%] Building CXX object
> libavogadro/src/python/CMakeFiles/python-module.dir/plugin.cpp.o
> cd
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python
> && /usr/bin/g++ -Dpython_module_EXPORTS -D_BSD_SOURCE
> -DHAVE_GCC_VISIBILITY -DENABLE_PYTHON -DENABLE_GLSL -DQT_DLL -DQT_OPENGL_LIB
> -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_NO_DEBUG -g -O2 -g -Wall -O2
> -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG
> -DQT_NO_DEBUG_OUTPUT -fPIC
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/include
> -I/usr/include/qt4 -I/usr/include/qt4/QtOpenGL -I/usr/include/qt4/QtGui
> -I/usr/include/qt4/QtNetwork -I/usr/include/qt4/QtCore
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src
> -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.5
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/include
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python
> -I/usr/lib/python2.5/site-packages/numpy/core/include -o
> CMakeFiles/python-module.dir/plugin.cpp.o -c
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/src/python/plugin.cpp
> /usr/bin/cmake -E cmake_progress_report
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/CMakeFiles
>
> [ 77%] Building CXX object
> libavogadro/src/python/CMakeFiles/python-module.dir/std_vector.cpp.o
> cd
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python
> && /usr/bin/g++ -Dpython_module_EXPORTS -D_BSD_SOURCE
> -DHAVE_GCC_VISIBILITY -DENABLE_PYTHON -DENABLE_GLSL -DQT_DLL -DQT_OPENGL_LIB
> -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_NO_DEBUG -g -O2 -g -Wall -O2
> -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG
> -DQT_NO_DEBUG_OUTPUT -fPIC
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/include
> -I/usr/include/qt4 -I/usr/include/qt4/QtOpenGL -I/usr/include/qt4/QtGui
> -I/usr/include/qt4/QtNetwork -I/usr/include/qt4/QtCore
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src
> -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.5
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/include
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python
> -I/usr/lib/python2.5/site-packages/numpy/core/include -o
> CMakeFiles/python-module.dir/std_vector.cpp.o -c
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/src/python/std_vector.cpp
> /usr/bin/cmake -E cmake_progress_report
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/CMakeFiles
>
> [ 77%] Building CXX object
> libavogadro/src/python/CMakeFiles/python-module.dir/primitive.cpp.o
> cd
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python
> && /usr/bin/g++ -Dpython_module_EXPORTS -D_BSD_SOURCE
> -DHAVE_GCC_VISIBILITY -DENABLE_PYTHON -DENABLE_GLSL -DQT_DLL -DQT_OPENGL_LIB
> -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_NO_DEBUG -g -O2 -g -Wall -O2
> -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG
> -DQT_NO_DEBUG_OUTPUT -fPIC
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/include
> -I/usr/include/qt4 -I/usr/include/qt4/QtOpenGL -I/usr/include/qt4/QtGui
> -I/usr/include/qt4/QtNetwork -I/usr/include/qt4/QtCore
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src
> -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.5
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/include
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python
> -I/usr/lib/python2.5/site-packages/numpy/core/include -o
> CMakeFiles/python-module.dir/primitive.cpp.o -c
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/src/python/primitive.cpp
> /usr/bin/cmake -E cmake_progress_report
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/CMakeFiles
>
> [ 77%] Building CXX object
> libavogadro/src/python/CMakeFiles/python-module.dir/painter.cpp.o
> cd
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python
> && /usr/bin/g++ -Dpython_module_EXPORTS -D_BSD_SOURCE
> -DHAVE_GCC_VISIBILITY -DENABLE_PYTHON -DENABLE_GLSL -DQT_DLL -DQT_OPENGL_LIB
> -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_NO_DEBUG -g -O2 -g -Wall -O2
> -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG
> -DQT_NO_DEBUG_OUTPUT -fPIC
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/include
> -I/usr/include/qt4 -I/usr/include/qt4/QtOpenGL -I/usr/include/qt4/QtGui
> -I/usr/include/qt4/QtNetwork -I/usr/include/qt4/QtCore
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src
> -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.5
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/include
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python
> -I/usr/lib/python2.5/site-packages/numpy/core/include -o
> CMakeFiles/python-module.dir/painter.cpp.o -c
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/src/python/painter.cpp
> /usr/bin/cmake -E cmake_progress_report
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/CMakeFiles
>
> [ 77%] Building CXX object
> libavogadro/src/python/CMakeFiles/python-module.dir/bond.cpp.o
> cd
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python
> && /usr/bin/g++ -Dpython_module_EXPORTS -D_BSD_SOURCE
> -DHAVE_GCC_VISIBILITY -DENABLE_PYTHON -DENABLE_GLSL -DQT_DLL -DQT_OPENGL_LIB
> -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_NO_DEBUG -g -O2 -g -Wall -O2
> -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG
> -DQT_NO_DEBUG_OUTPUT -fPIC
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/include
> -I/usr/include/qt4 -I/usr/include/qt4/QtOpenGL -I/usr/include/qt4/QtGui
> -I/usr/include/qt4/QtNetwork -I/usr/include/qt4/QtCore
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src
> -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.5
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/include
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python
> -I/usr/lib/python2.5/site-packages/numpy/core/include -o
> CMakeFiles/python-module.dir/bond.cpp.o -c
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/src/python/bond.cpp
> /usr/bin/cmake -E cmake_progress_report
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/CMakeFiles
>
> [ 77%] Building CXX object
> libavogadro/src/python/CMakeFiles/python-module.dir/painterdevice.cpp.o
> cd
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python
> && /usr/bin/g++ -Dpython_module_EXPORTS -D_BSD_SOURCE
> -DHAVE_GCC_VISIBILITY -DENABLE_PYTHON -DENABLE_GLSL -DQT_DLL -DQT_OPENGL_LIB
> -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_NO_DEBUG -g -O2 -g -Wall -O2
> -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG
> -DQT_NO_DEBUG_OUTPUT -fPIC
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/include
> -I/usr/include/qt4 -I/usr/include/qt4/QtOpenGL -I/usr/include/qt4/QtGui
> -I/usr/include/qt4/QtNetwork -I/usr/include/qt4/QtCore
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src
> -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.5
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/include
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python
> -I/usr/lib/python2.5/site-packages/numpy/core/include -o
> CMakeFiles/python-module.dir/painterdevice.cpp.o -c
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/src/python/painterdevice.cpp
> /usr/bin/cmake -E cmake_progress_report
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/CMakeFiles
> 78
> [ 78%] Building CXX object
> libavogadro/src/python/CMakeFiles/python-module.dir/meshgenerator.cpp.o
> cd
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python
> && /usr/bin/g++ -Dpython_module_EXPORTS -D_BSD_SOURCE
> -DHAVE_GCC_VISIBILITY -DENABLE_PYTHON -DENABLE_GLSL -DQT_DLL -DQT_OPENGL_LIB
> -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_NO_DEBUG -g -O2 -g -Wall -O2
> -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG
> -DQT_NO_DEBUG_OUTPUT -fPIC
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/include
> -I/usr/include/qt4 -I/usr/include/qt4/QtOpenGL -I/usr/include/qt4/QtGui
> -I/usr/include/qt4/QtNetwork -I/usr/include/qt4/QtCore
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src
> -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.5
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/include
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python
> -I/usr/lib/python2.5/site-packages/numpy/core/include -o
> CMakeFiles/python-module.dir/meshgenerator.cpp.o -c
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/src/python/meshgenerator.cpp
> /usr/bin/cmake -E cmake_progress_report
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/CMakeFiles
>
> [ 78%] Building CXX object
> libavogadro/src/python/CMakeFiles/python-module.dir/navigate.cpp.o
> cd
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python
> && /usr/bin/g++ -Dpython_module_EXPORTS -D_BSD_SOURCE
> -DHAVE_GCC_VISIBILITY -DENABLE_PYTHON -DENABLE_GLSL -DQT_DLL -DQT_OPENGL_LIB
> -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_NO_DEBUG -g -O2 -g -Wall -O2
> -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG
> -DQT_NO_DEBUG_OUTPUT -fPIC
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/include
> -I/usr/include/qt4 -I/usr/include/qt4/QtOpenGL -I/usr/include/qt4/QtGui
> -I/usr/include/qt4/QtNetwork -I/usr/include/qt4/QtCore
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src
> -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.5
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/include
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python
> -I/usr/lib/python2.5/site-packages/numpy/core/include -o
> CMakeFiles/python-module.dir/navigate.cpp.o -c
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/src/python/navigate.cpp
> /usr/bin/cmake -E cmake_progress_report
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/CMakeFiles
>
> [ 78%] Building CXX object
> libavogadro/src/python/CMakeFiles/python-module.dir/glwidget.cpp.o
> cd
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python
> && /usr/bin/g++ -Dpython_module_EXPORTS -D_BSD_SOURCE
> -DHAVE_GCC_VISIBILITY -DENABLE_PYTHON -DENABLE_GLSL -DQT_DLL -DQT_OPENGL_LIB
> -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_NO_DEBUG -g -O2 -g -Wall -O2
> -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG
> -DQT_NO_DEBUG_OUTPUT -fPIC
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/include
> -I/usr/include/qt4 -I/usr/include/qt4/QtOpenGL -I/usr/include/qt4/QtGui
> -I/usr/include/qt4/QtNetwork -I/usr/include/qt4/QtCore
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src
> -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.5
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/include
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python
> -I/usr/lib/python2.5/site-packages/numpy/core/include -o
> CMakeFiles/python-module.dir/glwidget.cpp.o -c
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/src/python/glwidget.cpp
> /usr/bin/cmake -E cmake_progress_report
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/CMakeFiles
>
> [ 78%] Building CXX object
> libavogadro/src/python/CMakeFiles/python-module.dir/swig.cpp.o
> cd
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python
> && /usr/bin/g++ -Dpython_module_EXPORTS -D_BSD_SOURCE
> -DHAVE_GCC_VISIBILITY -DENABLE_PYTHON -DENABLE_GLSL -DQT_DLL -DQT_OPENGL_LIB
> -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_NO_DEBUG -g -O2 -g -Wall -O2
> -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG
> -DQT_NO_DEBUG_OUTPUT -fPIC
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/include
> -I/usr/include/qt4 -I/usr/include/qt4/QtOpenGL -I/usr/include/qt4/QtGui
> -I/usr/include/qt4/QtNetwork -I/usr/include/qt4/QtCore
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src
> -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.5
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/include
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python
> -I/usr/lib/python2.5/site-packages/numpy/core/include -o
> CMakeFiles/python-module.dir/swig.cpp.o -c
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/src/python/swig.cpp
> /usr/bin/cmake -E cmake_progress_report
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/CMakeFiles
>
> [ 78%] Building CXX object
> libavogadro/src/python/CMakeFiles/python-module.dir/color.cpp.o
> cd
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python
> && /usr/bin/g++ -Dpython_module_EXPORTS -D_BSD_SOURCE
> -DHAVE_GCC_VISIBILITY -DENABLE_PYTHON -DENABLE_GLSL -DQT_DLL -DQT_OPENGL_LIB
> -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_NO_DEBUG -g -O2 -g -Wall -O2
> -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG
> -DQT_NO_DEBUG_OUTPUT -fPIC
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/include
> -I/usr/include/qt4 -I/usr/include/qt4/QtOpenGL -I/usr/include/qt4/QtGui
> -I/usr/include/qt4/QtNetwork -I/usr/include/qt4/QtCore
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src
> -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.5
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/include
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python
> -I/usr/lib/python2.5/site-packages/numpy/core/include -o
> CMakeFiles/python-module.dir/color.cpp.o -c
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/src/python/color.cpp
> /usr/bin/cmake -E cmake_progress_report
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/CMakeFiles
>
> [ 78%] Building CXX object
> libavogadro/src/python/CMakeFiles/python-module.dir/sip.cpp.o
> cd
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python
> && /usr/bin/g++ -Dpython_module_EXPORTS -D_BSD_SOURCE
> -DHAVE_GCC_VISIBILITY -DENABLE_PYTHON -DENABLE_GLSL -DQT_DLL -DQT_OPENGL_LIB
> -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_NO_DEBUG -g -O2 -g -Wall -O2
> -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG
> -DQT_NO_DEBUG_OUTPUT -fPIC
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/include
> -I/usr/include/qt4 -I/usr/include/qt4/QtOpenGL -I/usr/include/qt4/QtGui
> -I/usr/include/qt4/QtNetwork -I/usr/include/qt4/QtCore
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src
> -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.5
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/include
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7
> -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python
> -I/usr/lib/python2.5/site-packages/numpy/core/include -o
> CMakeFiles/python-module.dir/sip.cpp.o -c
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/src/python/sip.cpp
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/src/python/sip.cpp:
> In static member function 'static PyObject*
> QClass_converters<T>::QClass_to_PyQt::convert(const T&)':
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/src/python/sip.cpp:142:
> error: 'const struct sipAPIDef' has no member named
> 'api_convert_from_instance'
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/src/python/sip.cpp:
> In static member function 'static PyObject*
> QClass_converters<T>::QClass_to_PyQt::convert(T*)':
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/src/python/sip.cpp:166:
> error: 'const struct sipAPIDef' has no member named
> 'api_convert_from_instance'
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/src/python/sip.cpp:
> In static member function 'static void*
> QClass_converters<T>::QClass_from_PyQt(PyObject*)':
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/src/python/sip.cpp:186:
> error: 'const struct sipAPIDef' has no member named 'api_wrapper_check'
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/src/python/sip.cpp:194:
> error: 'const struct sipAPIDef' has no member named 'api_transfer'
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/src/python/sip.cpp:204:
> error: 'struct sipWrapper' has no member named 'u'
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/src/python/sip.cpp:
> In static member function 'static PyObject*
> QList_QAction_to_python_list_PyQt::convert(const QList<QAction*>&)':
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/src/python/sip.cpp:244:
> error: 'const struct _sipAPIDef' has no member named
> 'api_convert_from_instance'
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/src/python/sip.cpp:
> In function 'PyObject* toPyQt(T*)':
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/src/python/sip.cpp:378:
> error: 'const struct sipAPIDef' has no member named
> 'api_convert_from_instance'
> make[3]: *** [libavogadro/src/python/CMakeFiles/python-module.dir/sip.cpp.o]
> Error 1
The full build log is available from:
http://people.debian.org/~lucas/logs/2009/10/16/avogadro_0.9.7-1_lsid64.buildlog
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on about 50 AMD64 nodes
of the Grid'5000 platform, using a clean chroot. Internet was not
accessible from the build systems.
--
| Lucas Nussbaum
| lu...@lucas-nussbaum.net http://www.lucas-nussbaum.net/ |
| jabber: lu...@nussbaum.fr GPG: 1024D/023B3F4F |
--- End Message ---
--- Begin Message ---
Source: avogadro
Source-Version: 0.9.9-1
We believe that the bug you reported is fixed in the latest version of
avogadro, which is due to be installed in the Debian FTP archive:
avogadro_0.9.9-1.diff.gz
to pool/main/a/avogadro/avogadro_0.9.9-1.diff.gz
avogadro_0.9.9-1.dsc
to pool/main/a/avogadro/avogadro_0.9.9-1.dsc
avogadro_0.9.9-1_i386.deb
to pool/main/a/avogadro/avogadro_0.9.9-1_i386.deb
avogadro_0.9.9.orig.tar.gz
to pool/main/a/avogadro/avogadro_0.9.9.orig.tar.gz
libavogadro-dev_0.9.9-1_i386.deb
to pool/main/a/avogadro/libavogadro-dev_0.9.9-1_i386.deb
libavogadro0_0.9.9-1_i386.deb
to pool/main/a/avogadro/libavogadro0_0.9.9-1_i386.deb
python-avogadro_0.9.9-1_i386.deb
to pool/main/a/avogadro/python-avogadro_0.9.9-1_i386.deb
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 551...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Michael Banck <mba...@debian.org> (supplier of updated avogadro package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: RIPEMD160
Format: 1.8
Date: Thu, 22 Oct 2009 14:44:53 +0200
Source: avogadro
Binary: avogadro libavogadro0 libavogadro-dev python-avogadro
Architecture: source i386
Version: 0.9.9-1
Distribution: unstable
Urgency: low
Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org>
Changed-By: Michael Banck <mba...@debian.org>
Description:
avogadro - Molecular Graphics and Modelling System
libavogadro-dev - Molecular Graphics and Modelling System (development files)
libavogadro0 - Molecular Graphics and Modelling System (library)
python-avogadro - Molecular Graphics and Modelling System (Python module)
Closes: 513441 538075 551244
Changes:
avogadro (0.9.9-1) unstable; urgency=low
.
* New upstream release.
+ Fixes german umlauts in the interface (closes: #538075).
.
[ Michael Banck ]
* debian/patches/vibrations_ordering.patch: Removed, applied upstream.
* debian/patches/sip_4.9_support.patch: New patch, recognize new SIP
version, taken from upstream (closes: #551244).
* debian/rules (binary-fixup/python-avogadro): Removed rule, no longer
needed.
* debian/libavogadro0.install: Put extensions, engines and tools into
library package.
* debian/libavogadro-dev.install: Put cmake files into development package.
* debian/avogadro.install: No longer put /usr/lib/avogadro into application
package.
* debian/patches/fix_empty_second_window.patch: New patch, fixes opening an
empty second window when Avogadro gets opened with a molecule, taken from
upstream.
* debian/patches/fix_molpro_input_generator.patch: New patch, makes the
Molpro input generator work again, taken from upstream.
.
[ Daniel Leidert ]
* debian/control: Added python-avogadro package (closes: #513441).
(Build-Depends): Added python-dev and python-central. Increase dh version
to >= 5.0.38 for the latter.
(Standrads-Version): Bumped to 3.8.3.
(Depends): Move Python (module) dependencies to python-avogadro.
(Recommends): Let libavogadro0 recommend python-avogadro.
* debian/rules: Added targets and rules to create new python-avogadro
package. Make sure we comply to the Python policy and depend on
pythonX.Y-foo for the moment.
* debian/libavogadro0.install: Don't install Python module.
* debian/pycomat: Added with compat leven 2.
* debian/python-avogadro.files: Added to move Python scripts over to
python-avogadro.
* debian/python-avogadro.install: Added to install Python module.
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python-avogadro_0.9.9-1_i386.deb
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avogadro_0.9.9-1.diff.gz
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avogadro_0.9.9-1_i386.deb
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libavogadro0_0.9.9-1_i386.deb
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libavogadro-dev_0.9.9-1_i386.deb
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python-avogadro_0.9.9-1_i386.deb
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