Your message dated Wed, 20 Oct 2021 16:04:57 +0000 with message-id <e1mde5j-0001ll...@fasolo.debian.org> and subject line Bug#984106: fixed in libgenome 1.3.11+svn20110227.4616-4 has caused the Debian Bug report #984106, regarding libgenome: ftbfs with GCC-11 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 984106: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=984106 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: src:libgenome Version: 1.3.11+svn20110227.4616-3 Severity: normal Tags: sid bookworm User: debian-...@lists.debian.org Usertags: ftbfs-gcc-11 [This bug is not targeted to the upcoming bullseye release] Please keep this issue open in the bug tracker for the package it was filed for. If a fix in another package is required, please file a bug for the other package (or clone), and add a block in this package. Please keep the issue open until the package can be built in a follow-up test rebuild. The package fails to build in a test rebuild on at least amd64 with gcc-11/g++-11, but succeeds to build with gcc-10/g++-10. The severity of this report will be raised before the bookworm release, so nothing has to be done for the bullseye release. The full build log can be found at: http://people.debian.org/~doko/logs/20210228/filtered/gcc11/libgenome_1.3.11+svn20110227.4616-3_unstable_gcc11.log The last lines of the build log are at the end of this report. To build with GCC 11, either set CC=gcc-11 CXX=g++-11 explicitly, or install the gcc, g++, gfortran, ... packages from experimental. apt-get -t=experimental install g++ Common build failures are new warnings resulting in build failures with -Werror turned on, or new/dropped symbols in Debian symbols files. For other C/C++ related build failures see the porting guide at http://gcc.gnu.org/gcc-11/porting_to.html GCC 11 defaults to the GNU++17 standard. If your package installs header files in /usr/include, please don't work around C++17 issues by choosing a lower C++ standard for the package build, but fix these issues to build with the C++17 standard. [...] /bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 libGenome.pc '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' make[3]: Leaving directory '/<<PKGBUILDDIR>>' make[2]: Leaving directory '/<<PKGBUILDDIR>>' make[1]: Leaving directory '/<<PKGBUILDDIR>>' debian/rules override_dh_install make[1]: Entering directory '/<<PKGBUILDDIR>>' dh_install # Call d-shlibmove to comply with library packaging guide # mv debian/tmp/usr/include/*/* debian/tmp/usr/include/ d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/x86_64-linux-gnu/pkgconfig \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/libgenome-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libgenome0/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.a debian/libgenome-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.so debian/libgenome-dev/usr/lib/x86_64-linux-gnu mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.so.0 debian/libgenome0/usr/lib/x86_64-linux-gnu mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.so.0.1.3 debian/libgenome0/usr/lib/x86_64-linux-gnu PKGDEV=libgenome-dev PKGSHL=libgenome0 install -d -m 755 debian/libgenome-dev/usr/include mv debian/tmp/usr/include/libGenome debian/libgenome-dev/usr/include install -d -m 755 debian/libgenome-dev/usr/lib/x86_64-linux-gnu/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libgenome-dev/usr/lib/x86_64-linux-gnu/pkgconfig find debian -name libGenome.la -delete make[1]: Leaving directory '/<<PKGBUILDDIR>>' dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below dpkg-gensymbols: error: some symbols or patterns disappeared in the symbols file: see diff output below dpkg-gensymbols: warning: debian/libgenome0/DEBIAN/symbols doesn't match completely debian/libgenome0.symbols.amd64 --- debian/libgenome0.symbols.amd64 (libgenome0_1.3.11+svn20110227.4616-3_amd64) +++ dpkg-gensymbolstp7952 2021-03-01 21:07:22.362888236 +0000 @@ -630,7 +630,7 @@ _ZNSt6vectorIN6genome10gnLocationESaIS1_EE6insertEN9__gnu_cxx17__normal_iteratorIPKS1_S3_EERS6_@Base 1.3.11+svn20110227.4616 _ZNSt6vectorIN6genome10gnLocationESaIS1_EED1Ev@Base 1.3.11+svn20110227.4616 _ZNSt6vectorIN6genome10gnLocationESaIS1_EED2Ev@Base 1.3.11+svn20110227.4616 - _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE12emplace_backIJS5_EEEvDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-3# _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE12emplace_backIJS5_EEEvDpOT_@Base 1.3.11+svn20110227.4616 _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJRKS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 1.3.11+svn20110227.4616 _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 1.3.11+svn20110227.4616 _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE6insertEN9__gnu_cxx17__normal_iteratorIPKS5_S7_EERSA_@Base 1.3.11+svn20110227.4616 @@ -660,6 +660,8 @@ _ZNSt7__cxx1110_List_baseINS_12basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE8_M_clearEv@Base 1.3.11+svn20110227.4616 _ZNSt7__cxx1110_List_baseIPKN6genome12gnBaseFilterESaIS4_EE8_M_clearEv@Base 1.3.11+svn20110227.4616 (optional)_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE12_M_constructIPKcEEvT_S8_St20forward_iterator_tag@Base 1.3.11+svn20110227.4616 + _ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEC1IS3_EEPKcRKS3_@Base 1.3.11+svn20110227.4616-3 + _ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEC2IS3_EEPKcRKS3_@Base 1.3.11+svn20110227.4616-3 _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN6genome12gnBaseSourceEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE16_M_insert_uniqueISB_EES6_ISt17_Rb_tree_iteratorISB_EbEOT_@Base 1.3.11+svn20110227.4616 _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN6genome12gnBaseSourceEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE4findERS7_@Base 1.3.11+svn20110227.4616 _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE20_Reuse_or_alloc_nodeclIRKS8_EEPSt13_Rb_tree_nodeIS8_EOT_@Base 1.3.11+svn20110227.4616 dh_makeshlibs: error: failing due to earlier errors make: *** [debian/rules:6: binary] Error 25 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
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--- Begin Message ---Source: libgenome Source-Version: 1.3.11+svn20110227.4616-4 Done: Andreas Tille <ti...@debian.org> We believe that the bug you reported is fixed in the latest version of libgenome, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 984...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated libgenome package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Wed, 20 Oct 2021 17:37:13 +0200 Source: libgenome Architecture: source Version: 1.3.11+svn20110227.4616-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Closes: 984106 Changes: libgenome (1.3.11+svn20110227.4616-4) unstable; urgency=medium . * Update symbols file for gcc-11 Closes: #984106 * Standards-Version: 4.6.0 (routine-update) * No tab in license text (routine-update) * Apply multi-arch hints. + libgenome-dev: Add Multi-Arch: same. Checksums-Sha1: 90a5959a543491ea5383dcaa4c3f77a18476ea0e 2152 libgenome_1.3.11+svn20110227.4616-4.dsc ab1044520088569db950e3e466904a5343aa45f3 10536 libgenome_1.3.11+svn20110227.4616-4.debian.tar.xz da73d042602964b77421a6c75d3872ef1f0db0ad 6993 libgenome_1.3.11+svn20110227.4616-4_amd64.buildinfo Checksums-Sha256: d19a6395fe4bb4f39db813604aa615af5df13ce65aacc3a0b3663488dd5903f2 2152 libgenome_1.3.11+svn20110227.4616-4.dsc 10e03b6b1a12809934e9927f559917898a98fded79ae23161cc2637f1d85e4ab 10536 libgenome_1.3.11+svn20110227.4616-4.debian.tar.xz 1e48568afcbf042a122621fa9087618b3db09b4e36a2de626d2459a28acddb25 6993 libgenome_1.3.11+svn20110227.4616-4_amd64.buildinfo Files: 763a49e2fa354886b62391804a8c8064 2152 science optional libgenome_1.3.11+svn20110227.4616-4.dsc c8dd8aba2356e5f28aa1eddf32c8181c 10536 science optional libgenome_1.3.11+svn20110227.4616-4.debian.tar.xz e586df9f9fee0dec60a2a3b83d82ea20 6993 science optional libgenome_1.3.11+svn20110227.4616-4_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmFwOCkRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHz5g/9FIalXP8SHH+Kv1/VmM4WdxzSOVg/dCTH 4Wso1lGS+oVd2/0D6olRX2HNbj7xXcqJue3zyGKeYil2oFuLx4l1Y5SkJImzMS6w Y1LcNvTX4JxkNhi8od+r2wGpzwPqRKnW5/pOXpG/eC/rNd42hg2jIX/jMFkjU++z njeVT9cOdL3LTu9veSTzjBAOyVT/cCgzpTmC66b+RqXNUZgM7fOniu80jjgX6rrU bSMy7Eianrd6jelO6L/iun+8SdzKx/pvX0AQ6vuxkiiyk8SysOSqnMkQVzatPGeC 5O4F8TZHiXG8QKLWBLlKx8Q+AeJU91w7wJ3uJ+qqXeM7EgyJba+4B2lHZE7OMO/p WKhyZbKhjK8TTmOuZcFNRMfO6f4KU6D4ncjKElgV+CicwW1oAc2rvANfa1J6ou2a xqoFCTqyshnUk/DlzvFpJf2lOdpjyushdjwsiymIOSE6Bj3dKW1qggulhdxy9DZ+ eQ2rI/ScmgpsFfHT0BDrZKp0OiV1NtU8v2a53xc07kOLRl/G22tfXYRvWJ8Ir5bU Up+kyQK3r4ryBRBHcD9oqURtmQTvrj8KV8OF5VrarFq8ABYbgAz4bnWvzn1gZi3A yMwWdpEeyBkWDxhLkcc1iUbyQfqdokHS2XWDg/iGJAfMbeN1sAu70DwFUXAYXBM7 uPVJkBpaluE= =07sC -----END PGP SIGNATURE-----
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