Accepted gnumed-server 20.2-1 (source all) into experimental

...@lists.alioth.debian.org Changed-By: Andreas Tille ti...@debian.org Description: gnumed-server - medical practice management - server Changes: gnumed-server (20.2-1) experimental; urgency=medium . * New upstream version * Adapt README.Debian to new major release Checksums-Sha1

Accepted gnumed-client 1.5.2+dfsg-1 (source all) into experimental

Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Andreas Tille ti...@debian.org Description: gnumed-client - medical practice management - Client gnumed-client-de - medical practice management - Client for German users gnumed-common - medical practice management - common

Bug#776655: ITP: rna-star -- ultrafast universal RNA-seq aligner

Package: wnpp Severity: wishlist Owner: Andreas Tille ti...@debian.org * Package name: rna-star Version : 2.4.0i Upstream Author : Alexander Dobin do...@cshl.edu * URL : https://github.com/alexdobin/STAR * License : MIT Programming Lang: C++ Description

Accepted sphinxcontrib-autoprogram 0.1.1-1 (source all) into unstable, unstable

-packag...@lists.alioth.debian.org Changed-By: Andreas Tille ti...@debian.org Description: sphinxcontrib-autoprogram - automated documentation of CLI programs for Sphinx Closes: 776737 Changes: sphinxcontrib-autoprogram (0.1.1-1) unstable; urgency=medium . * Initial upload to Debian (Closes

Accepted edfbrowser 1.55-3 (source amd64) into experimental

...@lists.alioth.debian.org Changed-By: Andreas Tille ti...@debian.org Description: edfbrowser - viewer for biosignal storage files such as bdf and edf Changes: edfbrowser (1.55-3) experimental; urgency=medium . * New upstream version (upstream applied all patches) Checksums-Sha1

Bug#775820: ITP: vsearch -- tool for processing metagenomic sequences

Package: wnpp Severity: wishlist Owner: Andreas Tille ti...@debian.org * Package name: vsearch Version : 1.0.7 Upstream Author : Torbjørn Rognes * URL : https://github.com/torognes/vsearch/ * License : Affero-GPL-3 Programming Lang: C Description : tool

Bug#775861: ITP: swarm-cluster -- robust and fast clustering method for amplicon-based studies

Package: wnpp Severity: wishlist Owner: Andreas Tille ti...@debian.org * Package name: swarm-cluster Version : 1.2.19 Upstream Author : Torbjørn Rognes torog...@ifi.uio.no * URL : https://github.com/torognes/swarm * License : Affero-GPL-3 Programming Lang: C

Re: Unauthorised activity surrounding tbb package

On Fri, Jan 16, 2015 at 04:48:33PM +, Steven Capper wrote: Mathieu, I'm writing to express my increasing frustration at activities you've instigated surrounding the tbb package that I maintain. Over the Christmas period a bug report was raised: #773359 package tbb_4.2~20140122-4 FTBFS

Re: Unauthorised activity surrounding tbb package

On Sun, Jan 18, 2015 at 01:07:35PM +, Mark Brown wrote: On Sun, Jan 18, 2015 at 10:09:34AM +0100, Andreas Tille wrote: On Fri, Jan 16, 2015 at 04:48:33PM +, Steven Capper wrote: we have had no discussion over #773359; your response is effectively placing words in my mouth

Accepted gnumed-server 19.15-1 (source all) into unstable

...@lists.alioth.debian.org Changed-By: Andreas Tille ti...@debian.org Description: gnumed-server - medical practice management - server Changes: gnumed-server (19.15-1) unstable; urgency=medium . * New maintenance release for GNUmed server v19 series Checksums-Sha1: daaf0f80c7895fb9826e53e00a5fc766ad927368

Accepted gnumed-client 1.4.15+dfsg-1 (source all) into unstable

Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Andreas Tille ti...@debian.org Description: gnumed-client - medical practice management - Client gnumed-client-de - medical practice management - Client for German users gnumed-common - medical practice management - common

Accepted librcsb-core-wrapper 1.005-3 (source amd64 all) into unstable

amd64 all Version: 1.005-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Andreas Tille ti...@debian.org Description: librcsb-core-wrapper-doc - documentation for librcsb-core-wrapper0 librcsb-core-wrapper0 - C

Re: conflicts between Debian's and upstream's Debian package

Hi Harald, On Fri, Feb 20, 2015 at 09:04:56AM +0100, Harald Dunkel wrote: I would like to use upstream's Debian/Ubuntu packages for a certain tool 'foo'. Its closer to what I need, and I don't have migrate between both versions before asking the mailing list for help or for

Bug#778832: ITP: stacks -- pipeline for building loci from short-read DNA sequences

Package: wnpp Severity: wishlist Owner: Andreas Tille ti...@debian.org * Package name: stacks Version : 1.25 Upstream Author : Julian Catchen jcatc...@uoregon.edu * URL : http://creskolab.uoregon.edu/stacks/ * License : GPL Programming Lang: C++ Description

Bug#778838: ITP: seqprep -- stripping adaptors and/or merging paired reads of DNA sequences with overlap

Package: wnpp Severity: wishlist Owner: Andreas Tille ti...@debian.org * Package name: seqprep Version : 1.1 Upstream Author : John St. John jstj...@soe.ucsc.edu * URL : http://seqanswers.com/wiki/SeqPrep * License : MIT Programming Lang: C Description

Re: conflicts between Debian's and upstream's Debian package

Hi, On Fri, Feb 20, 2015 at 01:09:20PM +0100, Daniel Leidert wrote: ... These are the ways, I would try. While this perfectly answers to question of the original poster it is hiding a potential problem inside a (currently unknown) Debian package. Harald, in case you follow this hint, please

Accepted libgpars-groovy-java 1.2.1-1 (source all) into unstable

pkg-java-maintain...@lists.alioth.debian.org Changed-By: Andreas Tille ti...@debian.org Description: libgpars-groovy-java - open-source concurrency library for Groovy libgpars-groovy-java-doc - documentation for libgpars-groovy-java Closes: 733098 778690 Changes: libgpars-groovy-java (1.2.1-1

Accepted vsearch 1.0.16+dfsg-1 (source amd64 all) into unstable

...@lists.alioth.debian.org Changed-By: Andreas Tille ti...@debian.org Description: vsearch- tool for processing metagenomic sequences vsearch-data - example data for vsearch tool for processing metagenomic sequence Closes: 778748 Changes: vsearch (1.0.16+dfsg-1) unstable; urgency=medium

Accepted bwa 0.7.12-1 (source amd64) into experimental

Changed-By: Andreas Tille ti...@debian.org Description: bwa- Burrows-Wheeler Aligner Changes: bwa (0.7.12-1) experimental; urgency=medium . * New upstream version * simplified watch file * cme fix dpkg-control Checksums-Sha1: cee5ac350147627663867c136d5cc4e237471fb4 2013 bwa_0.7.12

Bug#776678: ITP: python-screed -- short nucleotide read sequence utils in Python

Package: wnpp Severity: wishlist Owner: Andreas Tille ti...@debian.org * Package name: python-screed Version : 0.7.1 Upstream Author : Michael R. Crusoe michael.cru...@gmail.com * URL : https://screed.readthedocs.org * License : BSD-3-Clause Programming Lang

Bug#776709: ITP: toppred -- transmembrane topology prediction

Package: wnpp Severity: wishlist Owner: Andreas Tille ti...@debian.org * Package name: toppred Version : 1.10 Upstream Author : Eric Deveaud edeve...@pasteur.fr * URL : https://github.com/bioinfo-center-pasteur-fr/toppred * License : GPL Programming Lang: C

Accepted rna-star 2.4.0i-1 (source amd64) into unstable, unstable

Changed-By: Andreas Tille ti...@debian.org Description: rna-star - ultrafast universal RNA-seq aligner Closes: 776655 Changes: rna-star (2.4.0i-1) unstable; urgency=low . * Initial release (Closes: #776655) Checksums-Sha1: aa032d264077beccbd3e7d5706ff949c031dca22 2024 rna-star_2.4.0i-1.dsc

Accepted swarm-cluster 1.2.19+dfsg-1 (source amd64) into unstable, unstable

...@lists.alioth.debian.org Changed-By: Andreas Tille ti...@debian.org Description: swarm - robust and fast clustering method for amplicon-based studies Closes: 775861 Changes: swarm-cluster (1.2.19+dfsg-1) unstable; urgency=medium . * Initial Debian release Closes: #775861 Checksums-Sha1

Accepted gnumed-client 1.4.14+dfsg-1 (source all) into unstable

Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Andreas Tille ti...@debian.org Description: gnumed-client - medical practice management - Client gnumed-client-de - medical practice management - Client for German users gnumed-common - medical practice management - common

Accepted gnumed-server 19.14-1 (source all) into unstable

...@lists.alioth.debian.org Changed-By: Andreas Tille ti...@debian.org Description: gnumed-server - medical practice management - server Changes: gnumed-server (19.14-1) unstable; urgency=medium . * New maintenance release for GNUmed server v19 series * debian/watch: Stick to the v19 series of GNUmed server

Bug#776737: ITP: sphinxcontrib-autoprogram -- automated documentation of CLI programs for Sphinx

Package: wnpp Severity: wishlist Owner: Andreas Tille ti...@debian.org * Package name: sphinxcontrib-autoprogram Version : 0.1.1 Upstream Author : Hong Minhee @hongminhee.org * URL : https://pythonhosted.org/sphinxcontrib-autoprogram/ * License : BSD

Accepted vsearch 1.0.7+dfsg-1 (source amd64 all) into unstable, unstable

...@lists.alioth.debian.org Changed-By: Andreas Tille ti...@debian.org Description: vsearch- tool for processing metagenomic sequences vsearch-data - example data for vsearch tool for processing metagenomic sequence Closes: 775820 Changes: vsearch (1.0.7+dfsg-1) unstable; urgency=medium

Accepted plink 1.07-5 (source amd64) into experimental

Changed-By: Andreas Tille ti...@debian.org Description: plink - whole-genome association analysis toolset Changes: plink (1.07-5) experimental; urgency=medium . * Also create a manpage in Debian Med name space Checksums-Sha1: 04446db7822cfec06c01a80d25ed1932bf055980 2057 plink_1.07-5.dsc

Re: Bug#777220: ITP: you-get -- downloader for youtube and number of sites

Hi, On Fri, Feb 06, 2015 at 04:42:15PM +0100, Jonas Smedegaard wrote: I locate these (grouped by core engine, not all CLI-based): ytdl, mps-youtube (via python-pafy) quvi, nomnom, cclive, mplayer2 and more (via libquvi*) groovebasin (via node-ytdl-core) youtube-dl, mpv (via youtube-dl)

Accepted gnumed-client 1.5.3+dfsg-1 (source all) into experimental

Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Andreas Tille ti...@debian.org Description: gnumed-client - medical practice management - Client gnumed-client-de - medical practice management - Client for German users gnumed-common - medical practice management - common

Accepted gnumed-server 20.3-1 (source all) into experimental

...@lists.alioth.debian.org Changed-By: Andreas Tille ti...@debian.org Description: gnumed-server - medical practice management - server Changes: gnumed-server (20.3-1) experimental; urgency=medium . * New upstream version * debian/config: Update config files according to upstream Checksums-Sha1

Accepted vsearch 1.0.14+dfsg-1 (source amd64 all) into unstable

...@lists.alioth.debian.org Changed-By: Andreas Tille ti...@debian.org Description: vsearch- tool for processing metagenomic sequences vsearch-data - example data for vsearch tool for processing metagenomic sequence Closes: 776812 776814 776815 Changes: vsearch (1.0.14+dfsg-1) unstable; urgency

Accepted kissplice 2.2.1-3 (source amd64) into unstable

...@lists.alioth.debian.org Changed-By: Andreas Tille ti...@debian.org Description: kissplice - Detection of various kinds of polymorphisms in RNA-seq data Closes: 780473 Changes: kissplice (2.2.1-3) unstable; urgency=medium . * Architecture attribute in a single line Closes: #780473 Checksums-Sha1

Accepted mapsembler2 2.2.3+dfsg-2 (source amd64) into unstable

...@lists.alioth.debian.org Changed-By: Andreas Tille ti...@debian.org Description: mapsembler2 - bioinformatics targeted assembly software Closes: 766791 Changes: mapsembler2 (2.2.3+dfsg-2) unstable; urgency=medium . * Some DEP5 fixes * Fix clean target Closes: #766791 * cme fix dpkg-control

Bug#780682: ITP: python-ruffus -- Python computation pipeline library widely used in bioinformatics

Package: wnpp Severity: wishlist Owner: Andreas Tille ti...@debian.org * Package name: python-ruffus Version : 2.6.2 Upstream Author : Leo Goodstadt ruffus_...@llew.org.uk * URL : https://pypi.python.org/pypi/ruffus * License : MIT Programming Lang: Python

Accepted libzeep 3.0.2-2 (source amd64) into unstable

...@lists.alioth.debian.org Changed-By: Andreas Tille ti...@debian.org Description: libzeep-dev - Development files for libzeep libzeep3.0 - Library files for libzeep Closes: 773339 Changes: libzeep (3.0.2-2) unstable; urgency=medium . * Add myself as Uploader * debhelper 9 * cme fix dpkg-control

Accepted rdp-readseq 2.0.2-1 (source all) into unstable, unstable

...@lists.alioth.debian.org Changed-By: Andreas Tille ti...@debian.org Description: rdp-readseq - Ribosomal Database Project (RDP) sequence reading and writing Closes: 779315 Changes: rdp-readseq (2.0.2-1) unstable; urgency=medium . * Initial upload to Debian Closes: #779315 Checksums-Sha1

Re: Gitorious; check-all-the-things (was: Re: Misc Developer News (#38))

On Tue, Mar 10, 2015 at 10:07:38PM +0800, Paul Wise wrote: On Tue, Mar 10, 2015 at 8:37 PM, Dominique Dumont wrote: I've also worked on a way to improve licensecheck2dep5 (without knowing about license-reconcile). It might be interesting to consolidate these three tools or choose the

Bug#780310: ITP: rdp-alignment -- Ribosomal Database Project (RDP) alignment tools package

Package: wnpp Severity: wishlist Owner: Andreas Tille ti...@debian.org * Package name: rdp-alignment Version : 1.2.0-1 Upstream Author : Michigan State University rdpst...@msu.edu * URL : https://github.com/rdpstaff/AlignmentTools * License : GPL Programming

Accepted debian-med 2.0 (source all) into unstable

-psychology med-rehabilitation med-statistics med-tools med-typesetting Architecture: source all Version: 2.0 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Andreas Tille ti...@debian.org Description: med-bio

Accepted libcolt-free-java 1.2.0+dfsg-3 (source all) into unstable, unstable

debian-med-packag...@lists.alioth.debian.org Changed-By: Andreas Tille ti...@debian.org Description: libcolt-free-java - scalable scientific and technical computing in Java libcolt-free-java-doc - scalable scientific and technical computing in Java (doc) Changes: libcolt-free-java (1.2.0+dfsg-3

Changing the ACL policy for alioth projects (Was: Unable to push debian-jr changes)

Hi, since I have cared for ACLs set on all projects I have admin permissions I always (obviously wrongly - see[1]) assume that people do so as well in their projects. I experienced the same issue yesterday in pkg-openstack: The fact that there is a way to grant commit permissions to any DD to

Accepted debian-gis 0.0.4 (source all) into unstable

Urgency: medium Maintainer: Debian GIS Project pkg-grass-de...@lists.alioth.debian.org Changed-By: Andreas Tille ti...@debian.org Description: gis-data - Debian GIS data gis-devel - Geographic Information Systems (GIS) development gis-gps- GPS related programs gis-osm- OpenStreetMap related

Re: Changing the ACL policy for alioth projects (Was: Unable to push debian-jr changes)

On Tue, Mar 31, 2015 at 08:07:36AM +0100, Neil Williams wrote: On Tue, 31 Mar 2015 08:30:34 +0200 Andreas Tille andr...@an3as.eu wrote: Hi, since I have cared for ACLs set on all projects I have admin permissions I always (obviously wrongly - see[1]) assume that people do so as well

Accepted debian-science 1.4 (source all) into unstable

debian-science-maintain...@lists.alioth.debian.org Changed-By: Andreas Tille ti...@debian.org Description: science-astronomy - Debian Science Astronomy packages science-astronomy-dev - Debian Science Astronomy-dev packages science-biology - Debian Science Biology packages science-chemistry

Accepted debian-junior 1.24 (source all) into unstable

-maintain...@lists.alioth.debian.org Changed-By: Andreas Tille ti...@debian.org Description: junior-art - Debian Jr. Art junior-config - Debian Jr. Project common package junior-education - Debian Jr. education applications junior-games-adventure - Debian Jr. Adventure Games junior-games-arcade

Accepted edflib 1.11-1 (source amd64) into experimental

...@lists.alioth.debian.org Changed-By: Andreas Tille ti...@debian.org Description: libedf-dev - European Data Format library - devel libedf1- European Data Format library - libs Changes: edflib (1.11-1) experimental; urgency=medium . * New upstream version * Added myself to Uploaders * cme fix

Bug#779567: ITP: librdp-taxonomy-tree-java -- taxonomy tree library from Ribosomal Database Project (RDP)

Package: wnpp Severity: wishlist Owner: Andreas Tille ti...@debian.org * Package name: librdp-taxonomy-tree-java Version : 1.2.0 Upstream Author : rdpst...@msu.edu * URL : https://github.com/rdpstaff/TaxonomyTree * License : GPL Programming Lang: Java

Accepted trimmomatic 0.32+dfsg-4 (source all) into unstable

...@lists.alioth.debian.org Changed-By: Andreas Tille ti...@debian.org Description: trimmomatic - flexible read trimming tool for Illumina NGS data Changes: trimmomatic (0.32+dfsg-4) unstable; urgency=medium . * Also adjust manpage to make sure users will be properly informed about the adapter location

Accepted trimmomatic 0.32+dfsg-3 (source all) into unstable

...@lists.alioth.debian.org Changed-By: Andreas Tille ti...@debian.org Description: trimmomatic - flexible read trimming tool for Illumina NGS data Closes: 779296 Changes: trimmomatic (0.32+dfsg-3) unstable; urgency=medium . * Install adapter files and document their usage in d/README.Debian Closes

Accepted mafft 7.215-1 (source amd64) into experimental

Changed-By: Andreas Tille ti...@debian.org Description: mafft - Multiple alignment program for amino acid or nucleotide sequences Changes: mafft (7.215-1) experimental; urgency=medium . * Upload to experimental Checksums-Sha1: 07f4f246e4a85788136a9c3a56308e7b0f1290c8 1974 mafft_7.215-1

Bug#779315: ITP: librdp-readseq-java -- Ribosomal Database Project (RDP) sequence reading and writing library

Package: wnpp Severity: wishlist Owner: Andreas Tille ti...@debian.org * Package name: librdp-readseq-java Version : 2.0.1 Upstream Author : Qiong Wang wangq...@msu.edu * URL : https://github.com/rdpstaff/ReadSeq * License : GPL Programming Lang: Java

Re: conflicts between Debian's and upstream's Debian package

Hi Marc, while your argument is true and known we have no idea what Harald really means and thus we are wasting time in wild speculations. :-( Kind regards Andreas. On Fri, Feb 20, 2015 at 10:15:41PM +0100, Marc Haber wrote: On Fri, 20 Feb 2015 09:50:13 +0100, Andreas Tille andr

Re: conflicts between Debian's and upstream's Debian package

Hi Harald, On Fri, Feb 20, 2015 at 03:25:32PM +0100, Harald Dunkel wrote: Just to understand your problem: there is a package foo. Debian provides it with version 1:A-B and upstream provides some self-compiled packages with the same name under version C-D (and C-D 1:A-B) and you want to

Accepted yaml-cpp 0.5.1+hg20150210-1 (source amd64) into experimental

Changed-By: Andreas Tille ti...@debian.org Description: libyaml-cpp-dev - YAML parser and emitter for C++ - development files libyaml-cpp0.5 - YAML parser and emitter for C++ Changes: yaml-cpp (0.5.1+hg20150210-1) experimental; urgency=medium . [ Andreas Tille ] * Import latest upstream

Accepted vsearch 1.1.1+dfsg-1 (source amd64 all) into unstable

...@lists.alioth.debian.org Changed-By: Andreas Tille ti...@debian.org Description: vsearch- tool for processing metagenomic sequences vsearch-data - example data for vsearch tool for processing metagenomic sequence Closes: 776813 Changes: vsearch (1.1.1+dfsg-1) unstable; urgency=medium

Re: conflicts between Debian's and upstream's Debian package

On Tue, Feb 24, 2015 at 05:10:40PM +, Ian Jackson wrote: Jonathan Dowland writes (Re: conflicts between Debian's and upstream's Debian package): The bad packages Harald is talking about, I think, are external to Debian — I don't think he's trying to protect a DD here. So this is

Accepted dnaclust 3-3 (source amd64) into unstable

Changed-By: Andreas Tille ti...@debian.org Description: dnaclust - tool for clustering millions of short DNA sequences Changes: dnaclust (3-3) unstable; urgency=medium . * Fix Vcs fields * Moved debian/upstream to debian/upstream/metadata Checksums-Sha1

Bug#783045: ITP: r-cran-seroincidence -- GNU R seroincidence calculator tool

Package: wnpp Severity: wishlist Owner: Andreas Tille ti...@debian.org * Package name: r-cran-seroincidence Version : 1.0.3 Upstream Author : Chantal Quinten seroincide...@ecdc.europa.eu * URL : http://ecdc.europa.eu/en/data-tools/seroincidence-calculator-tool/Pages

Accepted r-cran-msm 1.5-1 (source amd64) into unstable

...@lists.alioth.debian.org Changed-By: Andreas Tille ti...@debian.org Description: r-cran-msm - GNU R Multi-state Markov and hidden Markov models in continuous t Changes: r-cran-msm (1.5-1) unstable; urgency=medium . * New upstream version * cme fix dpkg-control Checksums-Sha1

Bug#783415: ITP: libzeus-jscl-java -- Zeus Java Swing Components Library

Package: wnpp Severity: wishlist Owner: Andreas Tille ti...@debian.org * Package name: libzeus-jscl-java Version : 1.72-1 Upstream Author : Gregory Kotsaftis gregkotsaf...@yahoo.com * URL : http://sourceforge.net/projects/zeus-jscl * License : LGPL

Bug#782968: ITP: libmuscle -- multiple alignment library for protein sequences

Package: wnpp Severity: wishlist Owner: Andreas Tille ti...@debian.org * Package name: libmuscle Version : 3.7 Upstream Author : Aaron Darling darl...@cs.wisc.edu * URL : http://sourceforge.net/p/mauve/code/HEAD/tree/muscle/ * License : Public domain

Bug#782969: ITP: libmems -- library to support DNA string matching and comparative genomics

Package: wnpp Severity: wishlist Owner: Andreas Tille ti...@debian.org * Package name: libmems Version : 1.6 Upstream Author : Aaron Darling darl...@cs.wisc.edu * URL : http://sourceforge.net/p/mauve/code/HEAD/tree/libMems/trunk/ * License : GPL Programming

Bug#783101: ITP: mauvealigner -- multiple genome alignment algorithms

Package: wnpp Severity: wishlist Owner: Andreas Tille ti...@debian.org * Package name: mauvealigner Version : 1.2.0+4713 Upstream Author : Aaron Darling darl...@cs.wisc.edu * URL : http://sourceforge.net/p/mauve/code/HEAD/tree/mauveAligner/ * License : GPL

Accepted libfastutil-java 7.0.2-1 (source all) into unstable

-maintain...@lists.alioth.debian.org Changed-By: Andreas Tille ti...@debian.org Description: libfastutil-java - Java API providing type-specific maps, sets, lists and queues libfastutil-java-doc - API documentation for libfastutil-java Changes: libfastutil-java (7.0.2-1) unstable; urgency=medium

Re: Join the #newinjessie game

Hi Michael, I'm repeating what I did with the #newinwheezy game for the wheezy release[1] now for the Debian/jessie release (jey!). According to UDD we've 4841 new source packages in Debian/jessie[2]. A list of the source packages expanded with maintainer names is available at well[3].

Accepted amide 1.0.5-3 (source amd64) into unstable

Changed-By: Andreas Tille ti...@debian.org Description: amide - software for Medical Imaging Closes: 779706 Changes: amide (1.0.5-3) unstable; urgency=medium . * Enhanced description Closes: #779706 Checksums-Sha1: 7e7edfe18163f20de34976cb199d95a54ecb1ef4 2227 amide_1.0.5-3.dsc

Re: Stetch goal: improvements to testing-proposed-updates / experimental?

On Wed, Apr 29, 2015 at 09:02:58AM +0200, Joerg Jaspert wrote: - during the freeze, uploads to unstable that bump sonames should be held for RM review (or that will otherwise prevent new uploads of other packages to unstable from being suitable for promotion to testing) The soname

Bug#784539: ITP: python-matplotlib-venn -- plotting area-proportional two- and three-way Venn diagrams in matplotlib

Package: wnpp Severity: wishlist Owner: Andreas Tille ti...@debian.org * Package name: python-matplotlib-venn Version : 0.11 Upstream Author : Konstantin Tretyakov k...@ut.ee * URL : https://pypi.python.org/pypi/matplotlib-venn * License : MIT Programming

Accepted gnumed-client 1.5.5+dfsg-1 (source all) into unstable

Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Andreas Tille ti...@debian.org Description: gnumed-client - medical practice management - Client gnumed-client-de - medical practice management - Client for German users gnumed-common - medical practice management - common files

Accepted gnumed-server 20.5-1 (source all) into unstable

...@lists.alioth.debian.org Changed-By: Andreas Tille ti...@debian.org Description: gnumed-server - medical practice management - server Changes: gnumed-server (20.5-1) unstable; urgency=medium . * New upstream version Checksums-Sha1: 447140c904b12d6f52afb351920b554ed47b064a 2069 gnumed-server_20.5-1.dsc

Accepted r-bioc-genomicranges 1.20.3-1 (source amd64) into unstable

...@lists.alioth.debian.org Changed-By: Andreas Tille ti...@debian.org Description: r-bioc-genomicranges - BioConductor representation and manipulation of genomic intervals Changes: r-bioc-genomicranges (1.20.3-1) unstable; urgency=medium . * New upstream version Checksums-Sha1

Accepted r-bioc-biomart 2.24.0-1 (source all) into unstable

...@lists.alioth.debian.org Changed-By: Andreas Tille ti...@debian.org Description: r-bioc-biomart - GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase a Changes: r-bioc-biomart (2.24.0-1) unstable; urgency=medium . * New upstream version Checksums-Sha1

Accepted r-bioc-rsamtools 1.20.1-1 (source amd64) into unstable

...@lists.alioth.debian.org Changed-By: Andreas Tille ti...@debian.org Description: r-bioc-rsamtools - GNU R binary alignment (BAM), variant call (BCF), or tabix file i Changes: r-bioc-rsamtools (1.20.1-1) unstable; urgency=medium . * New upstream version * Activate autopkgtest Checksums-Sha1

Accepted r-bioc-biocinstaller 1.18.1-1 (source all) into unstable

...@lists.alioth.debian.org Changed-By: Andreas Tille ti...@debian.org Description: r-bioc-biocinstaller - Install/Update Bioconductor and CRAN Packages Changes: r-bioc-biocinstaller (1.18.1-1) unstable; urgency=medium . * New upstream version Checksums-Sha1

Accepted r-bioc-affy 1.46.0-1 (source amd64) into unstable

...@lists.alioth.debian.org Changed-By: Andreas Tille ti...@debian.org Description: r-bioc-affy - BioConductor methods for Affymetrix Oligonucleotide Arrays Changes: r-bioc-affy (1.46.0-1) unstable; urgency=medium . * New upstream version Checksums-Sha1: 2a068cdd5432ab4add43eeebe02ac3c8455d199e 2178 r-bioc

Accepted r-bioc-biostrings 2.36.1-1 (source amd64) into unstable

...@lists.alioth.debian.org Changed-By: Andreas Tille ti...@debian.org Description: r-bioc-biostrings - GNU R string objects representing biological sequences Changes: r-bioc-biostrings (2.36.1-1) unstable; urgency=medium . * New upstream version Checksums-Sha1

Bug#784872: ITP: r-cran-futile.options -- GNU R futile options management

Package: wnpp Severity: wishlist Owner: Andreas Tille ti...@debian.org * Package name: r-cran-futile.options Version : 1.0.0 Upstream Author : Brian Lee Yung Rowe r...@zatonovo.com * URL : http://cran.r-project.org/web/packages/futile.options/ * License : LGPL

Accepted r-bioc-snpstats 1.18.0+dfsg-1 (source amd64) into unstable

...@lists.alioth.debian.org Changed-By: Andreas Tille ti...@debian.org Description: r-bioc-snpstats - BioConductor SnpMatrix and XSnpMatrix classes and methods Changes: r-bioc-snpstats (1.18.0+dfsg-1) unstable; urgency=medium . * New upstream version * Exclude tests needing not packaged CRAN

Accepted r-bioc-preprocesscore 1.30.0-1 (source amd64) into unstable

-packag...@lists.alioth.debian.org Changed-By: Andreas Tille ti...@debian.org Description: r-bioc-preprocesscore - BioConductor collection of pre-processing functions Changes: r-bioc-preprocesscore (1.30.0-1) unstable; urgency=medium . * New upstream version Checksums-Sha1

Accepted r-bioc-genomeinfodb 1.4.0-1 (source all) into unstable

...@lists.alioth.debian.org Changed-By: Andreas Tille ti...@debian.org Description: r-bioc-genomeinfodb - BioConductor utilities for manipulating chromosome identifiers Changes: r-bioc-genomeinfodb (1.4.0-1) unstable; urgency=medium . * New upstream version Checksums-Sha1

Accepted r-bioc-affyio 1.36.0-1 (source amd64) into unstable

...@lists.alioth.debian.org Changed-By: Andreas Tille ti...@debian.org Description: r-bioc-affyio - BioConductor tools for parsing Affymetrix data files Changes: r-bioc-affyio (1.36.0-1) unstable; urgency=medium . * New upstream version Checksums-Sha1: 47bd559fdc01af74f3cd7cfa53f14c42e8c5986b 2064 r-bioc

Bug#784873: ITP: r-bioc-annotate -- BioConductor annotation for microarrays

Package: wnpp Severity: wishlist Owner: Andreas Tille ti...@debian.org * Package name: r-bioc-annotate Version : 1.46.0 Upstream Author : Bioconductor Package Maintainer maintai...@bioconductor.org * URL : http://bioconductor.org/packages/release/bioc/html

Accepted r-bioc-annotationdbi 1.30.1-1 (source all) into unstable

...@lists.alioth.debian.org Changed-By: Andreas Tille ti...@debian.org Description: r-bioc-annotationdbi - GNU R Annotation Database Interface for BioConductor Changes: r-bioc-annotationdbi (1.30.1-1) unstable; urgency=medium . * New upstream version Checksums-Sha1

Bug#784887: ITP: r-cran-lambda.r -- GNU R modeling data with functional programming

Package: wnpp Severity: wishlist Owner: Andreas Tille ti...@debian.org * Package name: r-cran-lambda.r Version : 1.1.7 Upstream Author : Brian Lee Yung Rowe r...@zatonovo.com * URL : http://cran.r-project.org/web/packages/lambda.r * License : LGPL Programming

Accepted r-bioc-graph 1.46.0-1 (source amd64) into unstable

...@lists.alioth.debian.org Changed-By: Andreas Tille ti...@debian.org Description: r-bioc-graph - handle graph data structures for BioConductor Changes: r-bioc-graph (1.46.0-1) unstable; urgency=medium . * New upstream version Checksums-Sha1: 45d357c6c2763fac379fa4816cc30fd1c7460181 2096 r-bioc-graph_1.46.0

Accepted r-bioc-iranges 2.2.1-1 (source amd64) into unstable

...@lists.alioth.debian.org Changed-By: Andreas Tille ti...@debian.org Description: r-bioc-iranges - GNU R low-level containers for storing sets of integer ranges Changes: r-bioc-iranges (2.2.1-1) unstable; urgency=medium . * New upstream version Checksums-Sha1: d2b1e6f22658b0686f4a6680342db156ad17337f

Accepted r-bioc-xvector 0.8.0-1 (source amd64) into unstable

...@lists.alioth.debian.org Changed-By: Andreas Tille ti...@debian.org Description: r-bioc-xvector - BioConductor representation and manpulation of external sequences Changes: r-bioc-xvector (0.8.0-1) unstable; urgency=medium . * New upstream version Checksums-Sha1

Accepted r-bioc-hypergraph 1.40.0-1 (source all) into unstable

...@lists.alioth.debian.org Changed-By: Andreas Tille ti...@debian.org Description: r-bioc-hypergraph - BioConductor hypergraph data structures Changes: r-bioc-hypergraph (1.40.0-1) unstable; urgency=medium . * New upstream version * Fix test suite Checksums-Sha1

Accepted plastimatch 1.6.0+dfsg-1 (source amd64) into unstable

...@lists.alioth.debian.org Changed-By: Andreas Tille ti...@debian.org Description: plastimatch - medical image reconstruction and registration Changes: plastimatch (1.6.0+dfsg-1) unstable; urgency=medium . [ Gregory C. Sharp ] * New upstream release * debian/rules: Do not ship *.a and *.h code

Accepted r-bioc-biocgenerics 0.14.0-1 (source all) into unstable

...@lists.alioth.debian.org Changed-By: Andreas Tille ti...@debian.org Description: r-bioc-biocgenerics - generic functions for Bioconductor Changes: r-bioc-biocgenerics (0.14.0-1) unstable; urgency=medium . * New upstream version Checksums-Sha1: 3be8390cd6cef6322bca8d35ecbdd60bc3358525 2107 r

Accepted r-bioc-s4vectors 0.6.0-1 (source amd64) into unstable

...@lists.alioth.debian.org Changed-By: Andreas Tille ti...@debian.org Description: r-bioc-s4vectors - BioConductor S4 implementation of vectors and lists Changes: r-bioc-s4vectors (0.6.0-1) unstable; urgency=medium . * New upstream version Checksums-Sha1: 1094337121433ed77d5931fa02295dd0632b0085 2137

Accepted r-bioc-biobase 2.28.0-1 (source amd64) into unstable

...@lists.alioth.debian.org Changed-By: Andreas Tille ti...@debian.org Description: r-bioc-biobase - base functions for Bioconductor Changes: r-bioc-biobase (2.28.0-1) unstable; urgency=medium . * New upstream version Checksums-Sha1: fe7b659c82717825e1f35427e028d823e29ae09b 2085 r-bioc-biobase_2.28.0-1

Bug#785204: ITP: r-cran-ade4 -- GNU R analysis of ecological data

Package: wnpp Severity: wishlist Owner: Andreas Tille ti...@debian.org * Package name: r-cran-ade4 Version : 1.7-2 Upstream Author : Aurélie Siberchicot * URL : http://cran.r-project.org/web/packages/ade4/ * License : GPL Programming Lang: R Description

Bug#785210: ITP: r-bioc-multtest -- Bioconductor resampling-based multiple hypothesis testing

Package: wnpp Severity: wishlist Owner: Andreas Tille ti...@debian.org * Package name: r-bioc-multtest Version : 2.24.0 Upstream Author : Katherine S. Pollard * URL : http://bioconductor.org/packages/release/bioc/html/multtest.html * License : LGPL

Accepted r-bioc-makecdfenv 1.44.0-1 (source amd64) into unstable

...@lists.alioth.debian.org Changed-By: Andreas Tille ti...@debian.org Description: r-bioc-makecdfenv - BioConductor CDF Environment Maker Changes: r-bioc-makecdfenv (1.44.0-1) unstable; urgency=medium . * New upstream version Checksums-Sha1: 6f5a19c5b3bde62a2576690a9f3d5860b81e6262 2151 r-bioc

Accepted abyss 1.5.2-2 (source amd64) into unstable

Changed-By: Andreas Tille ti...@debian.org Description: abyss - de novo, parallel, sequence assembler for short reads Closes: 780409 Changes: abyss (1.5.2-2) unstable; urgency=medium . * abyss-fixmate and DistanceEst are expected to be in /usr/bin by sga * configure was missing ghc

Accepted trimmomatic 0.33+dfsg-1 (source all) into unstable

...@lists.alioth.debian.org Changed-By: Andreas Tille ti...@debian.org Description: trimmomatic - flexible read trimming tool for Illumina NGS data Changes: trimmomatic (0.33+dfsg-1) unstable; urgency=medium . * New upstream version * cme fix dpkg-control Checksums-Sha1

Re: Modern Debian packaging system for DevOps: does it exist?

Hi, On Fri, May 15, 2015 at 05:57:06PM +0200, gregor herrmann wrote: For pbuilder/cowbuilder I'm using the following hook: % cat /var/cache/pbuilder/hooks/D10-man-db #!/bin/sh # Don't rebuild man-db echo I: Preseed man-db/auto-update to false debconf-set-selections EOF man-db

Accepted python-biopython 1.65+dfsg-1 (source amd64 all) into unstable

: unstable Urgency: medium Maintainer: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Andreas Tille ti...@debian.org Description: python-biopython - Python library for bioinformatics (implemented in Python 2) python-biopython-doc - Documentation for the Biopython

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