Your message dated Thu, 25 Feb 2016 16:13:12 -0500 with message-id <20160225211312.ga7...@onerussian.com> and subject line Re: Fwd: [Debian-med-packaging] python-mne is marked for autoremoval from testing has caused the Debian Bug report #813982, regarding python-mne: FTBFS: IndexError: an index can only have a single ellipsis ('...') to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 813982: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=813982 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: python-mne Version: 0.10.1+dfsg-1 Severity: serious Justification: fails to build from source User: reproducible-bui...@lists.alioth.debian.org Usertags: ftbfs X-Debbugs-Cc: reproducible-bui...@lists.alioth.debian.org Dear Maintainer, python-mne fails to build from source in unstable/amd64: [..] ====================================================================== ERROR: Test PSD estimation on epochs ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/usr/lib/python2.7/dist-packages/numpy/testing/decorators.py", line 147, in skipper_func return f(*args, **kwargs) File "/home/lamby/temp/cdt.20160207103006.4o4ykTzhLo/python-mne-0.10.1+dfsg/mne/time_frequency/tests/test_psd.py", line 95, in test_psd_epochs n_fft=n_fft, picks=picks) File "<string>", line 2, in compute_epochs_psd File "/home/lamby/temp/cdt.20160207103006.4o4ykTzhLo/python-mne-0.10.1+dfsg/mne/utils.py", line 551, in verbose return function(*args, **kwargs) File "/home/lamby/temp/cdt.20160207103006.4o4ykTzhLo/python-mne-0.10.1+dfsg/mne/time_frequency/psd.py", line 171, in compute_epochs_psd data = epochs.get_data()[:, picks][..., time_mask] IndexError: an index can only have a single ellipsis ('...') -------------------- >> begin captured stdout << --------------------- Opening raw data file /home/lamby/temp/cdt.20160207103006.4o4ykTzhLo/python-mne-0.10.1+dfsg/mne/io/tests/data/test_raw.fif... Read a total of 3 projection items: PCA-v1 (1 x 102) idle PCA-v2 (1 x 102) idle PCA-v3 (1 x 102) idle Current compensation grade : 0 Range : 25800 ... 40199 = 42.956 ... 66.930 secs Ready. Adding average EEG reference projection. 1 projection items deactivated 2 matching events found Reading 2671 ... 3271 = 4.447 ... 5.446 secs... [done] Applying baseline correction ... (mode: mean) Reading 4350 ... 4950 = 7.243 ... 8.242 secs... [done] Applying baseline correction ... (mode: mean) 0 bad epochs dropped 2 matching events found Reading 2370 ... 3572 = 3.946 ... 5.947 secs... [done] Applying baseline correction ... (mode: mean) Reading 4049 ... 5251 = 6.741 ... 8.743 secs... [done] Applying baseline correction ... (mode: mean) 0 bad epochs dropped --------------------- >> end captured stdout << ---------------------- ====================================================================== ERROR: Test plotting epochs psd (+topomap) ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/usr/lib/python2.7/dist-packages/numpy/testing/decorators.py", line 147, in skipper_func return f(*args, **kwargs) File "/home/lamby/temp/cdt.20160207103006.4o4ykTzhLo/python-mne-0.10.1+dfsg/mne/viz/tests/test_epochs.py", line 164, in test_plot_psd_epochs epochs.plot_psd() File "/home/lamby/temp/cdt.20160207103006.4o4ykTzhLo/python-mne-0.10.1+dfsg/mne/epochs.py", line 868, in plot_psd verbose=None, show=show) File "<string>", line 2, in plot_epochs_psd File "/home/lamby/temp/cdt.20160207103006.4o4ykTzhLo/python-mne-0.10.1+dfsg/mne/utils.py", line 551, in verbose return function(*args, **kwargs) File "/home/lamby/temp/cdt.20160207103006.4o4ykTzhLo/python-mne-0.10.1+dfsg/mne/viz/epochs.py", line 495, in plot_epochs_psd n_jobs=n_jobs) File "<string>", line 2, in compute_epochs_psd File "/home/lamby/temp/cdt.20160207103006.4o4ykTzhLo/python-mne-0.10.1+dfsg/mne/utils.py", line 551, in verbose return function(*args, **kwargs) File "/home/lamby/temp/cdt.20160207103006.4o4ykTzhLo/python-mne-0.10.1+dfsg/mne/time_frequency/psd.py", line 171, in compute_epochs_psd data = epochs.get_data()[:, picks][..., time_mask] IndexError: an index can only have a single ellipsis ('...') -------------------- >> begin captured stdout << --------------------- Opening raw data file /home/lamby/temp/cdt.20160207103006.4o4ykTzhLo/python-mne-0.10.1+dfsg/mne/io/tests/data/test_raw.fif... Read a total of 3 projection items: PCA-v1 (1 x 102) idle PCA-v2 (1 x 102) idle PCA-v3 (1 x 102) idle Current compensation grade : 0 Range : 25800 ... 40199 = 42.956 ... 66.930 secs Ready. Adding average EEG reference projection. 1 projection items deactivated 1 matching events found Created an SSP operator (subspace dimension = 3) 4 projection items activated Reading 2911 ... 3572 = 4.847 ... 5.947 secs... [done] Applying baseline correction ... (mode: mean) 0 bad epochs dropped --------------------- >> end captured stdout << ---------------------- ---------------------------------------------------------------------- Ran 549 tests in 306.354s FAILED (SKIP=193, errors=2) debian/rules:19: recipe for target 'override_dh_auto_test' failed make[1]: *** [override_dh_auto_test] Error 1 make[1]: Leaving directory '/home/lamby/temp/cdt.20160207103006.4o4ykTzhLo/python-mne-0.10.1+dfsg' debian/rules:7: recipe for target 'build' failed make: *** [build] Error 2 [..] The full build log is attached. Regards, -- ,''`. : :' : Chris Lamb `. `'` la...@debian.org / chris-lamb.co.uk `-python-mne.0.10.1+dfsg-1.unstable.amd64.log.txt.gz
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--- Begin Message ---Version: 0.10.2 On Thu, 25 Feb 2016, Yaroslav Halchenko wrote: > > AFAIK this commit: > > https://github.com/jaeilepp/mne-python/commit/59167d767da5c400855265ccc3924285865e9452 > > should do the job. > ah cool -- so it is a part of bugfix release > $> git describe --contains 59167d767da5c400855265ccc3924285865e9452 > v0.10.2^2 hold on ;) this one is old release! ;) and past what we have in debian... so hereby I am just closing this issue marking it as resolved in 0.10.2 (we have 0.11 in debian) -- Yaroslav O. Halchenko Center for Open Neuroscience http://centerforopenneuroscience.org Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755 Phone: +1 (603) 646-9834 Fax: +1 (603) 646-1419 WWW: http://www.linkedin.com/in/yarik
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