Maintainer of package joystick may be missing

2007-09-25 Thread laszlo kajan
o be a lot more difficult than I expected. Edward Betts seems to be unavailable for almost two years now, and so there is nobody to apply my - or the other 2 in the queue - patch to the source. I thank you for your kind help in advance. Best regards, Laszlo Kajan -- To UNSUBSCRIBE, email to

Re: Maintainer of package joystick may be missing

2007-09-27 Thread laszlo kajan
Dear Aníbal, I uploaded the button and axis remapping patch against joystick/20051019-1.1. This most recent patch also includes updates for the jscal manpage, documenting the new command line arguments. Thank you for your help. Best regards, Laszlo Kajan Aníbal Monsalve Salazar wrote: >

Bug#659964: ITP: proftmb -- per-residue prediction of bacterial transmembrane beta barrels

2012-02-15 Thread Laszlo Kajan
Package: wnpp Severity: wishlist Owner: Laszlo Kajan * Package name: proftmb Version : 1.1.7 Upstream Author : Henry Bigelow * URL : http://rostlab.org/ * License : GPL Programming Lang: C++ Description : per-residue prediction of bacterial

Bug#660272: ITP: sift -- predict if an amino acid substitution in a protein has phenotypic effect

2012-02-17 Thread Laszlo Kajan
Package: wnpp Severity: wishlist Owner: Laszlo Kajan * Package name: sift Version : 3.0 Upstream Author : Pauline Ng * URL : http://sift-dna.org/ * License : FHCRC NONCOMMERCIAL LICENSE <ftp://ftp.ncbi.nih.gov/repository/blocks/unix/blimps/LICE

Bug#661111: ITP: ffindex -- simple index/database for huge amounts of small files

2012-02-24 Thread Laszlo Kajan
Package: wnpp Severity: wishlist Owner: Laszlo Kajan * Package name: ffindex Version : 0.9.3 Upstream Author : Andreas Hauser * URL : http://pubshare.genzentrum.lmu.de/scientific_computing/software/ffindex/ * License : CC-BY-SA-3.0 Programming Lang: C

Bug#666192: ITP: librostlab -- C++ library from the Rost Lab

2012-03-29 Thread Laszlo Kajan
Package: wnpp Severity: wishlist Owner: Laszlo Kajan * Package name: librostlab Version : 1.0.20 Upstream Author : Laszlo Kajan * URL : http://rostlab.org/ * License : LGPL-3+ Programming Lang: C++ Description : C++ library from the Rost Lab The

Bug#666193: ITP: librostlab-blast -- very fast C++ library for parsing NCBI BLAST output

2012-03-29 Thread Laszlo Kajan
Package: wnpp Severity: wishlist Owner: Laszlo Kajan * Package name: librostlab-blast Version : 1.0.0 Upstream Author : Laszlo Kajan * URL : http://rostlab.org/ * License : LGPL Programming Lang: C, C++ Description : very fast C++ library for parsing

Bug#666194: ITP: librg-blast-parser-perl -- very fast NCBI BLAST parser - binding for perl

2012-03-29 Thread Laszlo Kajan
Package: wnpp Severity: wishlist Owner: Laszlo Kajan * Package name: librg-blast-parser-perl Version : 0.02 Upstream Author : Laszlo Kajan * URL : http://rostlab.org/ * License : Artistic Programming Lang: Perl Description : very fast NCBI BLAST

Bug#669259: ITP: dssp -- protein secondary structure assignment based on 3D structure

2012-04-18 Thread Laszlo Kajan
Package: wnpp Severity: wishlist Owner: Laszlo Kajan * Package name: dssp Version : 2.0.4 Upstream Author : Maarten L. Hekkelman * URL : http://www.cmbi.ru.nl/dssp/ * License : Boost-1.0 Programming Lang: C++ Description : protein secondary structure

Bug#676384: ITP: libsort-key-top-perl -- select and sort top n elements

2012-06-06 Thread Laszlo Kajan
Package: wnpp Severity: wishlist Owner: Laszlo Kajan * Package name: libsort-key-top-perl Version : 0.06 Upstream Author : Salvador Fandiño * URL : http://search.cpan.org/~salva/Sort-Key-Top-0.06/lib/Sort/Key/Top.pm * License : Perl Artistic Programming

Bug#680539: ITP: hmmer2 -- profile hidden Markov models for protein sequence analysis (version 2)

2012-07-06 Thread Laszlo Kajan
Package: wnpp Severity: wishlist Owner: Laszlo Kajan -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 * Package name: hmmer2 Version : 2.3.2 Upstream Author : Sean Eddy * URL : ftp://selab.janelia.org/pub/software/hmmer/ * License : GPL-2+ Programming Lang: C

Bug#723747: ITP: libfreecontact-perl -- fast protein contact predictor - binding for Perl

2013-09-19 Thread Laszlo Kajan
Package: wnpp Severity: wishlist Owner: Laszlo Kajan -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 * Package name: libfreecontact-perl Version : 0.08 Upstream Author : Laszlo Kajan * URL : http://rostlab.org/ * License : GPL-1+ or Artistic Programming Lang

Bug#723771: ITP: python-freecontact -- fast protein contact predictor - binding for Python

2013-09-19 Thread Laszlo Kajan
Package: wnpp Severity: wishlist Owner: Laszlo Kajan -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 * Package name: python-freecontact Version : 1.1 Upstream Author : Laszlo Kajan * URL : http://rostlab.org/ * License : GPL-3+ Programming Lang: C++, Python

Bug#684403: ITP: python-librcsb-core-wrapper -- library that exports C++ mmCIF accessors to Python

2012-08-09 Thread Laszlo Kajan
Package: wnpp Severity: wishlist Owner: Laszlo Kajan -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 * Package name: python-librcsb-core-wrapper Version : 1.000 Upstream Author : Vladimir Guranovic * URL : http://sw-tools.rcsb.org/apps/CORE-WRAPPER/index.html

Bug#689020: ITP: concavity -- predictor of protein ligand binding sites from 3D structure and sequence conservation

2012-09-28 Thread Laszlo Kajan
Package: wnpp Severity: wishlist Owner: Laszlo Kajan -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 * Package name: concavity Version : 0.1 Upstream Author : Thomas Funkhouser , John A. Capra * URL : http://compbio.cs.princeton.edu/concavity/ * License : GPL

Bug#690058: ITP: conservation-code -- tool to score protein sequence conservation

2012-10-09 Thread Laszlo Kajan
Package: wnpp Severity: wishlist Owner: Laszlo Kajan -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 * Package name: conservation-code Version : 20110309.0 Upstream Author : John A. Capra , Mona Singh * URL : http://compbio.cs.princeton.edu/conservation/ * License

Bug#703256: RFH: gridengine -- Distributed resource management

2013-03-17 Thread Laszlo Kajan
Package: wnpp Severity: normal -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Hello! I am Laszlo Kajan, a member of the 'Gridengine packaging' project [1]. This project team-maintains gridengine [2], a distributed resource management system, in Debian. gridengine used to be - well, s

Bug#705537: ITP: metastudent -- predictor of Gene Ontology terms from protein sequence

2013-04-16 Thread Laszlo Kajan
Package: wnpp Severity: wishlist Owner: Laszlo Kajan -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 * Package name: metastudent Version : 1.0.7 Upstream Author : Tobias Hamp * URL : https://rostlab.org/owiki/index.php/Metastudent * License : GPL-2

Question about proper archive area for packages that require big data for operation

2013-04-23 Thread Laszlo Kajan
Dear Russ, Debian Med Team, Charles! (Please keep Tobias Hamp in replies.) @Russ: Please allow me to include you in a discussion about a few bioinformatics packages that depend on big, but free data [2]. I have cited your opinion [3] in this discussion before. You are on the technical committee

Re: [Debian-med-packaging] Question about proper archive area for packages that require big data for operation

2013-04-23 Thread Laszlo Kajan
Hello Andreas! On 23/04/13 12:23, Andreas Tille wrote: > On Tue, Apr 23, 2013 at 11:48:05AM +0200, Laszlo Kajan wrote: >> >> This email is to continue the discussion about free packages that depend on >> big (e.g. >400MB) free data outside 'main'. > >

Re: [Debian-med-packaging] Question about proper archive area for packages that require big data for operation

2013-04-23 Thread Laszlo Kajan
Hello Benjamin! On 23/04/13 15:13, Benjamin Drung wrote: > Am Dienstag, den 23.04.2013, 13:51 +0200 schrieb Laszlo Kajan: >> Hello Andreas! >> >> On 23/04/13 12:23, Andreas Tille wrote: >>> On Tue, Apr 23, 2013 at 11:48:05AM +0200, Laszlo Kajan wrote: >>&

Re: [Debian-med-packaging] Question about proper archive area for packages that require big data for operation

2013-04-23 Thread Laszlo Kajan
Dear Russ! Thank you for getting back to me. On 23/04/13 18:48, Russ Allbery wrote: > Laszlo Kajan writes: > >> This email is to continue the discussion about free packages that depend >> on big (e.g. >400MB) free data outside 'main'. These packages apparently

Re: [Debian-med-packaging] Question about proper archive area for packages that require big data for operation

2013-04-24 Thread Laszlo Kajan
Hi Olivier! On 24/04/13 08:20, Olivier Sallou wrote: > > On 04/23/2013 11:48 AM, Laszlo Kajan wrote: >> Dear Russ, Debian Med Team, Charles! >> >> (Please keep Tobias Hamp in replies.) >> >> @Russ: Please allow me to include you in a discussion about a few &g

Re: [Debian-med-packaging] Question about proper archive area for packages that require big data for operation

2013-04-24 Thread Laszlo Kajan
Hello Didier! On 24/04/13 09:32, Didier 'OdyX' Raboud wrote: > Le mardi, 23 avril 2013 12.23:23, Andreas Tille a écrit : >> I would even go that far that it might make sense to package these data >> and upload it to demonstrate that we should *really* create a solution >> for such cases if they wi

Re: Re: Question about proper archive area for packages that require big data for operation

2013-04-24 Thread Laszlo Kajan
Hello Simon! Thank you for these suggestions. On 24/04/13 13:06, Simon McVittie wrote: > On 23/04/13 10:48, Laszlo Kajan wrote: >> free packages that depend on big (e.g. >400MB) free data outside 'main' > > This comes up in the Games Team, too. > > Here ar

Re: [Debian-med-packaging] Question about proper archive area for packages that require big data for operation

2013-04-26 Thread Laszlo Kajan
Dear FTP Masters! On 23/04/13 15:13, Benjamin Drung wrote: [...] > You can use xz for the source and binary package to reduce the size. The > default compression level for xz reduces the size of the source tarball > from 415 MB to 272 MB: > > $ ls -1s --si metastudent-data_1.0.0.tar* > 823M metas

Re: [Debian-med-packaging] Question about proper archive area for packages that require big data for operation

2013-04-27 Thread Laszlo Kajan
Dear Ben! On 27/04/13 00:46, Ben Hutchings wrote: > On Fri, Apr 26, 2013 at 03:21:43PM +0200, Laszlo Kajan wrote: >> Dear FTP Masters! >> >> On 23/04/13 15:13, Benjamin Drung wrote: >> [...] >>> You can use xz for the source and binary package to reduce the siz

Bug#641581: ITP: libzerg -- C library for parsing the output of NCBI BLAST programs

2011-09-14 Thread Laszlo Kajan
Package: wnpp Severity: wishlist Owner: Laszlo Kajan * Package name: libzerg Version : 1.0.7 Upstream Author : Apua C.M. Paquola * URL : http://code.google.com/p/libzerg/ * License : GNU GPL v2 Programming Lang: C Description : C library for parsing

Bug#641799: ITP: libzerg-perl -- fast perl module for parsing the output of NCBI BLAST programs

2011-09-16 Thread Laszlo Kajan
Package: wnpp Severity: wishlist Owner: Laszlo Kajan * Package name: libzerg-perl Version : 1.0.4 Upstream Author : Apuã Paquola * URL : http://code.google.com/p/libzerg/ * License : GPL Programming Lang: Perl Description : fast perl module for

Bug#643323: ITP: profphd-utils -- profphd helper utilities convert_seq and filter_hssp

2011-09-27 Thread Laszlo Kajan
Package: wnpp Severity: wishlist Owner: Laszlo Kajan * Package name: profphd-utils Version : 1.0.7 Upstream Author : Laszlo Kajan * URL : http://rostlab.org/ * License : GPL Programming Lang: Fortran Description : profphd helper utilities convert_seq

Bug#643324: ITP: profphd -- secondary structure and solvent accessibility predictor

2011-09-27 Thread Laszlo Kajan
Package: wnpp Severity: wishlist Owner: Laszlo Kajan * Package name: profphd Version : 1.0.35 Upstream Author : Laszlo Kajan * URL : http://rostlab.org/ * License : GPL Programming Lang: Perl Description : secondary structure and solvent

Bug#643630: ITP: librg-utils-perl -- parsers and format conversion utilities used by (e.g.) profphd

2011-09-28 Thread Laszlo Kajan
Package: wnpp Severity: wishlist Owner: Laszlo Kajan * Package name: librg-utils-perl Version : 1.0.41 Upstream Author : Burkhard Rost * URL : http://www.rostlab.org/ * License : GPL Programming Lang: Perl Description : parsers and format conversion

Bug#643669: ITP: pp-popularity-contest -- PredictProtein popularity contest

2011-09-28 Thread Laszlo Kajan
Package: wnpp Severity: wishlist Owner: Laszlo Kajan * Package name: pp-popularity-contest Version : 1.0.3 Upstream Author : Laszlo Kajan * URL : http://www.rostlab.org/ * License : GPL Programming Lang: C++ Description : PredictProtein popularity

Bug#649995: ITP: libai-fann-perl -- Perl wrapper for the FANN library

2011-11-25 Thread Laszlo Kajan
Package: wnpp Severity: wishlist Owner: Laszlo Kajan * Package name: libai-fann-perl Version : 0.10 Upstream Author : Salvador Fandino * URL : http://fann.sf.net/ * License : Perl Artistic License Programming Lang: C, C++, Perl Description : Perl

Bug#655336: ITP: reprof -- protein secondary structure and accessibility predictor

2012-01-10 Thread Laszlo Kajan
Package: wnpp Severity: wishlist Owner: Laszlo Kajan * Package name: reprof Version : 1.0.0 Upstream Author : Peter Hoenigschmid * URL : http://rostlab.org/ * License : GPL Programming Lang: Perl Description : protein secondary structure and

Bug#656626: ITP: hhsuite -- sensitive protein sequence searching based on HMM-HMM alignment

2012-01-20 Thread Laszlo Kajan
Package: wnpp Severity: wishlist Owner: Laszlo Kajan * Package name: hhsuite Version : 2.0.4 Upstream Author : Johannes Soeding, Michael Remmert, Andreas Hauser , Andreas Biegert * URL : http://toolkit.genzentrum.lmu.de/sections/search * License : GPLv3

Bug#657897: ITP: blimps -- FHCRC BLocks IMProved Searcher

2012-01-29 Thread Laszlo Kajan
Package: wnpp Severity: wishlist Owner: Laszlo Kajan * Package name: blimps Version : 3.9 Upstream Author : Jorja Henikoff * URL : ftp://ftp.ncbi.nih.gov/repository/blocks/unix/blimps/ * License : FHCRC NONCOMMERCIAL LICENSE <ftp://ftp.ncbi.nih.