Your message dated Wed, 08 Nov 2017 07:50:18 +0000 with message-id <e1ecl7q-000f5c...@fasolo.debian.org> and subject line Bug#877670: fixed in htslib 1.5-2 has caused the Debian Bug report #877670, regarding bcftools FTBFS on armel, armhf and ppc64el to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 877670: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=877670 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: bcftools Version: 1.5-1 Severity: serious The new version of bcftools no longer builds on ppc64el, it is suffering from test failures.test_mpileup: /<<PKGBUILDDIR>>/bcftools mpileup -a AD -f /<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.fa /<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.bam 2>/dev/null | grep -v ^##bcftools | grep -v ^##reference The outputs differ: /<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.out /<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.out.new .. failed ... test_mpileup: /<<PKGBUILDDIR>>/bcftools mpileup -a AD -f /<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.fa -Ob /<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.bam 2>/dev/null | /<<PKGBUILDDIR>>/bcftools view | grep -v ^##bcftools | grep -v ^##reference The outputs differ: /<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.out /<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.out.new .. failed ... test_mpileup: /<<PKGBUILDDIR>>/bcftools mpileup -a AD -f /<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.fa /<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.cram 2>/dev/null | grep -v ^##bcftools | grep -v ^##reference The outputs differ: /<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.out /<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.out.new .. failed ... test_mpileup: /<<PKGBUILDDIR>>/bcftools mpileup -a AD -f /<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.fa -Ob /<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.cram 2>/dev/null | /<<PKGBUILDDIR>>/bcftools view | grep -v ^##bcftools | grep -v ^##reference The outputs differ: /<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.out /<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.out.new .. failed ...
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--- Begin Message ---Source: htslib Source-Version: 1.5-2 We believe that the bug you reported is fixed in the latest version of htslib, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 877...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated htslib package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Wed, 08 Nov 2017 08:24:26 +0100 Source: htslib Binary: libhts2 libhts-dev htslib-test tabix Architecture: source all amd64 Version: 1.5-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: htslib-test - Test data for HTSlib libhts-dev - Development files for the HTSlib libhts2 - C library for high-throughput sequencing data formats tabix - generic indexer for TAB-delimited genome position files Closes: 877670 Changes: htslib (1.5-2) unstable; urgency=medium . * Apply patch provided by Graham Inggs <gin...@debian.org> to fix FTBFS on armel armhf and ppc64el of bcftools Closes: #877670 * Standards-Version: 4.1.1 Checksums-Sha1: c4a610f521283243267e4f18bb171bcdcbc09c89 2272 htslib_1.5-2.dsc c56ffdffbeac204cb925d717547e8635e6aef538 10172 htslib_1.5-2.debian.tar.xz a952ddb9f8062baca02aea7fed74235b33b0866f 798008 htslib-test_1.5-2_all.deb d8735e38854bb10b2474eed6e0edaa00be9f9788 7313 htslib_1.5-2_amd64.buildinfo 01d871a8be3a501cebf79c0d1e5c120233c1c2f4 395964 libhts-dev_1.5-2_amd64.deb 39d64e59350d405cae1e9c8b2f9533789186ac3f 773008 libhts2-dbgsym_1.5-2_amd64.deb 2f9e8fdacb12e2019e847761fb5fd9e675000c61 292796 libhts2_1.5-2_amd64.deb 7d642ef31d4e58b7dd82a8e32f497b5abf75b08e 1904504 tabix-dbgsym_1.5-2_amd64.deb cad5f86ff8123b04c70904315578fce2f8bab1ac 316244 tabix_1.5-2_amd64.deb Checksums-Sha256: 45b944f3aeecb8fef54507f5546043f35c19a5e12bda2f0e09269f1e760e281a 2272 htslib_1.5-2.dsc 51bd1a5d87e79391c07d67414652444a3ea5c54360d0c48ff58603e07f9ac2f8 10172 htslib_1.5-2.debian.tar.xz 956d6a847f8b3a15ab83863edcf103a9b3c11ede6a547735ceac29f25348ab2a 798008 htslib-test_1.5-2_all.deb 1b458dbf60d7ce5d4ba6ea67a09cb8c39dd093c0720fba5a22b7db7e85ab7e29 7313 htslib_1.5-2_amd64.buildinfo d7b485119d1b50fc1fa5026a5bb6714b852b3c1a2cf479e54f527a7fa85a6bd3 395964 libhts-dev_1.5-2_amd64.deb f946b6ffa64f9b26859a2b214984f15adb5783c6c1c15984c54dd17773812e0c 773008 libhts2-dbgsym_1.5-2_amd64.deb 182f8bf18e1d3ebe2eac49e3d2bcdbd4dfdb2464d6b5dd8fa965a0860226ee51 292796 libhts2_1.5-2_amd64.deb 6d1ebb7506e5dad6e88632092611b40ed4d012f108c7c178d58a767aafe519da 1904504 tabix-dbgsym_1.5-2_amd64.deb 4297164195e3281474225cee3c076d9850de1dea40ce8436948e21e78ed2c9d7 316244 tabix_1.5-2_amd64.deb Files: d3739625138fcc97a3cb57527d58320c 2272 science optional htslib_1.5-2.dsc 64f68b99df2ba502c1396dd0538794b9 10172 science optional htslib_1.5-2.debian.tar.xz 953825891610c3695143a61a13105cd0 798008 science optional htslib-test_1.5-2_all.deb 0a1712e017ff46b014746809c2f01635 7313 science optional htslib_1.5-2_amd64.buildinfo 10d3ef39f903559bede88542429caddb 395964 libdevel optional libhts-dev_1.5-2_amd64.deb fd76d9bc5134c55de814de47cc84d543 773008 debug optional libhts2-dbgsym_1.5-2_amd64.deb b49bac7e50e6646ade78678c7255aa9a 292796 libs optional libhts2_1.5-2_amd64.deb 4dccc2d26dabeec9e415e6c699c18bee 1904504 debug optional tabix-dbgsym_1.5-2_amd64.deb d6b7d595440dc26d8a2b6d965733732c 316244 science optional tabix_1.5-2_amd64.deb -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAloCsg0RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGzpg//YoPCp91ABnxG9IkhiXc6Z4YuFdfTEdX7 jBCzp7vM+kbZn8t0WDaODgRgWMl7a+E/2OZbihzYQ6POjOuBBR53F+Ia4otWwMSH SUIEvqfNnBdrufjWJ6BQz2txelTTz7t9DBfMhxxrc0BkjK6mZOolqf15/+Noo0cl h7Gce2Fk7dW7b7flpHuz6fet6zTJB87/ezEedMkTSaXS2PoVkzlC2YOvx1slY7Ls N4xYXfdAVnAsoQsjNtm2QNgME2RlZvo2NiyKEVUm2y5njfdZW4l7wyI+4oDCbxZq LgQhe5JpqcdzOSiwyfty5fZZ4I1yekI1dvGQGYwQElQXUBGYAuT5uKqot5dyQKpo IqXDkYGw33gb6D54Jv1VWgeXh58WW8NGy0dwNpaTf/b4ap7UjKPT14NASn269B8E si3PCjDfAX8en4sy8PcAG09nEwmMo57UzeTuq7gHXZh+sJr49TShGnnXx5Rk1Uub jjt5aT910BPJXRV+8v64PYdV4zOoa8NxgHfKB/bofWVllozUFe6ZFP4RMVID2wNn MPea+x7GFSwmHqeBdzcoShWeyDqpLrlkEzJ8j/jIbO0tk9JiptbGe6pR/+4BvWwT VSyE2o/iLl9BB/eRBBXUBh5wOxzCjL6ux66Y7kRyX++nbMVt20nXkEdzZm3e44Ta UgAFsmCOSiM= =NbXz -----END PGP SIGNATURE-----
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