Hi,
I have uploaded biojava, do you still need i have a look? Seems sasha did
the job.. :-)
Olivier
Le lun. 5 déc. 2016 22:24, olivier sallou a
écrit :
> Le lun. 5 déc. 2016 à 17:00, Andreas Tille a écrit :
>
> Hi folks,
>
> does anybody feel able to rather patch FactQC than reintroducing the
Le lun. 5 déc. 2016 à 17:00, Andreas Tille a écrit :
> Hi folks,
>
> does anybody feel able to rather patch FactQC than reintroducing the
> outdated API to htsjdk?
I have some work on biojava which requires quite a lot of patch updates for
the moment, but after this I can try to have a look
Hi folks,
does anybody feel able to rather patch FactQC than reintroducing the
outdated API to htsjdk? Same is valid for Artemis. I admit while
reintroducing the old API works I'd consider this only the second best
solution for the problem.
Kind regards
Andreas.
On Mon, Dec 05, 2016 at 0
Hi Andreas,
None of the official FastQC releases has ever used htsjdk - we've been using
the older picard sam.jar API which is substantially different (htsjdk is a
major rewrite and restructure - it's not just a version update). Internally we
have tried the new API, and although it works OK it
Hi Simon,
after uploading htsjdk 2.7.0 FastQC failed to build from source[1]. I
relised that the file src/main/java/htsjdk/samtools/SAMFileReader.java
was removed from htsjdk source and assumed that this was by accident.
However, upstream has dropped this interface intentionally as you can
read b
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