Hi,
I managed to build the latest upstream version of sra-toolkit 2.7.0.
I made sure that the vschema files will be found but since I've got
$ latf-load --quality PHRED_33 -o test
/usr/share/doc/python-biopython-doc/Tests/Quality/sanger_93.fastq
2016-09-01T13:27:09 latf-load.2.7 warn:
file="/usr/share/doc/python-biopython-doc/Tests/Quality/sanger_93.fastq"
2016-09-01T13:27:09 latf-load.2.7 warn:
/usr/share/doc/python-biopython-doc/Tests/Quality/sanger_93.fastq:1:12:syntax
error, unexpected fqWS
2016-09-01T13:27:09 latf-load.2.7 warn: The file contained no records that were
processed.
2016-09-01T13:27:09 latf-load.2.7 err: libs/kproc/queue.c:356:KQueuePop: data
empty while reading file within alignment module - accession="test" errors="1"
status="failure"
2016-09-01T13:27:09 latf-load.2.7 err: libs/kproc/queue.c:356:KQueuePop: data
empty while reading file within alignment module - load failed
I reported the issue upstream as issue #39 [1].
Kind regards
Andreas.
[1] https://github.com/ncbi/sra-tools/issues/39
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