Bug#798220: ITP: pbbam -- Pacific Biosciences binary alignment/map (BAM) library

Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team * Package name: pbbam Version : 0.1.0 Upstream Author : Pacific Biosciences * URL :

Accepted daligner 1.0-1 (source amd64) into unstable, unstable

org> Changed-By: Afif Elghraoui <a...@ghraoui.name> Description: daligner - local alignment discovery between long nucleotide sequencing read Closes: 797352 Changes: daligner (1.0-1) unstable; urgency=low . * Initial release (Closes: #797352) Ch

Bug#797676: ITP: python-kineticstools -- detecting DNA modifications from single molecule, real-time sequencing data

Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team Control: block 787977 by -1 * Package name: python-kineticstools Version : 0.5.1 Upstream Author : Pacific Biosciences * URL

Bug#797675: ITP: python-pbalign -- maps Pacific Biosciences reads to reference sequences

Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team Control: block 787977 by -1 * Package name: python-pbalign Version : 0.2.0 Upstream Author : Pacific Biosciences * URL :

Accepted python-pbh5tools 0.8.0+dfsg-1 (source all amd64) into unstable, unstable

debian-med-packag...@lists.alioth.debian.org Changed-By: Afif Elghraoui a...@ghraoui.name Description: python-pbh5tools - tools for manipulating HDF5 files produced by Pacific Biosciences python-pbh5tools-doc - tools for manipulating HDF5 files produced by Pacific Biosciences Closes: 787982

Bug#797352: ITP: daligner -- local alignment discovery between long nucleotide sequencing reads

Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org * Package name: daligner Version : 1.0 Upstream Author : Eugene W. Myers, Jr. gene.my...@gmail.com * URL : http://github.com/thegenemyers/DALIGNER * License

Accepted python-cobra 0.4.0b3-1 (source all amd64) into unstable

Team debian-med-packag...@lists.alioth.debian.org Changed-By: Afif Elghraoui a...@ghraoui.name Description: python-cobra - constraint-based modeling of biological networks (Python 2) python-cobra-data - constraint-based modeling of biological networks (data) python3-cobra - constraint-based

Bug#796644: ITP: pbdagcon -- sequence consensus algorithm implementation based on directed acyclic graphs

Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org Control: block 787977 by -1 * Package name: pbdagcon Version : git1d12e13 Upstream Author : Pacific Biosciences dev...@pacificbiosciences.com * URL :

Bug#796643: ITP: libuncommons-maths-java -- Random number generators, probability distributions, combinatorics and statistics for Java

Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org Control: block 395843 by -1 * Package name: libuncommons-maths-java Version : 1.2.3 Upstream Author : Daniel W. Dyer * URL : http://maths.uncommons.org *

Bug#796640: ITP: mhap -- locality-sensitive hashing to detect long-read overlaps

Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org Control: block 395843 by -1 * Package name: mhap Version : 1.6 Upstream Author : Sergey Koren ser...@umd.edu, Konstantin Berlin kber...@umd.edu * URL :

Re: Bug#796529: ITP: local-apt-repository -- Ready to use local apt repository

, and that distributions were not to mandate any specific directory names. I've brought this issue up before to the Debian policy. See https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=775318 -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Re: Bits from the Wanna Build team

maintainers with dozens or hundreds of packages don't monitor all their build logs. Regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Accepted ori 0.8.1+ds1-1 (source amd64) into unstable, unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Sat, 11 Jul 2015 18:39:19 -0700 Source: ori Binary: ori Architecture: source amd64 Version: 0.8.1+ds1-1 Distribution: unstable Urgency: low Maintainer: Afif Elghraoui a...@ghraoui.name Changed-By: Afif Elghraoui a...@ghraoui.name

Accepted blasr 0~20150724+git3ca7fe8-1 (source amd64) into unstable, unstable

...@lists.alioth.debian.org Changed-By: Afif Elghraoui a...@ghraoui.name Description: blasr - mapping single-molecule sequencing reads Closes: 793763 Changes: blasr (0~20150724+git3ca7fe8-1) unstable; urgency=low . * Initial release (Closes: #793763) * Statically link native libraries and dynamically

Accepted python-pbcore 1.2.2+dfsg1-1 (source all) into unstable

-packag...@lists.alioth.debian.org Changed-By: Afif Elghraoui a...@ghraoui.name Description: python-pbcore - Python library for processing PacBio data files python-pbcore-doc - Python library for processing PacBio data files (documentation) Changes: python-pbcore (1.2.2+dfsg1-1) unstable; urgency

Accepted python-cobra 0.4.0b2-1 (source all amd64) into unstable

Team debian-med-packag...@lists.alioth.debian.org Changed-By: Afif Elghraoui a...@ghraoui.name Description: python-cobra - constraint-based modeling of biological networks (Python 2) python-cobra-data - constraint-based modeling of biological networks (data) python3-cobra - constraint-based

Bug#794450: ITP: pb-consensuscore -- library of multiple nucleotide sequence consensus routines

Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org Control: block 794447 by -1 * Package name: pb-consensuscore Version : 1.0.0 Upstream Author : Pacific Biosciences dev...@pacificbiosciences.com * URL :

Bug#794447: ITP: pb-genomicconsensus -- Pacific Biosciences variant and consensus caller

Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org Control: block 787977 by ! * Package name: pb-genomicconsensus Version : 1.0.0 Upstream Author : Pacific Biosciences dev...@pacificbiosciences.com * URL :

ITP: blasr -- mapping single-molecule sequencing reads

[Forwarding because line-wrapping messed up processing of Owner and X-Debbugs-Cc by BTS] رسالة ممرّرة الموضوع: ITP: blasr -- mapping single-molecule sequencing reads التاريخ: Mon, 27 Jul 2015 01:50:11 -0700 مِن: Afif Elghraoui a...@ghraoui.name إلى: Debian Bug Tracking System

Accepted kmer-tools 0~20150520+2004-1 (source amd64) into unstable, unstable

-med-packag...@lists.alioth.debian.org Changed-By: Afif Elghraoui a...@ghraoui.name Description: kmer - suite of tools for DNA sequence analysis libkmer-dev - suite of tools for DNA sequence analysis (development lib) libmeryl-dev - in- and out-of-core kmer counting and utilities

Accepted python-pysam 0.8.3+ds1-2 (source all amd64) into unstable

Team debian-med-packag...@lists.alioth.debian.org Changed-By: Afif Elghraoui a...@ghraoui.name Description: python-pysam - interface for the SAM/BAM sequence alignment and mapping format ( python-pysam-tests - interface for the SAM/BAM sequence alignment and mapping format ( python3-pysam

Bug#792664: ITP: ori -- secure distributed file system

Package: wnpp Severity: wishlist Owner: Afif Elghraoui a...@ghraoui.name X-Debbugs-Cc: debian-devel@lists.debian.org * Package name: ori Version : 0.8.1 Upstream Author : Stanford University orifs-de...@lists.stanford.edu * URL : http://ori.scs.stanford.edu/ * License

Accepted python-cobra 0.4.0b1-2 (source all amd64) into unstable

Team debian-med-packag...@lists.alioth.debian.org Changed-By: Afif Elghraoui a...@ghraoui.name Description: python-cobra - constraint-based modeling of biological networks (Python 2) python-cobra-data - constraint-based modeling of biological networks (data) python3-cobra - constraint-based

Accepted python-pbcore 1.0.0-1 (source all) into experimental, experimental

Med Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Afif Elghraoui a...@ghraoui.name Description: python-pbcore - Python library for processing PacBio data files (Python 2) python-pbcore-data - Python library for processing PacBio data files (data) python-pbcore-doc

Accepted python-cobra 0.4.0b1-1 (source all amd64) into unstable

Team debian-med-packag...@lists.alioth.debian.org Changed-By: Afif Elghraoui a...@ghraoui.name Description: python-cobra - constraint-based modeling of biological networks (Python 2) python-cobra-data - constraint-based modeling of biological networks (data) python3-cobra - constraint-based

Accepted python-cobra 0.3.2-1 (source all amd64) into unstable, unstable

debian-med-packag...@lists.alioth.debian.org Changed-By: Afif Elghraoui a...@ghraoui.name Description: python-cobra - constraint-based modeling of biological networks (Python 2) python-cobra-data - constraint-based modeling of biological networks (data) python3-cobra - constraint-based modeling

Accepted python-pysam 0.8.3+ds1-1 (source all amd64) into experimental, experimental

Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Afif Elghraoui a...@ghraoui.name Description: python-pysam - interface for the SAM/BAM sequence alignment and mapping format ( python-pysam-tests - interface for the SAM/BAM sequence alignment and mapping format ( python3-pysam

Bug#788224: ITP: python-cobra -- constraint-based modeling of biological networks

. This packaging will be maintained by the Debian Med team at Vcs-Git: git://anonscm.debian.org/debian-med/python-cobra.git Vcs-Browser: http://anonscm.debian.org/cgit/debian-med/python-cobra.git -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name -- To UNSUBSCRIBE, email to debian-devel-requ

Bug#787982: ITP: python-pbh5tools -- tools for manipulating HDF5 files produced by, Pacific Biosciences sequencing instruments

://anonscm.debian.org/debian-med/python-pbh5tools.git Vcs-Browser: http://anonscm.debian.org/cgit/debian-med/python-pbh5tools.git -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name -- To UNSUBSCRIBE, email to debian-devel-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact

Bug#787981: ITP: python-pbcore -- Python library for processing Pacific Biosciences data, files

will be by the Debian Med team at Vcs-Git: git://anonscm.debian.org/debian-med/python-pbcore.git Vcs-Browser: http://anonscm.debian.org/cgit/debian-med/python-pbcore.git -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name -- To UNSUBSCRIBE, email to debian-devel-requ...@lists.debian.org

Bug#787977: ITP: smrtanalysis -- software suite for single molecule, real-time sequencing

sequences. This is intended as a metapackage to depend on all the components of SMRTAnalysis, which are managed in separate SCM repositories at https://github.com/PacificBiosciences. It will be maintained by the Debian Med team at http://anonscm.debian.org/cgit/debian-med/smrtanalysis.git -- Afif

Bug#784863: ITP: kmer-tools -- suite of tools for DNA sequence analysis

[Forwarding because I inadvertently left out the Debbugs-Cc header when originally submitting this] Package: wnpp Severity: wishlist Owner: Debian Med Team debian-...@lists.debian.org * Package name: kmer-tools Version : 20141114+1994 Upstream Author : Brian Walenz

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