Package: wnpp
Severity: wishlist
Owner: Afif Elghraoui
* Package name: nvchecker
Version : 1.3
Upstream Author : lilydjwg
* URL : https://github.com/lilydjwg/nvchecker
* License : MIT
Programming Lang: Python
Description : new-version checker for
e breakdown: https://docs.gitlab.com/ce/user/permissions.html
Masters can create projects, but not delete them. Only Owners can do that.
Developers also can't push to protected branches (and I believe master
is by default a protected branch).
regards
Afif
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
Hi, Wookey and Chris,
Many thanks for the detailed answer and the links!
على الأربعاء 1 تشرين الثاني 2017 23:19، كتب Wookey:
> On 2017-11-01 21:46 -0400, Afif Elghraoui wrote:
[...]
>> Am I mistaken?
>
> Yes. Somewhat discussed in
> https://bugs.debian.org/cgi-bin/bugrep
_dh_auto_test:
commands...
commands...
else
override_dh_auto_test:
endif
```
Thanks and regards
Afif
1. https://wiki.debian.org/BuildProfileSpec
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
Package: wnpp
Severity: wishlist
Owner: Debian Med Team
Control: block 878962 by -1
Control: block 878963 by -1
* Package name: python-easydev
Version : 0.9.35
Upstream Author : Thomas Cokelaer
* URL : https://easydev-python.readthedocs.io/en/latest/
* License
Package: wnpp
Severity: wishlist
Owner: Debian Med Team
Control: block 878962 by -1
* Package name: python-colormap
Version : 1.0.1
Upstream Author : Thomas Cokelaer
* URL : https://colormap.readthedocs.io/
* License : BSD
Programming Lang: Python
Descripti
Package: wnpp
Severity: wishlist
Owner: Debian Med Team
* Package name: hinge
Version : 0.5
Upstream Author : Govinda Kamath,
Fei Xia,
Ilan Shomorony,
Thomas Courtade, and
David Tse
* URL :
t; Debian packaging follows Debian Policy - other hints do not.
>
Both good points, but upstream is in the best position to decide whether
something is a strong-yet-not-absolute-dependency (Recommends) of their
software. What Ghislain is saying about Python packages here makes a lot
of sense to me.
regards
Afif
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
the TC should even entertain
> overruling a maintainer on.
It's not about targeting the maintainer. It's about clarifying what
should be done. I'd be happy to know whether I should have turned the
pbhoney Recommends into a Depends to avoid unwarranted fallback behavior
when people d
gcon (Recommends of pbhoney) and
will end up using pbhoney's inferior fallback implementation.
regards
Afif
1.
https://networkx.github.io/documentation/networkx-1.10/reference/drawing.html
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
necessarily negative
consequence here.
regards
Afif
1. https://lists.debian.org/debian-devel/2016/04/msg00159.html
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
Hi, Andreas,
على الإثنين 20 شباط 2017 08:26، كتب Andreas Tille:
> Hi Afif
>
> On Mon, Feb 20, 2017 at 08:14:30AM -0800, Afif Elghraoui wrote:
>> Description : phylogenetic analyses on trees and sequences for UNIX
>
> Please drop " for UNIX" here - sinc
Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team
* Package name: phyx
Version : 0.99
Upstream Author : Joseph W. Brown, Joseph F. Walker, and Stephen A. Smith
* URL : https://github.com/FePhyFoFum/phyx
* License : GPL
Programming Lang: C++
.
So as far as I'm concerned, if the dput package had a dcut that supports
the dm subcommand, I'd be very happy.
Thanks and regards
Afif
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team
Control: block 847310 by -1
* Package name: pbcopper
Version : 0.0.1
Upstream Author : Pacific Biosciences
* URL : https://github.com/PacificBiosciences/pbcopper
* License : BSD
Programming La
Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team
* Package name: dascrubber
Version : 0~20160601
Upstream Author : Eugene W. Myers, Jr.
* URL : https://github.com/thegenemyers/DASCRUBBER
* License : BSD
Programming Lang: C
Description
Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team
* Package name: pbtestdata
Version : 0.0.13
Upstream Author : Pacific Biosciences
* URL : https://github.com/PacificBiosciences/PacBioTestData
* License : BSD
Programming Lang: Python
Descri
Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team
* Package name: consensuscore2
Version : 0.12.0
Upstream Author : Pacific Biosciences
* URL : https://github.com/PacificBiosciences/ConsensusCore2
* License : BSD
Programming Lang: C++, Python
Package: wnpp
Severity: wishlist
Owner: Afif Elghraoui
* Package name: sniffles
Version : 0.0.1
Upstream Author : Fritz Sedlazeck
* URL : https://github.com/fritzsedlazeck/Sniffles
* License : MIT
Programming Lang: C++
Description : structural
Package: wnpp
Severity: wishlist
Owner: Afif Elghraoui
Control: block 822414 by -1
* Package name: python-et-xmlfile
Version : 1.0.1
Upstream Author : Charlie Clark and Elias
Rabel
* URL : https://bitbucket.org/openpyxl/et_xmlfile
* License : MIT
Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team
* Package name: sprai
Version : 0.9.9.12
Upstream Author : Takamasa Imai
* URL : http://zombie.cb.k.u-tokyo.ac.jp/sprai/index.html
* License : MIT
Programming Lang: C, Perl, Python
Descripti
على الأربعاء 30 آذار 2016 01:42، كتب Ansgar Burchardt:
> As far as I remember, the testing migration script checks installability
> of arch:all packages on amd64 and i386, and there are manual workarounds
> for arch:all packages that are not installable on these architectures.
> Cc'ed the releas
problem than to work
around this by changing this package's build architecture from "all" to
"any-amd64" (while it's a pure python package-- no compiled code). Is
there something I can do to help fix this?
Thanks and regards
Afif
1. https://qa.debian.org/excuses.p
Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team
* Package name: circlator
Version : 1.2.0
Upstream Author : Martin Hunt & Nishadi De Silva
* URL : http://sanger-pathogens.github.io/circlator/
* License : GPL
Programming Lang: Python
Descr
Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team
* Package name: qsopt-ex
Version : 2.5.10.3
Upstream Author : Daniel Espinoza and others; currently maintained by Jon
Lund Steffenson
* URL : http://www.dii.uchile.cl/~daespino/ESolver_doc/main.html
*
Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team
Control: block 811458 by -1
* Package name: fast5
Version : 0~20150918
Upstream Author : Matei David
* URL : https://github.com/mateidavid/fast5
* License : MIT
Programming Lang: C++
Descript
Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team
* Package name: nanopolish
Version : 0.4.0
Upstream Author : Jared Simpson
* URL : https://github.com/jts/nanopolish
* License : MIT
Programming Lang: C++
Description : consensus caller
Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team
* Package name: poretools
Version : 0.5.1
Upstream Author : Aaron Quinlan & Nick Loman
* URL : http://poretools.readthedocs.org
* License : GPL
Programming Lang: Python
Description : too
Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team
* Package name: lofreq
Version : 2.1.2
Upstream Author : Andreas Wilm and Niranjan Nagarajan
* URL : http://csb5.github.io/lofreq
* License : MIT
Programming Lang: C, Python
Description
Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team
Control: block 395843 by -1
* Package name: falconkit
Version : 0.4.0
Upstream Author : Jason Chin
* URL : https://github.com/PacificBiosciences/FALCON
* License : BSD
Programming Lang: Python
Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team
Control: block 787977 by -1
* Package name: pbbarcode
Version : 0.8.0
Upstream Author : Pacific Biosciences
* URL : https://github.com/PacificBiosciences/pbbarcode
* License : BSD
Programming
Package: wnpp
Severity: wishlist
Owner: Afif Elghraoui
Control: block 807803 by -1
* Package name: python-intervaltree
Version : 2.1.0
Upstream Author : Chaim-Leib Halbert
* URL : https://github.com/chaimleib/intervaltree
* License : Apache 2.0
Programming
Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team
Control: block 807802 by -1
* Package name: python-intervaltree-bio
Version : 1.0.1
Upstream Author : Konstantin Tretyakov
* URL : https://github.com/konstantint/intervaltree-bio
* License : MIT
Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team
Control: block -1 by 796644
* Package name: pbsuite
Version : 15.8.24
Upstream Author : Adam English
* URL : http://sourceforge.net/projects/pb-jelly
* License : BSD
Programming Lang: Python
Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team
* Package name: ensembl-tools
Version : 82
Upstream Author : European Bioinformatics Institute & Wellcome Trust Sanger
Institute
* URL : http://www.ensembl.org/info/docs/tools/index.html
* License
Package: wnpp
Severity: wishlist
Owner: Afif Elghraoui
* Package name: pyconfigure
Version : 0.2.2
Upstream Author : Brandon Invergo
* URL : https://www.gnu.org/software/pyconfigure/
* License : GPL
Programming Lang: Python
Description : automatic
Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team
* Package name: piler
Version : 0~20140707
Upstream Author : Robert Edgar
* URL : http://www.drive5.com/piler/
* License : Public Domain
Programming Lang: C, C++
Description : genomic rep
Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team
* Package name: python-pymummer
Version : 0.6.1
Upstream Author : 2015 Martin Hunt and Nishadi De Silva
* URL : https://github.com/sanger-pathogens/pymummer
* License : GPL
Programming Lang:
Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team
* Package name: bcftools
Version : 1.2
Upstream Author : Petr Danecek, Shane McCarthy and John Marshall
* URL : http://samtools.github.io/bcftools/
* License : GPL or MIT/X
Programming Lang: C
Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team
* Package name: trnascan-se
Version : 1.3.1
Upstream Author : Todd Lowe and colleagues
* URL : http://lowelab.ucsc.edu/tRNAscan-SE
* License : GPL
Programming Lang: C, Perl
Description :
Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team
* Package name: artemis
Version : 16.0.0
Upstream Author : Genome Research Limited
* URL : http://www.sanger.ac.uk/resources/software/artemis
* License : GPL
Programming Lang: Java
Descripti
Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team
Control: block 798872 by -1
* Package name: python-avro
Version : 1.7.7
Upstream Author : Apache Software Foundation
* URL : http://avro.apache.org
* License : Apache 2.0
Programming Lang: Pyth
It seems to have the capabilities to handle the
issues discussed here, but I have not used it myself yet to know for sure.
Afif
1. https://packages.debian.org/sid/config-package-dev
2. https://debathena.mit.edu/config-packages/
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team
* Package name: dazzdb
Version : 1.0
Upstream Author : Eugene W. Myers, Jr.
* URL : https://github.com/thegenemyers/DAZZ_DB
* License : BSD
Programming Lang: C
Description : database lib
Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team
Control: block 797676 by -1
* Package name: pbcommand
Version : 0.2.8
Upstream Author : Pacific Biosciences
* URL : https://github.com/PacificBiosciences/pbcommand
* License : BSD
Programming
Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team
* Package name: pbbam
Version : 0.1.0
Upstream Author : Pacific Biosciences
* URL : https://github.com/PacificBiosciences/pbbam
* License : BSD
Programming Lang: C++
Description : Pacifi
Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging
Control: affects -1 blasr
* Package name: pbseqlib
Version : 0~20150702+git98a302a
Upstream Author : Pacific Biosciences
* URL : https://github.com/PacificBiosciences/blasr_libcpp
* License : BSD
P
Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team
Control: block 787977 by -1
* Package name: python-kineticstools
Version : 0.5.1
Upstream Author : Pacific Biosciences
* URL : https://github.com/PacificBiosciences/kineticsTools
* License : BSD
Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team
Control: block 787977 by -1
* Package name: python-pbalign
Version : 0.2.0
Upstream Author : Pacific Biosciences
* URL : https://github.com/PacificBiosciences/pbalign
* License : BSD
Programmi
Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team
* Package name: daligner
Version : 1.0
Upstream Author : Eugene W. Myers, Jr.
* URL : http://github.com/thegenemyers/DALIGNER
* License : BSD
Programming Lang: C
Description : local alig
Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team
Control: block 787977 by -1
* Package name: pbdagcon
Version : git1d12e13
Upstream Author : Pacific Biosciences
* URL : https://github.com/PacificBiosciences/pbdagcon
* License : BSD**
Program
Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team
Control: block 395843 by -1
* Package name: libuncommons-maths-java
Version : 1.2.3
Upstream Author : Daniel W. Dyer
* URL : http://maths.uncommons.org
* License : Apache
Programming Lang: Java
Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team
Control: block 395843 by -1
* Package name: mhap
Version : 1.6
Upstream Author : Sergey Koren , Konstantin Berlin
* URL : https://github.com/marbl/MHAP
* License : Apache
Programming Lang: Ja
on with the directory
> structure, and that distributions were not to mandate any specific
> directory names.
I've brought this issue up before to the Debian policy. See
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=775318
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
uld it be a good idea for the buildds to automatically submit FTBFS
bug reports? I think maintainers with dozens or hundreds of packages
don't monitor all their build logs.
Regards
Afif
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team
Control: block 794447 by -1
* Package name: pb-consensuscore
Version : 1.0.0
Upstream Author : Pacific Biosciences
* URL : https://github.com/PacificBiosciences/ConsensusCore
* License : BSD
P
Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team
Control: block 787977 by !
* Package name: pb-genomicconsensus
Version : 1.0.0
Upstream Author : Pacific Biosciences
* URL : https://github.com/PacificBiosciences/GenomicConsensus
* License : BS
[Forwarding because line-wrapping messed up processing of Owner and
X-Debbugs-Cc by BTS]
رسالة ممرّرة
الموضوع: ITP: blasr -- mapping single-molecule sequencing reads
التاريخ: Mon, 27 Jul 2015 01:50:11 -0700
مِن: Afif Elghraoui
إلى: Debian Bug Tracking System
Package: wnpp
Package: wnpp
Severity: wishlist
Owner: Afif Elghraoui
X-Debbugs-Cc: debian-devel@lists.debian.org
* Package name: ori
Version : 0.8.1
Upstream Author : Stanford University
* URL : http://ori.scs.stanford.edu/
* License : ori (MIT-like)
Programming Lang: C
team at
Vcs-Git: git://anonscm.debian.org/debian-med/python-cobra.git
Vcs-Browser: http://anonscm.debian.org/cgit/debian-med/python-cobra.git
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
--
To UNSUBSCRIBE, email to debian-devel-requ...@lists.debian.org
with a subject of
it
Vcs-Browser: http://anonscm.debian.org/cgit/debian-med/python-pbh5tools.git
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Vcs-Browser: http://anonscm.debian.org/cgit/debian-med/python-pbcore.git
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Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
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all the components of
SMRTAnalysis, which are managed in separate SCM repositories at
<https://github.com/PacificBiosciences>. It will be maintained by
the Debian Med team at
http://anonscm.debian.org/cgit/debian-med/smrtanalysis.git
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
[Forwarding because I inadvertently left out the Debbugs-Cc header when
originally submitting this]
Package: wnpp
Severity: wishlist
Owner: Debian Med Team
* Package name: kmer-tools
Version : 20141114+1994
Upstream Author : Brian Walenz
* URL : http://kmer.sour
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