Your message dated Tue, 05 Jul 2016 17:03:33 +0000 with message-id <e1bktkz-0001ad...@franck.debian.org> and subject line Bug#811664: fixed in sga 0.10.14-2 has caused the Debian Bug report #811664, regarding FTBFS with GCC 6: cannot convert x to y to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 811664: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=811664 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: sga Version: 0.10.14-1 Severity: important User: debian-...@lists.debian.org Usertags: ftbfs-gcc-6 gcc-6-cannot-convert This package fails to build with GCC 6. GCC 6 has not been released yet, but it's expected that GCC 6 will become the default compiler for stretch. Note that only the first error is reported; there might be more. You can find a snapshot of GCC 6 in experimental. To build with GCC 6, you can set CC=gcc-6 CXX=g++-6 explicitly. > sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on dl580gen9-02.hlinux ... > g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -Wdate-time > -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall > -Wextra -Wno-unknown-pragmas -O3 -c -o libutil_a-VariantIndex.o `test -f > 'VariantIndex.cpp' || echo './'`VariantIndex.cpp > ClusterReader.cpp: In member function 'bool > ClusterReader::readCluster(ClusterRecord&)': > ClusterReader.cpp:70:41: error: cannot convert 'std::basic_istream<char>' to > 'bool' in initialization > bool good = getline(*m_pReader, line); > ^ > > Makefile:722: recipe for target 'libutil_a-ClusterReader.o' failed > make[3]: *** [libutil_a-ClusterReader.o] Error 1 > make[3]: *** Waiting for unfinished jobs.... > StdAlnTools.cpp: In function 'std::__cxx11::string > StdAlnTools::expandCigar(const string&)': > StdAlnTools.cpp:122:34: error: cannot convert 'std::basic_istream<char>' to > 'bool' in initialization > bool success = parser >> code; > ^~~~ > > Makefile:750: recipe for target 'libutil_a-StdAlnTools.o' failed -- Martin Michlmayr Linux for HPE Helion, Hewlett Packard Enterprise
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--- Begin Message ---Source: sga Source-Version: 0.10.14-2 We believe that the bug you reported is fixed in the latest version of sga, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 811...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated sga package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Tue, 05 Jul 2016 15:56:27 +0200 Source: sga Binary: sga Architecture: source amd64 Version: 0.10.14-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: sga - de novo genome assembler that uses string graphs Closes: 811664 Changes: sga (0.10.14-2) unstable; urgency=medium . * Fix gcc-6 issue (thanks to Matei David) Closes: #811664 * cme fix dpkg-control * hardening=+bindnow Checksums-Sha1: 59628bd4ec7f4e98f598ed95334dae95e46b3ca6 2011 sga_0.10.14-2.dsc efb59836f0cb34ead244ec60922cc28e67c5a036 210576 sga_0.10.14-2.debian.tar.xz a8c3777332d0240abeae09a3cf058cf443108183 66330 sga-dbgsym_0.10.14-2_amd64.deb 94d5fb072525b6283ae361e011400a3170fe3cb0 949964 sga_0.10.14-2_amd64.deb Checksums-Sha256: b105b783074377b13a09c55d7ba51f4d1801940a8a92e49b48ca1ad63ac66adc 2011 sga_0.10.14-2.dsc ad68d20e7f639f1ae93197bb6b7933cce7d1dc653e616da2d1964f45c1cba210 210576 sga_0.10.14-2.debian.tar.xz d04786c26efde4f96b9ebf41d2cea884b208ffc67cb75a89db6f9f0b7ea5f31b 66330 sga-dbgsym_0.10.14-2_amd64.deb d1dab2b7e256e261ff7e6e5f2719c82445cfcf6c1abbf155d0a2285a53896ed1 949964 sga_0.10.14-2_amd64.deb Files: 878179ca1ed7712143c160df6f54b2ce 2011 science optional sga_0.10.14-2.dsc ad0f70250eb8af6769118f1e18a8a69c 210576 science optional sga_0.10.14-2.debian.tar.xz 466e1cfbac4f7eb025a52d62496c0cf9 66330 debug extra sga-dbgsym_0.10.14-2_amd64.deb ad90bb28742b091d588ec49af6ef35ca 949964 science optional sga_0.10.14-2_amd64.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQIcBAEBCAAGBQJXe8DNAAoJEFeKBJTRxkbRKNAQAJDHRv1mMbmN5DLraZMCLUjY b9zeheb7dvu9HUKcqR9t6bvn3yKdByWQw/csPlrEfNn6YlShed2TEkrvLbLcty/e QOTOKUrYMjWYzAUbTHaKUzBMkl2a3jENXP6wh+JIn1EjQZRK27+f90FkdV9xAW/m jnG0UwpHVT4nyBAhWirwRIfmaPHwDpKApK8yzU7ldw3WXjvlxlTkpWPMccvkJJi2 uY0cgo7OmxoROqNhMf6kH4s/bEROEJl1GVt222+7ibExMDtCksGwBPCXmVl3Wh/1 zgF1utPVe1FkzMGv1Hzhj9WWhGocrxS/DhsHnf/p9i1dUv26iKgDPisgLc05Ufdc ns/YsP92vHmtQJMlegB0tdAzfmKBJ6Gl77oKtC3wSpuoGh/Q0sfQ3Rm6RtLK9j6d SYmJPYLJ3GZEPFX9e//opIEtiDaslCdD4JdSN4XCiJgxXX+/h7Eb6AFQUK+LykYI Gd/S32Xvj/abzilOEFAsyh/t8oLF0lR20yndrWPkG+Ydu2ovWShCmTuy2tAyU0gI cbXM4DKmcUfpKwdCb9w9eDoJMC5SyYiAjBDFMEooQY6w550DK7rMPjU2MZPsI8l5 A3dJbhDWg52dlA09Xv6hN8I6odetx1RwPkJzFHT5qeovAutjYdcoOavCFZsfIPM2 pZv55RakXN1UjgPfDTF1 =GRaX -----END PGP SIGNATURE-----
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