Bug#1027055: ITP: python-hiyapyco -- A simple python lib allowing hierarchical overlay of config files

Package: wnpp Severity: wishlist Owner: Steffen Moeller X-Debbugs-Cc: debian-devel@lists.debian.org, moel...@debian.org * Package name: python-hiyapyco Version : 0.5.1 * URL : https://github.com/zerwes/hiyapyco * License : GPL Programming Lang: Python

Bug#1018681: ITP: spnavcfg -- GUI to configure 3Dconnexion devices

Package: wnpp Severity: wishlist Owner: Steffen Moeller X-Debbugs-Cc: debian-devel@lists.debian.org * Package name: spnavcfg Version : 1.0 * URL : https://github.com/FreeSpacenav/spnavcfg * License : GPL Description : GUI to configure 3Dconnexion devices

Bug#1018294: ITP: openfpgaloader -- Universal utility for programming FPGAs

Package: wnpp Severity: wishlist Owner: Steffen Moeller X-Debbugs-Cc: debian-devel@lists.debian.org * Package name: openfpgaloader Version : 0.9 * URL : https://github.com/trabucayre/openFPGALoader * License : Apache-2.0 Programming Lang: C/C++ Description

Bug#963618: ITP: quast -- Quality Assessment Tool for Genome Assemblies

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: quast Version : 5.0.2 * URL : https://github.com/ablab/quast * License : GPL-2.0 Programming Lang: Python Description : Quality Assessment Tool for Genome Assemblies This package is

Bug#962717: ITP: q2-quality-control -- QIIME 2 plugin for quality assurance of feature and sequence data

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: q2-quality-control Version : 2020.2.0 * URL : https://github.com/qiime2/q2-quality-control * License : BSD-3-Clause Programming Lang: Python Description : QIIME 2 plugin for quality

Bug#933969: ITP: r-cran-corrplot -- Visualization of a Correlation Matrix

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: r-cran-corrplot * URL : https://cran.r-project.org/package=corrplot * License : MIT Programming Lang: R Description : Visualization of a Correlation Matrix Team maintained on https

Bug#933670: ITP: python-alignlib -- edit and hamming distance computation

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: python-alignlib Version : 0.1.1 * URL : https://github.com/marcelm/alignlib * License : MIT Programming Lang: C and Python Description : edit and hamming distance computation Team

Bug#932904: ITP: cthreadpool -- minimalistic thread pool implementation

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: cthreadpool Version : unversioned * URL : https://github.com/Pithikos/C-Thread-Pool * License : MIT Programming Lang: C Description : minimalistic thread pool implementation Team

Bug#932554: ITP: ricks-amdgpu-utils -- commandline AMD GPU monitoring and optimization

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: ricks-amdgpu-utils Version : 2.5.1 * URL : https://github.com/Ricks-Lab/amdgpu-utils * License : GPL Programming Lang: Python Description : commandline AMD GPU monitoring and

Bug#931841: ITP: python-dateutils -- complex operations on dates/times

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: python-dateutils Version : 0.6.5 * URL : https://github.com/plytophogy/python-dateutils * License : BSD Programming Lang: Python Description : complex operations on dates/times To

Bug#931704: ITP: r-cran-rook -- web server interface for R

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: r-cran-rook Version : 1.1 * URL : https://cran.r-project.org/web/packages/Rook * License : GPL-2 Programming Lang: R Description : web server interface for R Group maintained on

Bug#931174: ITP: libjs-scribl -- HTML5 canvas genomics graphic library

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: libjs-scribl * URL : http://chmille4.github.io/Scribl/ * License : MIT Programming Lang: JavaScript Description : HTML5 canvas genomics graphic library To be team maintained on salsa.d.o/med

Bug#930452: ITP: openboardview -- viewer of schematics for electronic boards

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: openboardview * URL : https://openboardview.org * License : MIT Description : viewer of schematics for electronic boards To be team-maintained on https://salsa.debian.org/electronics-team

Bug#930216: ITP: python-noise -- Perlin noise for image generation

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: python-noise Version : 1.2.3 * URL : https://github.com/casemane/noise * License : MIT Programming Lang: Python Description : Perlin noise for image generation To be team maintained

Bug#930078: ITP: utf8.h -- header files providing utf8-ready string handing

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: utf8.h Upstream Author : Neil Henning * URL : https://github.com/sheredom/utf8.h * License : Unlicense-Licensed Programming Lang: C/C++ Description : header files providing utf8-ready string

Bug#929939: ITP: pizzly -- gene-fusion detection with kallisto

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: pizzly * URL : http://github.com/pmeisted/pizzly * License : BSD Programming Lang: C++ Description : gene-fusion detection with kallisto Team-maintained on https://salsa.debian.org/med-team

Bug#929741: ITP: wham -- Wisconsin's High-Throughput Alignment Method

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: wham * URL : http://www.cs.wisc.edu/wham/ * License : GPL Programming Lang: C Description : Wisconsin's High-Throughput Alignment Method To be team-maintained on salsa.debian.org/med

Bug#929708: ITP: python-geneimpacts -- wraps tools to assess variants in gene sequences

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: python-geneimpacts * URL : https://github.com/brentp/geneimpacts * License : MIT/X Programming Lang: Python Description : wraps tools to assess variants in gene sequences To be team

Bug#929118: ITP: r-cran-webgestaltr -- multiple flavours of gene set enrichment analyses

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: r-cran-webgestaltr * URL : https://cran.r-project.org/package=WebGestaltR * License : GPL Programming Lang: R Description : multiple flavours of gene set enrichment analyses To be team

Bug#929117: ITP: r-cran-ggrepel -- auto-position non-overlapping text labels in plots

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: r-cran-ggrepel * URL : https://github.com/deeptools/pyBigWig * License : GPL Programming Lang: R Description : auto-position non-overlapping text labels in plots To be team-maintained on

Bug#928690: ITP: libsmithlab -- low-level code collection for computational biology

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: libsmithlab * URL : https://github.com/smithlabcode/smithlab_cpp * License : GPL Programming Lang: C++ Description : low-level code collection for computational biology To be team-maintained

Bug#928665: ITP: python-pybigwig -- read/write chromosomal sequence data in bigWig files

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: python-pybigwig Version : 0.3.15 * URL : https://github.com/deeptools/pyBigWig * License : MIT Programming Lang: Python Description : read/write chromosomal sequence data in bigWig

Bug#928400: ITP: libbigwig -- C library for handling bigWig files

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: libbigwig Version : 0.4.2 * URL : https://github.com/dpryan79/libBigWig/ * License : MIT Programming Lang: C Description : C library for handling bigWig files To be team maintained

Bug#928239: ITP: r-cran-openimager -- read, analyse, modify, write images with R

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: r-cran-openimager * URL : https://cran.r-project.org/web/packages/OpenImageR * License : Misc. non-free Programming Lang: R Description : read, analyse, modify, write images with R Team

Bug#928238: ITP: r-cran-tiff -- read and write TIFF images with R

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: r-cran-tiff * URL : https://cran.r-project.org/web/packages/tiff/ * License : GPL Programming Lang: R Description : read and write TIFF images with R Team maintained on https

Bug#928237: ITP: r-cran-jpeg -- read and write JPEG images with R

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: r-cran-jpeg * URL : https://cran.r-project.org/package=jpeg * License : GPL Programming Lang: R Description : read and write JPEG images with R Team-maintained on https://salsa.debian.org/r

Bug#928074: ITP: nim-docopt -- command line interface generator and arg parser

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: nim-docopt * URL : https://github.com/docopt/docopt.nim/ * License : MIT Programming Lang: nim Description : command line interface generator and arg parser The package is to be team

Bug#928071: ITP: nim-unicodeplus -- common unicode operations

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: nim-unicodeplus Version : 0.4.0 * URL : https://github.com/nitely/nim-unicodeplus * License : MIT Programming Lang: nim Description : common unicode operations To be team-maintained

Bug#928023: ITP: nim-regex -- library for parsing and executing regular expressions

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: nim-regex Version : 0.4.0 * URL : https://github.com/nitely/nim-regex * License : MIT Programming Lang: nim Description : library for parsing and executing regular expressions This

Bug#927967: ITP: nim-unicodedb -- unicode support for nim

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: nim-unicodedb Version : 0.6.0 * URL : https://github.com/nitely/nim-unicodedb * License : MIT Programming Lang: nim Description : unicode support for nim The package is to be team

Bug#927364: ITP: tophat-recondition -- post-processor for TopHat unmapped reads

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: tophat-recondition * URL : https://github.com/cbrueffer/tophat-recondition * License : custom Programming Lang: Python Description : post-processor for TopHat unmapped reads The package is to

Bug#925304: ITP: multiqc -- output gathering for RNA sequencing across tools and samples

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: multiqc * URL : https://github.com/ewels/MultiQC * License : GPL3 Programming Lang: Python Description : output gathering for RNA sequencing across tools and samples To be team-maintained on

Bug#924582: ITP: genome-code-lib -- C++ library to handle biological short sequence data

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: genome-code-lib Version : 0.10.8 * URL : https://github.com/gpertea/gclib * License : Artistic-2.0 Programming Lang: C++ Description : C++ library to handle biological short sequence

Bug#924101: ITP: stringtie -- assemble short RNAseq reads to transcripts

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: stringtie * URL : http://ccb.jhu.edu/software/stringtie/ * License : Artistic-2.0 Description : assemble short RNAseq reads to transcripts To be team-maintained by Debian Med at https

Bug#922634: ITP: r-cran-apcluster -- Affinity Propagation Clustering

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: r-cran-apcluster * URL : https://cran.r-project.org/web/packages/apcluster/index.html * License : GPL-2+ Programming Lang: C/R Description : Affinity Propagation Clustering To be team

Bug#921514: ITP: spaln -- splicing-aware transcript-alignment to genomic DNA

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: spaln Version : 2.3.2b Upstream Author : Osamu Gotoh * URL : http://www.genome.ist.i.kyoto-u.ac.jp/~aln_user/spaln * License : GPL Programming Lang: C, Perl Description : splicing

Bug#921182: ITP: braker -- guides from NGS to whole genome annotation

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: braker Version : 2.1.2 Upstream Author : K.J. Hoff * URL : https://github.com/Gaius-Augustus/BRAKER * License : Artistic Programming Lang: Perl Description : guides from NGS to

Bug#921171: ITP: liblogger-simple-perl -- Simran-Log-Log and Simran-Error-Error modules

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: liblogger-simple-perl Version : 2.0 Upstream Author : Thomas Stanley * URL : https://metacpan.org/pod/distribution/Logger-Simple/Simple.pm * License : GPL or Artistic Programming Lang

Bug#919719: ITP: python-sqt -- SeQuencing Tools

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: python-sqt Version : 0.8.0 * URL : https://bitbucket.org/marcelm/sqt * License : MIT/X Programming Lang: Python Description : SeQuencing Tools To be co-maintained on

Bug#919718: ITP: igdiscover -- analyse immune repertoire to find new V genes

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: igdiscover Version : 0.11 * URL : https://github.com/NBISweden/IgDiscover * License : MIT/X Programming Lang: Python Description : analyse immune repertoire to find new V genes To

Bug#919386: ITP: r-cran-circlize -- Circular Visualization

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: r-cran-circlize Version : 0.4.5 * URL : https://cran.r-project.org/web/packages/circlize/ * License : MIT Programming Lang: R Description : Circular Visualization To be team

Bug#919380: ITP: r-cran-globaloptions -- Generate Functions to Get or Set Global Options

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: r-cran-globaloptions * URL : https://cran.r-project.org/web/packages/GlobalOptions/index.html * License : MIT Programming Lang: R Description : Generate Functions to Get or Set Global Options

Bug#919329: ITP: r-cran-venndiagram -- Generate High-Resolution Venn and Euler Plots

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: r-cran-venndiagram * URL : https://cran.r-project.org/web/packages/VennDiagram/ * License : GPL-2 Programming Lang: R Description : Generate High-Resolution Venn and Euler Plots To be team

Bug#919313: ITP: r-cran-ffield -- Force field simulation for a set of points

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: r-cran-ffield Version : 0.1.0 * URL : https://cran.r-project.org/web/packages/FField/index.html * License : GPL-3 Programming Lang: R Description : Force field simulation for a set

Bug#915057: ITP: redberry-pipe -- implementation of concurrent pipelines

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: redberry-pipe Version : 0.9.7 * URL : https://bitbucket.org/redberry/redberry-pipe * License : GPL Programming Lang: Java Description : implementation of concurrent pipelines

Bug#913826: ITP: presto -- high-throughput lymphocyte receptor sequences processing

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: presto Version : 0.5.2 * URL : https://pypi.org/project/presto/ * License : MIT Programming Lang: Python Description : high-throughput lymphocyte receptor sequences processing

Bug#913807: ITP: yamlordereddictloader -- loader and dump for PyYAML keeping keys order

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: yamlordereddictloader Version : 0.4.0 * URL : https://github.com/fmenabe/python-yamlordereddictloader * License : MIT Programming Lang: Python Description : loader and dump for

Bug#913805: ITP: python-airr -- AIRR Community Data Representation Standard reference library for antibody and TCR sequencing data.

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: python-airr Version : 1.2.1 * URL : https://pypi.org/project/airr/ * License : CC-BY-4.0 Programming Lang: Python Description : AIRR Community Data Representation Standard reference

Bug#911850: ITP: tracetuner -- Interpretation of raw data from DNA sequencers

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: tracetuner Version : 3.0.6 beta * URL : https://sourceforge.net/projects/tracetuner/ * License : GPL Programming Lang: C, Java Description : Interpretation of raw data from DNA

Bug#911721: ITP: gramalign -- alignment of multiple biological sequences

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: gramalign Version : 3.0 * URL : http://bioinfo.unl.edu/gramalign.php * License : academic non-free Description : alignment of multiple biological sequences About to appear on

Bug#911162: ITP: pybel -- Python interface to OpenBabel

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: pybel * URL : https://github.com/pybel/pybel * License : Apache Programming Lang: Python Description : Python interface to OpenBabel It is a bit more than that, anyway, hoping to appear on

Bug#911116: ITP: python-anyqt -- Qt4/Qt5 compatibility layer

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: python-anyqt * URL : https://github.com/ales-erjavec/anyqt * License : GPL Programming Lang: Python Description : Qt4/Qt5 compatibility layer About to appear on salsa.debian.org/python-team

Bug#911111: ITP: python-louvain -- community graph analysis implementing Louvain method

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: python-louvain * URL : https://github.com/taynaud/python-louvain * License : BSD Programming Lang: Python Description : community graph analysis implementing Louvain method A dependency for

Bug#911106: ITP: orange3 -- machine learning suite for python

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: orange3 Version : 3.0.15 * URL : https://orange.biolab.si * License : GPL Programming Lang: C, C++, Python Description : machine learning suite for python About to appear on https

Bug#911105: ITP: python-serverfiles -- accesses files on a HTTP server and stores them locally for reuse

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: python-serverfiles Version : 0.2.1 * URL : https://github.com/biolab/serverfiles * License : GPL Programming Lang: Python Description : accesses files on a HTTP server and stores

Bug#910499: ITP: schroedinger-coordgenlibs -- 2D coordinate generation for chemical compounds

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: schroedinger-coordgenlibs * URL : https://github.com/schrodinger/coordgenlibs * License : BSD Programming Lang: C++ Description : 2D coordinate generation for chemical compounds About to be

Bug#910290: ITP: schroedinger-maeparser -- parser for the Maestro (.mae) file format

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: schroedinger-maeparser Version : 1.0.1 Upstream Author : Schroedinger * URL : https://github.com/schrodinger/maeparser * License : BSD-like Programming Lang: C++ Description

Bug#909335: ITP: python-glad -- GL/GLES/EGL/GLX/WGL Loader-Generator

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: python-glad * URL : https://github.com/Dav1dde/glad * License : MIT Description : GL/GLES/EGL/GLX/WGL Loader-Generator The package is team-maintained on https://salsa.debian.org/python-team

Bug#908233: ITP: mview -- biological sequence alignment conversion

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: mview Version : 1.64 * URL : https://desmid.github.io/mview/ * License : GPL Programming Lang: Perl Description : biological sequence alignment conversion Team-maintained on https

Bug#908215: ITP: lagan -- highly parametrizable pairwise global genome sequence aligner

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: lagan * URL : http://lagan.stanford.edu/lagan_web/index.shtml * License : GPL Programming Lang: C++ Description : highly parametrizable pairwise global genome sequence aligner The package is

Bug#908110: ITP: lucy -- DNA sequence quality and vector trimming tool

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: lucy Version : 1.20 * URL : http://lucy.sourceforget.net * License : Artistic Programming Lang: C Description : DNA sequence quality and vector trimming tool Team-maintained on

Bug#907690: ITP: elph -- DNA/protein sequence motif finder

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: elph Version : 1.0.1 * URL : http://www.cbcb.umd.edu/software/ELPH/ * License : Artistic Programming Lang: C++ Description : DNA/protein sequence motif finder ELPH (Estimated

Bug#907179: ITP: caftools -- maintenance of DNA sequence assemblies

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: caftools Version : 2.0.2 * URL : https://www.sanger.ac.uk/science/tools/caf * License : GPL-3 Programming Lang: C Description : maintenance of DNA sequence assemblies One of the

Bug#903602: ITP: yaha -- find split-read mappings on single-end queries

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: yaha * URL : https://github.com/GregoryFaust/yaha * License : MIT Programming Lang: C/C++ Description : find split-read mappings on single-end queries Team-maintained on https

Bug#903582: ITP: mirtop -- annotate miRNAs with a standard mirna/isomir naming

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: mirtop * URL : https://github.com/miRTop/mirtop * License : MIT Programming Lang: Python Description : annotate miRNAs with a standard mirna/isomir naming Team-maintained on https

Bug#903515: ITP: samblaster -- marks duplicates, extracts discordant/split reads

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: samblaster * URL : https://github.com/GregoryFaust/samblaster * License : MIT Programming Lang: C Description : marks duplicates, extracts discordant/split reads Team-maintained at https

Bug#903507: ITP: delly -- structural variant discovery by read analysis

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: delly Version : 0.7.8 Upstream Author : Tobias Rausch * URL : https://github.com/dellytools/delly * License : GPL Programming Lang: C++ Description : structural variant discovery

Bug#903386: ITP: bcbio -- toolkit for analysing high-throughput sequencing data

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: bcbio * URL : https://github.com/bcbio/bcbio-nextgen * License : MIT Programming Lang: Python Description : toolkit for analysing high-throughput sequencing data Team-maintained at https

Bug#903345: ITP: python-seqcluster -- analysis of small RNA in NGS data

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: python-seqcluster * URL : https://github.com/lpantano/seqcluster * License : MIT Programming Lang: Python Description : analysis of small RNA in NGS data About to appear at https

Bug#903207: ITP: vdjtools -- post-analysis of B/T cell repertoires

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: vdjtools Version : 1.1.9 * URL : https://milaboratory.com/software/vdjtools/ * License : MIT/X-like Programming Lang: Java Description : post-analysis of B/T cell repertoires To

Bug#903134: ITP: milib -- library for Next Generation Sequencing (NGS) data processing

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: milib Version : 1.8.4 * URL : https://github.com/milaboratory/milib * License : Apache Programming Lang: Java Description : library for Next Generation Sequencing (NGS) data

Bug#902960: ITP: sweed -- assessment of SNPs for their evolutionary advantage

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: sweed Version : 3.2.1 * URL : https://sco.h-its.org/exelixis/web/software/sweed/ * License : GPL Programming Lang: C Description : assessment of SNPs for their evolutionary advantage

Bug#902940: ITP: omegamap -- describing selection and recombination in sequences

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: omegamap Version : 0.5 Upstream Author : Daniel Wilson * URL : http://www.danielwilson.me.uk/omegaMap.html * License : GPL Programming Lang: C, C++ Description : describing

Bug#901742: ITP: changeo -- Repertoire clonal assignment toolkit

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: changeo * URL : http://changeo.readthedocs.io * License : CC BY-SA 4.0 Programming Lang: Python Description : Repertoire clonal assignment toolkit The package is team-maintained on https

Bug#901737: ITP: igor -- infers V(D)J recombination processes from sequencing data

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: igor Version : 1.2.0 * URL : https://github.com/qmarcou/IGoR/ * License : GPL Description : infers V(D)J recombination processes from sequencing data The package is team-maintained on

Bug#901684: ITP: r-cran-shazam -- Immunoglobulin Somatic Hypermutation Analysis

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: r-cran-shazam * URL : Immunoglobulin Somatic Hypermutation Analysis * License : CC BY-SA 4.0 Programming Lang: R Description : Immunoglobulin Somatic Hypermutation Analysis The package is

Bug#901681: ITP: r-cran-sdmtools -- Species Distribution Modelling Tools

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: r-cran-sdmtools * URL : https://cran.r-project.org/package=SDMTools * License : GPL-3+ Programming Lang: R Description : Species Distribution Modelling Tools The package is team-maintained on

Bug#901679: ITP: r-cran-kedd -- Kernel Estimator+Bandwidth Selection - Density+Derivatives

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: r-cran-kedd * URL : https://cran.r-project.org/package=kedd * License : GPL-2+ Programming Lang: R Description : Kernel Estimator+Bandwidth Selection - Density+Derivatives The package is team

Bug#901676: ITP: r-cran-diptest -- Hartigan's Dip Test Statistic for Unimodality - Corrected

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: r-cran-diptest * URL : https://cran.r-project.org/package=diptest * License : GPL-2+ Programming Lang: R Description : Hartigan's Dip Test Statistic for Unimodality - Corrected The packa

Bug#901673: ITP: r-cran-tigger -- Infers new Immunoglobulin alleles from Rep-Seq Data

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: r-cran-tigger * URL : http://tigger.readthedocs.io * License : CC-BY-SA-4.0 Programming Lang: R Description : Infers new Immunoglobulin alleles from Rep-Seq Data The package is team

Bug#901668: ITP: r-cran-alakazam -- Immunoglobulin Clonal Lineage and Diversity Analysis

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: r-cran-alakazam * URL : hhttps://alakazam.readthedocs.io/ * License : CC BY-SA 4.0 Programming Lang: R Description : Immunoglobulin Clonal Lineage and Diversity Analysis The package is about

Bug#901620: ITP: r-cran-tcr -- Advanced Data Analysis of Immune Receptor Repertoires

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: r-cran-tcr Author: : Vadim Nazarov Version : 2.2.1 * URL : https://github.com/imminfo/tcr/ * License : Apache-2.0 Programming Lang: R Description : Advanced Data Analysis

Bug#900532: ITP: estscan -- ORF-independent detector of coding DNA sequences

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: estscan Version : 3.0.3 * URL : http://estscan.sourceforge.net/ * License : non-free custom Programming Lang: C, Fortran Description : ORF-independent detector of coding DNA

Bug#900483: ITP: solvate -- arranges water molecules around protein structures

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: solvate * URL : http://www.mpibpc.mpg.de/grubmueller/solvate * License : custom Programming Lang: C Description : arranges water molecules around protein structures The package is team

Bug#899396: ITP: ghmm -- General Hidden Markov Model library

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: ghmm * URL : http://ghmm.org * License : GPL Programming Lang: C Description : General Hidden Markov Model library The packaging is about to surface on http://salsa.debian.org/med-team/ghmm

Bug#899322: ITP: trace2dbest -- bulk submission of chromatogram data to dbEST

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: trace2dbest Version : 3.0.1 * URL : http://www.nematodes.org/bioinformatics/trace2dbEST/ * License : GPL Programming Lang: Perl Description : bulk submission of chromatogram data to

Bug#898695: ITP: bmx6 -- Mesh Network Routing

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: bmx6 * URL : https://github.com/bmx-routing/bmx6/ * License : GPL Programming Lang: C Description : Mesh Network Routing The package will be team-maintained in a separate branch together with

Bug#898118: ITP: pscan-chip -- ChIP-based identifcation of TF binding sites

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: pscan-chip Version : 1.1 * URL : www.beaconlab.it/pscan_chip_dev/ * License : GPL Programming Lang: C++ Description : ChIP-based identifcation of TF binding sites The package is

Bug#897908: ITP: soapaligner -- aligner of short reads of next generation sequencers

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: soapaligner * URL : http://soap.genomics.org.cn/soapaligner.html * License : GPL Programming Lang: C Description : aligner of short reads of next generation sequencers Package team-maintained

Bug#897903: ITP: soapsnp -- resequencing utility that can assemble consensus sequence of genomes

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: soapsnp * URL : http://soap.genomics.org.cn/soapsnp.html * License : GPL Description : resequencing utility that can assemble consensus sequence of genomes Packaging team-maintained on https

Bug#897441: ITP: amos -- modular whole genome assembler

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: amos Version : 3.1.0 * URL : http://amos.sourceforge.net/ * License : Artistic Description : modular whole genome assembler Package already lives for a while on https

Bug#897037: ITP: grabix -- tool for random access into BGZF files

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: grabix Version : 0.1.6 * URL : https://github.com/arq5x/grabix * License : MIT/X Programming Lang: C++ Description : tool for random access into BGZF files The package is team

Bug#896980: ITP: gemma -- Genome-wide Efficient Mixed Model Association

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: gemma Version : 0.97 * URL : http://www.xzlab.org/software.html * License : GPL-3 Description : Genome-wide Efficient Mixed Model Association The package is team-maintained on

Bug#895740: ITP: fasta3 -- tools for searching collections of biological sequences

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: fasta3 * URL : http://fasta.bioch.virginia.edu * License : apache Description : tools for searching collections of biological sequences The FASTA programs find regions of local or global

Bug#891875: ITP: pluto-find-orb -- Orbit determination from observations

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: pluto-find-orb Upstream Author : Bill J. Gray * URL : https://www.projectpluto.com/find_orb.htm * License : GPL Programming Lang: C++ Description : Orbit determination from observations The

Bug#891874: ITP: pluto-sat-code -- prediction of orbits of earth satellites

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: pluto-sat-code Upstream Author : Bill J. Gray * URL : https://github.com/Bill-Gray/sat_code * License : GPL Programming Lang: C++ Description : prediction of orbits of earth satellites The

Bug#891856: ITP: pluto-lunar -- routines for predictions of positions in solar system

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: pluto-lunar Upstream Author : Bill J. Gray * URL : https://github.com/Bill-Gray/lunar * License : GPL Programming Lang: C++ Description : routines for predictions of positions in solar

Bug#720876: ITP: doxia-1.0 -- 1.0 alpha version of Doxia from codehaus

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: doxia-1.0 Version : 1.0~alpha-6 * URL : http://svn.apache.org/viewvc/maven/doxia/doxia/tags/ Programming Lang: Java Description : 1.0 alpha version of Doxia from codehaus Doxia from

Bug#720347: ITP: jaxb2-maven-plugin -- interlinking XML files with Java Objects from mojo.codehaus.org

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: jaxb2-maven-plugin Version : 1.5 * URL : http://mojo.codehaus.org/jaxb2-maven-plugin * License : Apache-2.0 Programming Lang: Java Description : interlinking XML files with Java

Bug#689163: ITP: edtsurf -- triangulated mesh surfaces for protein structures

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: edtsurf * URL : http://zhanglab.ccmb.med.umich.edu/EDTSurf/ * License : custom, DFSG-free Programming Lang: C++ Description : triangulated mesh surfaces for protein structures EDTSurf is a

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