Accepted macsyfinder 1.0.2-3 (source all) into unstable

kag...@lists.alioth.debian.org> Changed-By: Canberk Koç <canberk...@gmail.com> Description: macsyfinder - detection of macromolecular systems in protein datasets Changes: macsyfinder (1.0.2-3) unstable; urgency=medium . * Team upload . [ Andreas Tille ] * Move packaging from SVN to Git * A

Accepted njplot 2.4-4 (source amd64) into unstable

org> Changed-By: Canberk Koç <canberk...@gmail.com> Description: njplot - phylogenetic tree drawing program Changes: njplot (2.4-4) unstable; urgency=medium . * Team upload . [ Andreas Tille ] * Packaging moved from SVN to Git * cme fix dpkg-control * hardening=+all .

Accepted sim4 0.0.20121010-4 (source amd64) into unstable

kag...@lists.alioth.debian.org> Changed-By: Canberk Koç <canberk...@gmail.com> Description: sim4 - tool for aligning cDNA and genomic DNA Changes: sim4 (0.0.20121010-4) unstable; urgency=medium . [ Canberk Koç ] * Team upload. * Autopkgtests added * README.source file added Ch

Accepted phyml 3:3.2.0+dfsg-3 (source amd64) into unstable

kag...@lists.alioth.debian.org> Changed-By: Canberk Koç <canberk...@gmail.com> Description: phyml - Phylogenetic estimation using Maximum Likelihood Changes: phyml (3:3.2.0+dfsg-3) unstable; urgency=medium . * Team upload . [ Canberk Koç ] * autopkgtest added * fix autopkgtest . [ A

Accepted maq 0.7.1-7 (source amd64) into unstable

org> Changed-By: Canberk Koç <canberk...@gmail.com> Description: maq- maps short fixed-length polymorphic DNA sequence reads to referen Changes: maq (0.7.1-7) unstable; urgency=medium . * Team upload . [ Andreas Tille ] * Moved packaging from SVN to Git * hardening=+all .

Accepted ncbi-tools6 6.1.20120620-12 (source amd64 all) into unstable

all Version: 6.1.20120620-12 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Canberk Koç <canberk...@gmail.com> Description: blast2 - Basic Local Alignment Search Tool libncbi6 - NC

Accepted cd-hit 4.6.6-2 (source amd64) into unstable

org> Changed-By: Canberk Koç <canberk...@gmail.com> Description: cd-hit - suite of programs designed to quickly group sequences Changes: cd-hit (4.6.6-2) unstable; urgency=medium . [ Canberk Koç ] * Team upload. * Autopkgtest added . [ Andreas Tille ] * Install orig

Accepted tigr-glimmer 3.02-5 (source amd64) into unstable

kag...@lists.alioth.debian.org> Changed-By: Canberk Koç <canberk...@gmail.com> Description: tigr-glimmer - Gene detection in archea and bacteria Changes: tigr-glimmer (3.02-5) unstable; urgency=medium . * Team upload . [ Andreas Tille ] * Moved packaging from SVN to Git * hardening=+all *

Accepted emboss 6.6.0+dfsg-4 (source) into unstable

Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Canberk Koç <canberk...@gmail.com> Description: emboss - European molecular biology open software suite emboss-data - data files for the EMBOSS package emboss-doc - documentation for EMBOSS emboss-lib - EMBOSS Libra

Accepted amap-align 2.2-6 (source amd64) into unstable

kag...@lists.alioth.debian.org> Changed-By: Canberk Koç <canberk...@gmail.com> Description: amap-align - Protein multiple alignment by sequence annealing Changes: amap-align (2.2-6) unstable; urgency=medium . * Team upload . [ Andreas Tille ] * Add README.source * Moved packaging fro

Accepted htslib 1.3.1-2 (source all amd64) into unstable

med-packag...@lists.alioth.debian.org> Changed-By: Canberk Koç <canberk...@gmail.com> Description: htslib-test - Test data for HTSlib libhts-dev - Development files for the HTSlib libhts1- C library for high-throughput sequencing data formats tabix - generic indexer for TAB-deli

Accepted ncbi-blast+ 2.3.0-2 (source all amd64) into unstable

med-packag...@lists.alioth.debian.org> Changed-By: Canberk Koç <canberk...@gmail.com> Description: ncbi-blast+ - next generation suite of BLAST sequence search tools ncbi-blast+-legacy - NCBI Blast legacy call script Changes: ncbi-blast+ (2.3.0-2) unstable; urgency=medium . *

Accepted probcons 1.12-11 (source amd64) into unstable

kag...@lists.alioth.debian.org> Changed-By: Canberk Koç <canberk...@gmail.com> Description: probcons - PROBabilistic CONSistency-based multiple sequence alignment probcons-extra - Extra programs from the probcons package Changes: probcons (1.12-11) unstable; urgency=medium . [ Canberk Koç

Accepted fastqc 0.11.5+dfsg-3 (source all) into unstable

kag...@lists.alioth.debian.org> Changed-By: Canberk Koç <canberk...@gmail.com> Description: fastqc - quality control for high throughput sequence data Changes: fastqc (0.11.5+dfsg-3) unstable; urgency=medium . * Team upload. . [ Canberk Koç ] * Autopkgtest added . [ Andreas Tille ] *

Accepted kalign 1:2.03+20110620-3 (source amd64) into unstable

kag...@lists.alioth.debian.org> Changed-By: Canberk Koç <canberk...@gmail.com> Description: kalign - Global and progressive multiple sequence alignment Changes: kalign (1:2.03+20110620-3) unstable; urgency=low . * Team upload . [ Andreas Tille ] * debian/upstream: Added some information

Accepted mummer 3.23+dfsg-1 (source amd64 all) into unstable

kag...@lists.alioth.debian.org> Changed-By: Canberk Koç <canberk...@gmail.com> Description: mummer - Efficient sequence alignment of full genomes mummer-doc - Documentation for MUMmer Changes: mummer (3.23+dfsg-1) unstable; urgency=medium . * Team upload . [ Andreas Tille ] * Mov

Accepted gdpc 2.2.5-6 (source amd64 all) into unstable

kag...@lists.alioth.debian.org> Changed-By: Canberk Koç <canberk...@gmail.com> Description: gdpc - visualiser of molecular dynamic simulations gdpc-examples - example files for the gdpc program Changes: gdpc (2.2.5-6) unstable; urgency=medium . * Team upload . [ Andreas Tille ] * Mo

Accepted phylip 1:3.696+dfsg-3 (source amd64 all) into unstable

kag...@lists.alioth.debian.org> Changed-By: Canberk Koç <canberk...@gmail.com> Description: phylip - package of programs for inferring phylogenies phylip-doc - package of programs for inferring phylogenies (documentation) Changes: phylip (1:3.696+dfsg-3) unstable; urgency=medium . *

Accepted clustalw 2.1+lgpl-5 (source amd64) into unstable

kag...@lists.alioth.debian.org> Changed-By: Canberk Koç <canberk...@gmail.com> Description: clustalw - global multiple nucleotide or peptide sequence alignment Changes: clustalw (2.1+lgpl-5) unstable; urgency=medium . [ Canberk Koç ] * Team upload * autopkgtest added . [ Andreas Tille ] *

Accepted dialign 2.2.1-8 (source amd64) into unstable

org> Changed-By: Canberk Koç <canberk...@gmail.com> Description: dialign- Segment-based multiple sequence alignment Changes: dialign (2.2.1-8) unstable; urgency=medium . * Team upload . [ Andreas Tille ] * moved packaging from SVN to Git * DEP5 sequence *

Accepted clustalo 1.2.2-1 (source amd64 all) into unstable

ian-med-packag...@lists.alioth.debian.org> Changed-By: Canberk Koç <canberk...@gmail.com> Description: clustalo - General purpose multiple sequence alignment program for proteins libclustalo-dev - library to embed Clustal Omega libclustalo-doc - API documentation for library to embed C

Accepted hmmer 3.1b2+dfsg-1 (source amd64 all) into unstable, unstable

med-packag...@lists.alioth.debian.org> Changed-By: Canberk Koç <canberk...@gmail.com> Description: hmmer - profile hidden Markov models for protein sequence analysis hmmer-doc - profile hidden Markov models for protein sequence analysis (docs) hmmer-examples - profile hidden M

Accepted vcftools 0.1.14+dfsg-3 (source amd64) into unstable

kag...@lists.alioth.debian.org> Changed-By: Canberk Koç <canberk...@gmail.com> Description: vcftools - Collection of tools to work with VCF files Changes: vcftools (0.1.14+dfsg-3) unstable; urgency=medium . * Team upload . [ Andreas Tille ] * Move packaging from SVN to Git * cme fix

Accepted primer3 2.3.7-2 (source amd64 all) into unstable, unstable

kag...@lists.alioth.debian.org> Changed-By: Canberk Koç <canberk...@gmail.com> Description: primer3- tool to design flanking oligo nucleotides for DNA amplification primer3-examples - tool to design flanking oligo nucleotides for DNA amplification ( Changes: primer3 (2.3.7-2) unstable; ur

Accepted t-coffee 11.00.8cbe486-4 (source amd64 all) into unstable

med-packag...@lists.alioth.debian.org> Changed-By: Canberk Koç <canberk...@gmail.com> Description: t-coffee - Multiple Sequence Alignment t-coffee-examples - annotated examples for the use of T-Coffee Changes: t-coffee (11.00.8cbe486-4) unstable; urgency=medium . * Team upload

Accepted bwa 0.7.15-2 (source amd64) into unstable

kag...@lists.alioth.debian.org> Changed-By: Canberk Koç <canberk...@gmail.com> Description: bwa- Burrows-Wheeler Aligner libbwa-dev - Burrows-Wheeler Aligner source files Changes: bwa (0.7.15-2) unstable; urgency=medium . * Team upload * Added testsuite * debian/examples directory added Ch

Accepted infernal 1.1.1-5 (source amd64 all) into unstable

kag...@lists.alioth.debian.org> Changed-By: Canberk Koç <canberk...@gmail.com> Description: infernal - inference of RNA secondary structural alignments infernal-doc - inference of RNA secondary structural alignments – documentation Changes: infernal (1.1.1-5) unstable; urgency=medium . *

Accepted hmmer2 2.3.2-10 (source amd64 all) into unstable

kag...@lists.alioth.debian.org> Changed-By: Canberk Koç <canberk...@gmail.com> Description: hmmer2 - profile hidden Markov models for protein sequence analysis hmmer2-doc - profile hidden Markov models for protein sequence analysis (docs) hmmer2-pvm - HMMER programs with PVM (Para

Accepted exonerate 2.4.0-2 (source) into unstable

org> Changed-By: Canberk Koç <canberk...@gmail.com> Description: exonerate - generic tool for pairwise sequence comparison Changes: exonerate (2.4.0-2) unstable; urgency=medium . [ Canberk Koç ] * Team upload * debian/tests: added testsuite * debian/rules: changes