Your message dated Thu, 05 Nov 2020 19:04:38 +0000
with message-id <e1kakyo-000e9y...@fasolo.debian.org>
and subject line Bug#972812: fixed in python-cobra 0.19.0-1
has caused the Debian Bug report #972812,
regarding python-cobra's autopkg tests are failing with python3.9
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
972812: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=972812
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:python-cobra
Version: 0.18.1-2
Severity: serious
Tags: sid bullseye
User: debian-pyt...@lists.debian.org
Usertags: python3.9
python-cobra assumes that all it's dependencies are packaged for all supported
python3 versions, but libsbml is not packaged that way.
Either package libsbml for all supported python3 versions, or don't assume in
python-cobra that packaging.
Testing with python3.9:
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/usr/lib/python3/dist-packages/cobra/__init__.py", line 40, in <module>
from cobra import io
File "/usr/lib/python3/dist-packages/cobra/io/__init__.py", line 8, in
<module>
from cobra.io.sbml import read_sbml_model, write_sbml_model, \
File "/usr/lib/python3/dist-packages/cobra/io/sbml.py", line 41, in <module>
import libsbml
File "/usr/lib/python3/dist-packages/libsbml/libsbml.py", line 22, in <module>
import _libsbml
ModuleNotFoundError: No module named '_libsbml'
--- End Message ---
--- Begin Message ---
Source: python-cobra
Source-Version: 0.19.0-1
Done: Nilesh Patra <npatra...@gmail.com>
We believe that the bug you reported is fixed in the latest version of
python-cobra, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 972...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Nilesh Patra <npatra...@gmail.com> (supplier of updated python-cobra package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Thu, 05 Nov 2020 22:12:34 +0530
Source: python-cobra
Architecture: source
Version: 0.19.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Nilesh Patra <npatra...@gmail.com>
Closes: 972812
Changes:
python-cobra (0.19.0-1) unstable; urgency=medium
.
[ Andreas Tille ]
* Team upload.
* New upstream version
* importlib_resources is not packaged for Debian thus ignore the test that
needs this module
* pytest.mark.skip did not worked that way. :-(
* Really exclude tests requiring importlib_resources
.
[ Nilesh Patra ]
* Do not use python3-all (Closes: #972812)
- sbml only builds its python extension for the default python
* xfail test_show_versions which xpass during autopkgtest
* Adapt data location with new version
* Rename overrides
Checksums-Sha1:
5a02cdecf189efd2d745e4372c38d84880119b4f 2914 python-cobra_0.19.0-1.dsc
e5de96c2ea53017edf68690bd054c62b2c9a211a 2565648
python-cobra_0.19.0.orig.tar.gz
1e9bc2dbf10f920d20d5a1c40169e8b1328d3503 7496
python-cobra_0.19.0-1.debian.tar.xz
1980f6c7de5f57869c6c59fb9ae7ba22cd998321 10087
python-cobra_0.19.0-1_amd64.buildinfo
Checksums-Sha256:
dc283608a863cf0c2b2a7b638dacabddf2fbe9ead79de3c894adc35091e6615b 2914
python-cobra_0.19.0-1.dsc
6efe6bf93ffc56ab487ab9ddc54e9090d691d7a0783a215c2282ce7ffb97fd25 2565648
python-cobra_0.19.0.orig.tar.gz
584e3143fa947951bf0b6499ed7698de6860309e48bf8802ca470e1b51ddf2b4 7496
python-cobra_0.19.0-1.debian.tar.xz
3e62c0d26a257712797117d0b318244e977342963aac825af7d5888e7c619cf3 10087
python-cobra_0.19.0-1_amd64.buildinfo
Files:
c891bdc3fc00a3ccbf901f7a65206573 2914 python optional python-cobra_0.19.0-1.dsc
9c905b71eac0e58fcfece8f448b65b7f 2565648 python optional
python-cobra_0.19.0.orig.tar.gz
71d8ec0ab4d33d3ce929aa400dca87e6 7496 python optional
python-cobra_0.19.0-1.debian.tar.xz
7d981304ef1e59b6b80a271974a062fa 10087 python optional
python-cobra_0.19.0-1_amd64.buildinfo
-----BEGIN PGP SIGNATURE-----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=E8Sf
-----END PGP SIGNATURE-----
--- End Message ---
