Your message dated Wed, 23 Sep 2020 11:48:25 +0200 with message-id <20200923094825.gi...@an3as.eu> and subject line Re: Potential gcc-10 issue "error: conflicting types for ‘uintptr_t’" (Was: Bug#966523: r-bioc-rsubread FTBFS on 32bit: error: conflicting types for ‘uintptr_t’) has caused the Debian Bug report #966523, regarding r-bioc-rsubread FTBFS on 32bit: error: conflicting types for ‘uintptr_t’ to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 966523: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=966523 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: r-bioc-rsubread Version: 2.2.5-1 Severity: serious Tags: ftbfs https://buildd.debian.org/status/package.php?p=r-bioc-rsubread&suite=sid ... In file included from /usr/lib/gcc/i686-linux-gnu/10/include/stdint.h:9, from HelperFunctions.h:139, from R_wrapper.c:35: /usr/include/stdint.h:96:23: error: conflicting types for ‘uintptr_t’ 96 | typedef unsigned int uintptr_t; | ^~~~~~~~~ In file included from R_wrapper.c:30: /usr/share/R/include/Rinterface.h:110:24: note: previous declaration of ‘uintptr_t’ was here 110 | typedef unsigned long uintptr_t; | ^~~~~~~~~ make[1]: *** [/usr/lib/R/etc/Makeconf:167: R_wrapper.o] Error 1
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--- Begin Message ---Hi Paul, On Wed, Sep 23, 2020 at 07:57:09AM +0000, Paul Wise wrote: > It looks like r-base-core is duplicating standard C types and defining > them incorrectly. If you edit /usr/share/R/include/Rinterface.h to > remove uintptr_t, does the build succeed? It turned out that this problem has gone. Thus I'm closing this bug hereby. Kind regards Andreas. -- http://fam-tille.de
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