Your message dated Sun, 06 Dec 2020 16:23:07 +0000
with message-id <e1klwov-000aaw...@fasolo.debian.org>
and subject line Bug#976567: fixed in libhmsbeagle 3.1.2+dfsg-9
has caused the Debian Bug report #976567,
regarding libhmsbeagle: FTBFS: GPUInterface.h:221:27: error: there are no
arguments to ‘malloc’ that depend on a template parameter, so a declaration of
‘malloc’ must be available [-fpermissive]
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
976567: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=976567
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: libhmsbeagle
Version: 3.1.2+dfsg-8
Severity: serious
Justification: FTBFS on arm64
Tags: bullseye sid ftbfs
Usertags: ftbfs-20201205 ftbfs-bullseye
Hi,
During a rebuild of all packages in sid, your package failed to build
on arm64 (I don't know if it also fails on amd64).
Relevant part (hopefully):
> /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I.
> -I../../libhmsbeagle -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>> -Wdate-time
> -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-11-openjdk-arm64/include
> -I/usr/lib/jvm/java-11-openjdk-arm64/include/linux -O3 -std=c++11 -D
> FW_OPENCL -I/usr/include/CL/include -g -O2
> -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat
> -Werror=format-security -c -o libhmsbeagle_opencl_la-OpenCLPlugin.lo `test -f
> 'OpenCLPlugin.cpp' || echo './'`OpenCLPlugin.cpp
> libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle
> -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>> -Wdate-time -D_FORTIFY_SOURCE=2
> -I/usr/lib/jvm/java-11-openjdk-arm64/include
> -I/usr/lib/jvm/java-11-openjdk-arm64/include/linux -O3 -std=c++11 -D
> FW_OPENCL -I/usr/include/CL/include -g -O2
> -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat
> -Werror=format-security -c OpenCLPlugin.cpp -fPIC -DPIC -o
> .libs/libhmsbeagle_opencl_la-OpenCLPlugin.o
> In file included from /usr/include/CL/cl.h:20,
> from /usr/include/CL/opencl.h:24,
> from /<<PKGBUILDDIR>>/libhmsbeagle/GPU/GPUInterface.h:60,
> from /<<PKGBUILDDIR>>/libhmsbeagle/GPU/BeagleGPUImpl.h:39,
> from OpenCLPlugin.cpp:8:
> /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h:
> CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’
> 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not
> defined. Defaulting to 300 (OpenCL 3.0)")
> |
> ^
> In file included from /<<PKGBUILDDIR>>/libhmsbeagle/GPU/BeagleGPUImpl.h:39,
> from OpenCLPlugin.cpp:8:
> /<<PKGBUILDDIR>>/libhmsbeagle/GPU/GPUInterface.h: In member function ‘void
> opencl_device::GPUInterface::PrintfDeviceVector(GPUPtr, int, double, int*,
> Real)’:
> /<<PKGBUILDDIR>>/libhmsbeagle/GPU/GPUInterface.h:221:27: error: there are no
> arguments to ‘malloc’ that depend on a template parameter, so a declaration
> of ‘malloc’ must be available [-fpermissive]
> 221 | Real* hPtr = (Real*) malloc(sizeof(Real) * length);
> | ^~~~~~
> /<<PKGBUILDDIR>>/libhmsbeagle/GPU/GPUInterface.h:221:27: note: (if you use
> ‘-fpermissive’, G++ will accept your code, but allowing the use of an
> undeclared name is deprecated)
> make[6]: *** [Makefile:701: libhmsbeagle_opencl_la-OpenCLPlugin.lo] Error 1
The full build log is available from:
http://qa-logs.debian.net/2020/12/05/libhmsbeagle_3.1.2+dfsg-8_unstable.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
If you reassign this bug to another package, please marking it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with me
so that we can identify if something relevant changed in the meantime.
About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.
--- End Message ---
--- Begin Message ---
Source: libhmsbeagle
Source-Version: 3.1.2+dfsg-9
Done: Andreas Tille <ti...@debian.org>
We believe that the bug you reported is fixed in the latest version of
libhmsbeagle, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 976...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated libhmsbeagle package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Sun, 06 Dec 2020 16:53:18 +0100
Source: libhmsbeagle
Architecture: source
Version: 3.1.2+dfsg-9
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Closes: 976567
Changes:
libhmsbeagle (3.1.2+dfsg-9) unstable; urgency=medium
.
* Standards-Version: 4.5.1 (routine-update)
* debhelper-compat 13 (routine-update)
* Set upstream metadata fields: Repository, Repository-Browse.
* Install all *.a files and remove *.la files from debian/tmp
* Add missing stdlib.h
Closes: #976567
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libhmsbeagle_3.1.2+dfsg-9.debian.tar.xz
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Files:
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