Control: tags -1 pending
Control: reassign -1 minimap2
Control: retitle -1 "-flto flag breaks nanopolish"
Hamid, thanks a lot for your investigation.
Kind regards, Andreas.
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Processing control commands:
> tags -1 pending
Bug #956136 [src:nanopolish] nanopolish: FTBFS (undefined references)
Added tag(s) pending.
> reassign -1 minimap2
Bug #956136 [src:nanopolish] nanopolish: FTBFS (undefined references)
Bug reassigned from package 'src:nanopolish' to 'minimap2'.
No
Hi all,
I could find the cause. It is the `-flto` in the compile and link
flags of the libminimap2-dev package. LTO is introduced recently in
the following commit on the [1]:
53883a7ff8c066c14c0ea4e42299ae9958feda6a
Removing `-flto` from CFLAGS and LDFLAGS, then building
libminimap2-dev with
Control: tags -1 help
Hi all,
The undefined reference to those functions, means that there is a
problem in linking with libminimap2 which implements them. Those
functions are implemented in map.c of that library.
I am able to reproduce the bug with pbuilder (sid) on the buster. I made
some
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