Accepted r-bioc-iranges 2.20.1-2 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Format: 1.8 Date: Fri, 17 Jan 2020 04:14:04 +0900 Source: r-bioc-iranges Architecture: source Version: 2.20.1-2 Distribution: unstable Urgency: medium Maintainer: Debian R Packages Maintainers Changed-By: Charles Plessy Changes: r-bioc-iranges

Accepted mime-support 3.64 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Format: 1.8 Date: Sun, 06 Oct 2019 22:11:08 +0900 Source: mime-support Architecture: source Version: 3.64 Distribution: unstable Urgency: medium Maintainer: Mime-Support Packagers Changed-By: Charles Plessy Closes: 939226 939587 Changes: mime

Accepted mime-support 3.63 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Format: 1.8 Date: Sun, 11 Aug 2019 08:53:20 +0900 Source: mime-support Architecture: source Version: 3.63 Distribution: unstable Urgency: medium Maintainer: Mime-Support Packagers Changed-By: Charles Plessy Closes: 783195 803729 927300 931300

Accepted bedtools 2.27.1+dfsg-4 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Format: 1.8 Date: Thu, 14 Feb 2019 22:11:21 +0900 Source: bedtools Binary: bedtools bedtools-test Architecture: source Version: 2.27.1+dfsg-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Charles Plessy

Accepted perlprimer 1.2.4-1 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Format: 1.8 Date: Wed, 13 Feb 2019 21:28:09 +0900 Source: perlprimer Binary: perlprimer perlprimer-doc Architecture: source Version: 1.2.4-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Charles Plessy

Accepted mime-support 3.62 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Format: 1.8 Date: Sat, 09 Feb 2019 21:32:33 +0900 Source: mime-support Binary: mime-support Architecture: source Version: 3.62 Distribution: unstable Urgency: medium Maintainer: Mime-Support Packagers Changed-By: Charles Plessy Description: mime

Accepted euca2ools 3.3.1-2 (source all) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Format: 1.8 Date: Mon, 02 Jul 2018 07:35:23 +0900 Source: euca2ools Binary: euca2ools Architecture: source all Version: 3.3.1-2 Distribution: unstable Urgency: medium Maintainer: Debian Cloud team Changed-By: Charles Plessy Description: euca2ools

Accepted mime-support 3.61 (source all) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Format: 1.8 Date: Sat, 16 Jun 2018 17:55:26 +0900 Source: mime-support Binary: mime-support Architecture: source all Version: 3.61 Distribution: unstable Urgency: medium Maintainer: Mime-Support Packagers Changed-By: Charles Plessy Description

Accepted solvate 1.0-2 (source amd64 all) into unstable, unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Sat, 22 Mar 2008 11:32:31 +0900 Source: solvate Binary: solvate solvate-doc Architecture: source amd64 all Version: 1.0-2 Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team Changed-By: Charles Plessy

Accepted libtfbs-perl 0.7.1-1 (source amd64) into unstable

kag...@lists.alioth.debian.org> Changed-By: Charles Plessy <ple...@debian.org> Description: libtfbs-perl - scanning DNA sequence with a position weight matrix Changes: libtfbs-perl (0.7.1-1) unstable; urgency=medium . * New upstream version 0.7.1 * d/copyright, d/watch: Stop repacking upstream sou

Accepted last-align 885-1 (source) into unstable

org> Changed-By: Charles Plessy <ple...@debian.org> Description: last-align - genome-scale comparison of biological sequences Changes: last-align (885-1) unstable; urgency=medium . * New upstream version 885 * debian/rules: re-enable multi-threading. * debian/control: build-depe

Accepted r-cran-pheatmap 1.0.8-2 (source) into unstable

kag...@lists.alioth.debian.org> Changed-By: Charles Plessy <ple...@debian.org> Description: r-cran-pheatmap - GNU R package to create pretty heatmaps Changes: r-cran-pheatmap (1.0.8-2) unstable; urgency=medium . * Team upload. * Rebuild for the r-base-3.4 transition. * Moved packaging fro

Accepted bedtools 2.26.0+dfsg-5 (source) into unstable

kag...@lists.alioth.debian.org> Changed-By: Charles Plessy <ple...@debian.org> Description: bedtools - suite of utilities for comparing genomic features bedtools-test - test data for the bedtools package Closes: 876802 Changes: bedtools (2.26.0+dfsg-5) unstable; urgency=medium

Accepted bedtools 2.26.0+dfsg-4 (source) into unstable

kag...@lists.alioth.debian.org> Changed-By: Charles Plessy <ple...@debian.org> Description: bedtools - suite of utilities for comparing genomic features bedtools-test - test data for the bedtools package Changes: bedtools (2.26.0+dfsg-4) unstable; urgency=medium . [ Andreas Tille ] * Fix

Accepted pvclust 2.0-0-2 (source) into unstable

kag...@lists.alioth.debian.org> Changed-By: Charles Plessy <ple...@debian.org> Description: r-cran-pvclust - Hierarchical Clustering with P-Values via Multiscale Bootstrap Changes: pvclust (2.0-0-2) unstable; urgency=medium . * Team upload * Rebuild for r-api-3.4. * cme fix dpkg-control (VCS fi

Accepted perlprimer 1.2.3-1 (source all) into unstable

kag...@lists.alioth.debian.org> Changed-By: Charles Plessy <ple...@debian.org> Description: perlprimer - Graphical design of primers for PCR perlprimer-doc - Tutorial to perlprimer Closes: 708477 Changes: perlprimer (1.2.3-1) unstable; urgency=medium . 00b28ba New upstream version 1.2.3, clo

Accepted bedtools 2.26.0+dfsg-3 (source) into unstable

kag...@lists.alioth.debian.org> Changed-By: Charles Plessy <ple...@debian.org> Description: bedtools - suite of utilities for comparing genomic features bedtools-test - test data for the bedtools package Closes: 831833 Changes: bedtools (2.26.0+dfsg-3) unstable; urgency=medium .

Accepted euca2ools 3.3.1-1 (source all) into unstable

ain...@lists.alioth.debian.org> Changed-By: Charles Plessy <ple...@debian.org> Description: euca2ools - tools for interacting with AWS API-compatible services Closes: 841480 Changes: euca2ools (3.3.1-1) unstable; urgency=medium . d271cb9 Merge tag 'v3.3.1'. Closes: #841480. LP: #1527341. 3f4

Accepted bedtools 2.26.0+dfsg-1 (source amd64 all) into unstable

kag...@lists.alioth.debian.org> Changed-By: Charles Plessy <ple...@debian.org> Description: bedtools - suite of utilities for comparing genomic features bedtools-test - test data for the bedtools package Closes: 805998 Changes: bedtools (2.26.0+dfsg-1) unstable; urgency=medium .

Accepted last-align 746-1 (source amd64) into unstable

kag...@lists.alioth.debian.org> Changed-By: Charles Plessy <ple...@debian.org> Description: last-align - genome-scale comparison of biological sequences Changes: last-align (746-1) unstable; urgency=medium . * New upstream version Checksums-Sha1: e0146cea3fb7c184c7be6abb17630a12d88713e8 1967 last-ali

Accepted samtools 1.3.1-2 (source) into unstable

kag...@lists.alioth.debian.org> Changed-By: Charles Plessy <ple...@debian.org> Description: samtools - processing sequence alignments in SAM and BAM formats samtools-test - test files for the samtools package Closes: 822701 Changes: samtools (1.3.1-2) unstable; urgency=medium . 952da10 Build-depen

Accepted mime-support 3.60 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Format: 1.8 Date: Sun, 01 May 2016 20:20:22 +0900 Source: mime-support Binary: mime-support Architecture: source Version: 3.60 Distribution: unstable Urgency: medium Maintainer: Mime-Support Maintainers <mime-supp...@plessy.org> Changed-By: C

Accepted samtools 1.3.1-1 (source) into unstable

kag...@lists.alioth.debian.org> Changed-By: Charles Plessy <ple...@debian.org> Description: samtools - processing sequence alignments in SAM and BAM formats samtools-test - test files for the samtools package Changes: samtools (1.3.1-1) unstable; urgency=medium . 0c961b2 Merge tag '1.3.1' into deb

Accepted htslib 1.3.1-1 (source) into unstable

kag...@lists.alioth.debian.org> Changed-By: Charles Plessy <ple...@debian.org> Description: htslib-test - Test data for HTSlib libhts-dev - Development files for the HTSlib libhts1- C library for high-throughput sequencing data formats tabix - generic indexer for TAB-delimited gen

Accepted libbio-samtools-perl 1.43-1 (source amd64) into unstable

ain...@lists.alioth.debian.org> Changed-By: Charles Plessy <ple...@debian.org> Description: libbio-samtools-perl - Perl interface to SamTools library for DNA sequencing Changes: libbio-samtools-perl (1.43-1) unstable; urgency=medium . [ Charles Plessy ] dd47de5 Imported Upstream

Accepted staden-io-lib 1.14.3-1 (source amd64 all) into unstable

Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Charles Plessy <ple...@debian.org> Description: libstaden-read-dev - development files for libstaden-read libstaden-read11 - Staden library for reading and writing DNA sequencing result

Accepted transrate-tools 1.0.0-1 (source amd64) into unstable, unstable

kag...@lists.alioth.debian.org> Changed-By: Charles Plessy <ple...@debian.org> Description: transrate-tools - helper for transrate Closes: 800412 Changes: transrate-tools (1.0.0-1) unstable; urgency=low . * Team upload. . [ Michael R. Crusoe ] * Initial release (Closes: #800412) Ch

Accepted libmath-random-perl 0.72-1 (source amd64) into unstable

ain...@lists.alioth.debian.org> Changed-By: Charles Plessy <ple...@debian.org> Description: libmath-random-perl - Perl collection of random number generators Changes: libmath-random-perl (0.72-1) unstable; urgency=medium . * New upstream release. . [ Salvatore Bonaccorso ] * Update Vcs

Accepted samtools 1.2-2 (source all amd64) into unstable

kag...@lists.alioth.debian.org> Changed-By: Charles Plessy <ple...@debian.org> Description: samtools - processing sequence alignments in SAM and BAM formats samtools-test - test files for the samtools package. Changes: samtools (1.2-2) unstable; urgency=medium . [ Afif Elghraoui ] eb569

Accepted bedtools 2.25.0-1 (source all amd64) into unstable

kag...@lists.alioth.debian.org> Changed-By: Charles Plessy <ple...@debian.org> Description: bedtools - suite of utilities for comparing genomic features bedtools-test - test data for the bedtools package Changes: bedtools (2.25.0-1) unstable; urgency=medium . e37865 Merge tag 'v2.25.0'

Accepted mime-support 3.59 (source all) into unstable

-By: Charles Plessy ple...@debian.org Description: mime-support - MIME files 'mime.types' 'mailcap', and support programs Closes: 774303 776939 787459 793705 Changes: mime-support (3.59) unstable; urgency=medium . * Media types bdfd714 Add media types and extensions to support ClickOnce apps

Accepted bwa 0.7.12-2 (source amd64) into unstable

-By: Charles Plessy ple...@debian.org Description: bwa- Burrows-Wheeler Aligner Changes: bwa (0.7.12-2) unstable; urgency=medium . * Upload to Unstable. * Install bash completion script in /usr/share/bash-completion/completions. * Also distribute README-alt.md. * Watch GitHub

Accepted bioperl-run 1.6.9-3 (source all) into unstable

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: bioperl-run - BioPerl wrappers: scripts libbio-perl-run-perl - BioPerl wrappers: modules Closes: 78 Changes: bioperl-run (1.6.9-3) unstable; urgency=medium . [ Charles Plessy ] * Build-depend

Accepted libbio-samtools-perl 1.41-1 (source amd64) into unstable

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: libbio-samtools-perl - Perl interface to SamTools library for DNA sequencing Changes: libbio-samtools-perl (1.41-1) unstable; urgency=medium . 0b7140a Imported Upstream version 1.41 Checksums-Sha1

Accepted samtools 1.2-1 (source all amd64) into unstable

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: samtools - processing sequence alignments in SAM and BAM formats samtools-test - test files for the samtools package. Changes: samtools (1.2-1) unstable; urgency=medium . a5f28a0 Merge tag '1.2' into debian/unstable

Accepted r-cran-rcurl 1.95-4.3-2 (source amd64) into unstable

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: r-cran-rcurl - GNU R General network (HTTP/FTP/...) client interface Closes: 786473 Changes: r-cran-rcurl (1.95-4.3-2) unstable; urgency=medium . * Team upload. * Build-Depend on libcurl4-openssl-dev only (Closes

Accepted odt2txt 0.5-1 (source amd64) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Format: 1.8 Date: Sun, 31 May 2015 09:52:44 +0900 Source: odt2txt Binary: odt2txt Architecture: source amd64 Version: 0.5-1 Distribution: unstable Urgency: medium Maintainer: Nelson A. de Oliveira nao...@debian.org Changed-By: Charles Plessy ple

Accepted htslib 1.2.1-1 (source all amd64) into unstable

-packag...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: htslib-test - Test data for HTSlib libhts-dev - Development files for the HTSlib libhts1- C library for high-throughput sequencing data formats tabix - generic indexer for TAB-delimited genome

Accepted bowtie 1.1.1-2 (source amd64 all) into unstable

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: bowtie - Ultrafast memory-efficient short read aligner bowtie-examples - Examples for bowtie, the ultrafast memory-efficient short read al Closes: 776881 Changes: bowtie (1.1.1-2) unstable; urgency=high . * Team

Accepted mime-support 3.58 (source all) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Format: 1.8 Date: Sun, 28 Dec 2014 14:45:59 +0900 Source: mime-support Binary: mime-support Architecture: source all Version: 3.58 Distribution: unstable Urgency: high Maintainer: Mime-Support Maintainers mime-supp...@plessy.org Changed-By: Charles

Accepted seaview 1:4.5.3.1-2 (source amd64) into unstable

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: seaview- Multiplatform interface for sequence alignment and phylogeny Closes: 765824 Changes: seaview (1:4.5.3.1-2) unstable; urgency=medium . * Remove unneeded build-dependance on libjpeg8-dev (Closes: #765824). Checksums-Sha1

Accepted euca2ools 3.1.0-1 (source all) into unstable

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: euca2ools - tools for interacting with AWS API-compatible services Closes: 734616 758910 Changes: euca2ools (3.1.0-1) unstable; urgency=medium . 5d9d911 Merge tag 'v3.1.0' into debian/unstable Closes: #734616

Accepted euca2ools 3.2.0~pre1-1 (source all) into experimental

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: euca2ools - tools for interacting with AWS API-compatible services Changes: euca2ools (3.2.0~pre1-1) experimental; urgency=medium . 493e785 Merged upstream tag v3.2.0-pre1. 3f4b6a5 Depends on python

Accepted odt2txt 0.4+git20140608-1 (source amd64) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Format: 1.8 Date: Sat, 04 Oct 2014 17:21:42 +0900 Source: odt2txt Binary: odt2txt Architecture: source amd64 Version: 0.4+git20140608-1 Distribution: unstable Urgency: medium Maintainer: Nelson A. de Oliveira nao...@debian.org Changed-By: Charles

Accepted mime-support 3.57 (source all) into unstable

-By: Charles Plessy ple...@debian.org Description: mime-support - MIME files 'mime.types' 'mailcap', and support programs Closes: 749771 756754 759746 Changes: mime-support (3.57) unstable; urgency=medium . * Media types added: ef09adf application/x-xz Closes: #756754

Accepted mafft 7.187-1 (source amd64) into unstable

Changed-By: Charles Plessy ple...@debian.org Description: mafft - Multiple alignment program for amino acid or nucleotide sequences Changes: mafft (7.187-1) unstable; urgency=medium . * New upstream release. * Conforms to Policy 3.9.6. Checksums-Sha1

Accepted htslib 1.1-1 (source amd64 all) into unstable

-packag...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: htslib-test - Test data for HTSlib libhts-dev - Development files for the HTSlib libhts1- C library for high-throughput sequencing data formats tabix - generic indexer for TAB-delimited genome

Accepted samtools 1.1-1 (source amd64 all) into unstable

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: samtools - processing sequence alignments in SAM and BAM formats samtools-test - test files for the samtools package. Changes: samtools (1.1-1) unstable; urgency=medium . c448d48 Merge tag '1.1' into debian/unstable

Accepted bedtools 2.21.0-1 (source amd64 all) into unstable

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: bedtools - suite of utilities for comparing genomic features bedtools-test - test data for the bedtools package Changes: bedtools (2.21.0-1) unstable; urgency=medium . 856a5fd Merge tag 'v2.21.0' into debian

Accepted paraclu 9-1 (source amd64) into unstable, unstable

-By: Charles Plessy ple...@debian.org Description: paraclu- Parametric clustering of genomic and transcriptomic features Closes: 762412 Changes: paraclu (9-1) unstable; urgency=low . * First upload to the Debian archive, closes: #762412. Checksums-Sha1

Accepted wise 2.4.1-17 (source amd64 all) into unstable

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: wise - comparison of biopolymers, like DNA and protein sequences wise-data - data files for the wise package wise-doc - documentation for the wise package Changes: wise (2.4.1-17) unstable; urgency=medium

Accepted samtools 1.0-1 (source amd64 all) into unstable

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: samtools - processing sequence alignments in SAM and BAM formats samtools-test - test files for the samtools package. Closes: 544976 Changes: samtools (1.0-1) unstable; urgency=low . [ Charles Plessy ] 54ca0c1 Merge

Accepted seaview 1:4.5.2-1 (source amd64) into unstable

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: seaview- Multiplatform interface for sequence alignment and phylogeny Changes: seaview (1:4.5.2-1) unstable; urgency=medium . * New upstream version. * New homepage. Checksums-Sha1: b9e006bc1677bcb30ea9af5efc0efe28541eb001

Accepted samtools-legacy 0.1.19-2 (source amd64) into unstable, unstable

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: libbam-dev - manipulates nucleotide sequence alignments in BAM or SAM format Changes: samtools-legacy (0.1.19-2) unstable; urgency=medium . 1bb181e Build libbam-dev from version 0.1.19 in a “legacy” source package. Checksums

Accepted htslib 1.0-2 (source amd64 all) into unstable

-packag...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: htslib-test - Test data for HTSlib libhts-dev - Development files for the HTSlib libhts1- C library for high-throughput sequencing data formats tabix - generic indexer for TAB-delimited genome

Accepted samtools 1.0-1~experimental (source amd64 all) into experimental, experimental

-packag...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: samtools - processing sequence alignments in SAM and BAM formats samtools-test - test files for the samtools package. Closes: 544976 Changes: samtools (1.0-1~experimental) experimental; urgency=low

Accepted htslib 1.0-1 (source amd64 all) into experimental, experimental

-packag...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: htslib-test - Test data for HTSlib libhts-dev - Development files for the HTSlib libhts1- C library for high-throughput sequencing data formats tabix - generic indexer for TAB-delimited genome

Accepted last-align 475-1 (source amd64) into unstable

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: last-align - genome-scale comparison of biological sequences Changes: last-align (475-1) unstable; urgency=medium . * New upstream release. * debian/rules: - removed compression command, as it is now the default

Accepted treeviewx 0.5.1+20100823-3 (source amd64) into unstable

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: treeviewx - Displays and prints phylogenetic trees Closes: 751255 Changes: treeviewx (0.5.1+20100823-3) unstable; urgency=low . * Normalised debian/control and updated VCS URLs with ‘config-model-edit’. * Conforms

Accepted infernal 1.1.1-1 (source amd64 all) into unstable

-packag...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: infernal - inference of RNA secondary structural alignments infernal-dbg - debug information for infernal infernal-doc - inference of RNA secondary structural alignments – documentation Changes: infernal

Accepted wsdl2c 0.1-3 (source all)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: libwsdl2c-java - stripped down axis2 source bundle suitable for running WSDL2C Closes: 755333 Changes: wsdl2c (0.1-3) unstable; urgency=low . [ Charles Plessy ] * Team upload. * Normalised debian/control with config-model

Accepted bioperl 1.6.924-1 (source all)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: bioperl- Perl tools for computational molecular biology libbio-perl-perl - BioPerl core perl modules Changes: bioperl (1.6.924-1) unstable; urgency=medium . * New upstream release. Checksums-Sha1

Accepted mafft 7.158-1 (source amd64)

Changed-By: Charles Plessy ple...@debian.org Description: mafft - Multiple alignment program for amino acid or nucleotide sequences Changes: mafft (7.158-1) unstable; urgency=medium . * New upstream release. Checksums-Sha1: dad5756c248bb7748a234e59667d138326bead5a 1974 mafft_7.158-1.dsc

Accepted cloud-init 0.7.6~bzr976-2 (source all)

-BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Format: 1.8 Date: Sat, 05 Jul 2014 20:27:10 +0900 Source: cloud-init Binary: cloud-init Architecture: source all Version: 0.7.6~bzr976-2 Distribution: unstable Urgency: medium Maintainer: Charles Plessy ple...@debian.org Changed-By: Charles Plessy

Accepted staden-io-lib 1.13.7-1 (source amd64 all)

Maintainer: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: libstaden-read-dev - development files for libstaden-read libstaden-read1 - Staden library for reading and writing DNA sequencing results staden-io-lib

Accepted mafft 7.157-1 (source amd64)

Changed-By: Charles Plessy ple...@debian.org Description: mafft - Multiple alignment program for amino acid or nucleotide sequences Changes: mafft (7.157-1) unstable; urgency=medium . * New upstream release. * debian/control - Added substitution variable ${perl:Depends}, used

Accepted umegaya 1.0 (source all)

-BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Format: 1.8 Date: Wed, 04 Jun 2014 21:35:38 +0900 Source: umegaya Binary: umegaya Architecture: source all Version: 1.0 Distribution: unstable Urgency: low Maintainer: Charles Plessy ple...@debian.org Changed-By: Charles Plessy ple...@debian.org

Accepted cloud-init 0.7.6~bzr976-1 (source all)

-BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Format: 1.8 Date: Wed, 04 Jun 2014 07:21:45 +0900 Source: cloud-init Binary: cloud-init Architecture: source all Version: 0.7.6~bzr976-1 Distribution: unstable Urgency: medium Maintainer: Charles Plessy ple...@debian.org Changed-By: Charles Plessy

Accepted mime-support 3.56 (source all)

-By: Charles Plessy ple...@debian.org Description: mime-support - MIME files 'mime.types' 'mailcap', and support programs Changes: mime-support (3.56) unstable; urgency=medium . * Media types added: e47e5a6 application/vnd.debian.binary-package . * Mailcap: e47e5a6 Replaced a/x-debian

Accepted cloud-init 0.7.5-1 (source all)

-BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Format: 1.8 Date: Sat, 17 May 2014 14:21:24 +0900 Source: cloud-init Binary: cloud-init Architecture: source all Version: 0.7.5-1 Distribution: unstable Urgency: medium Maintainer: Charles Plessy ple...@debian.org Changed-By: Charles Plessy ple

Accepted seaview 1:4.5.1-1 (source amd64)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: seaview- Multiplatform interface for sequence alignment and phylogeny Changes: seaview (1:4.5.1-1) unstable; urgency=medium . * New upstream version . [ Andreas Tille ] * debian/upstream - debian/upstream/metadata

Accepted mime-support 3.55 (source all)

-BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Format: 1.8 Date: Wed, 07 May 2014 07:03:23 +0900 Source: mime-support Binary: mime-support Architecture: source all Version: 3.55 Distribution: unstable Urgency: low Maintainer: Mime-Support Maintainers mime-supp...@plessy.org Changed-By: Charles

Accepted python-pysam 0.7.7-1 (source amd64 all)

-packag...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: python-pysam - interface for the SAM/BAM sequence alignment and mapping format python-pysam-tests - interface for the SAM/BAM sequence alignment and mapping format ( Changes: python-pysam (0.7.7-1

Accepted mafft 7.149-1 (source amd64)

Changed-By: Charles Plessy ple...@debian.org Description: mafft - Multiple alignment program for amino acid or nucleotide sequences Changes: mafft (7.149-1) unstable; urgency=medium . * New upstream release. Checksums-Sha1: 9860f9f5f68216c164addcc18af4710627d4a73b 1969 mafft_7.149-1.dsc

Accepted picard-tools 1.110-1 (source all)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: libsam-java - Java library to manipulate SAM and BAM files picard-tools - Command line tools to manipulate SAM and BAM files Changes: picard-tools (1.110-1) unstable; urgency=medium . * Imported Upstream version

Accepted mafft 7.147-1 (source amd64)

Changed-By: Charles Plessy ple...@debian.org Description: mafft - Multiple alignment program for amino acid or nucleotide sequences Changes: mafft (7.147-1) unstable; urgency=medium . * New upstream release. Checksums-Sha1: 19af6e72658c8d7a2f02d6c9342cc36453be9845 1969 mafft_7.147-1.dsc

Accepted bedtools 2.19.1-1 (source all amd64)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: bedtools - suite of utilities for comparing genomic features bedtools-test - test data for the bedtools package Changes: bedtools (2.19.1-1) unstable; urgency=medium . 479e63b Merge tag 'v2.19.1' into debian

Accepted picard-tools 1.109-1 (source all)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: libsam-java - Java library to manipulate SAM and BAM files picard-tools - Command line tools to manipulate SAM and BAM files Changes: picard-tools (1.109-1) unstable; urgency=medium . * Imported Upstream versions

Accepted staden-io-lib 1.13.5-1 (source amd64)

Packaging Team debian-med-packag...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: libstaden-read-dev - development files for libstaden-read libstaden-read1 - Staden library for reading and writing DNA sequencing results staden-io-lib-utils - programs

Accepted bedtools 2.19.0-1 (source amd64)

Changed-By: Charles Plessy ple...@debian.org Description: bedtools - suite of utilities for comparing genomic features Closes: 714873 Changes: bedtools (2.19.0-1) unstable; urgency=low . e07e70c Imported Upstream version 2.19.0 afdc61a Watch GitHub at https://github.com/arq5x/bedtools2

Accepted libgo-perl 0.15-1 (source all)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: libgo-perl - perl modules for GO and other OBO ontologies Changes: libgo-perl (0.15-1) unstable; urgency=medium . * New upstream release. * Syntax corrections in machine-readable debian/copyright file. * Normalised debian

Accepted aeskulap 0.2.2b1-13 (source amd64)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: aeskulap - medical image viewer and DICOM network client Closes: 735992 Changes: aeskulap (0.2.2b1-13) unstable; urgency=medium . * Team upload. * Build-depend on ‘libtiff-dev’ instead of ‘libtiff4-dev’. Closes: #735992

Accepted perlprimer 1.1.21-2 (source all)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: perlprimer - Graphical design of primers for PCR perlprimer-doc - Tutorial to perlprimer Changes: perlprimer (1.1.21-2) unstable; urgency=medium . [ Steffen Moeller ] 8f8aacf Fixed a series of errors indicated

Accepted pv-grub-menu 1.3 (source all)

-BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Format: 1.8 Date: Sun, 26 Jan 2014 08:59:26 +0900 Source: pv-grub-menu Binary: pv-grub-menu Architecture: source all Version: 1.3 Distribution: unstable Urgency: medium Maintainer: Charles Plessy ple...@debian.org Changed-By: Charles Plessy ple

Accepted mafft 7.130-1 (source amd64)

-By: Charles Plessy ple...@debian.org Description: mafft - Multiple alignment program for amino acid or nucleotide sequences Changes: mafft (7.130-1) unstable; urgency=low . * New upstream release. * Correct ‘XS-Testsuite’ to ‘Testsuite’ in debian/control. Checksums-Sha1

Accepted bioperl 1.6.923-1 (source all)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: bioperl- Perl tools for computational molecular biology libbio-perl-perl - BioPerl core perl modules Changes: bioperl (1.6.923-1) unstable; urgency=medium . * New upstream release. * Does not need non-free

Accepted fastx-toolkit 0.0.14-1 (source amd64)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: fastx-toolkit - FASTQ/A short nucleotide reads pre-processing tools Closes: 715887 715888 Changes: fastx-toolkit (0.0.14-1) unstable; urgency=low . 53f820d New upstream release (Closes: 715887, 715888) 6a99f79 Default

Accepted libgtextutils 0.7-1 (source amd64)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: libgtextutils-dev - Gordon Text_utils library (development files) libgtextutils0 - Gordon Text_utils library Changes: libgtextutils (0.7-1) unstable; urgency=low . * New upstream release. . ff09484

Accepted rtax 0.984-2 (source all)

-By: Charles Plessy ple...@debian.org Description: rtax - Classification of sequence reads of 16S ribosomal RNA gene Closes: 724280 Changes: rtax (0.984-2) unstable; urgency=medium . * Team upload. * Corrected the name of the copyright holders. . rtax (0.984-1) unstable; urgency=low

Accepted pv-grub-menu 1.2 (source all)

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Wed, 11 Sep 2013 08:36:20 +0900 Source: pv-grub-menu Binary: pv-grub-menu Architecture: source all Version: 1.2 Distribution: unstable Urgency: low Maintainer: Charles Plessy ple...@debian.org Changed-By: Charles Plessy ple

Accepted htslib 0.2.0~rc3-1 (source amd64 all)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: htslib-test - Test data for HTSlib libhts-dev - Development files for the HTSlib libhts0- C library for high-throughput sequencing data formats Closes: 729282 Changes: htslib (0.2.0~rc3-1) unstable

Accepted mafft 7.127-1 (source amd64)

-By: Charles Plessy ple...@debian.org Description: mafft - Multiple alignment program for amino acid or nucleotide sequences Closes: 728190 Changes: mafft (7.127-1) unstable; urgency=low . * New upstream release. * debian/tests/with-example-data: Don't write progress to stderr

Accepted staden-io-lib 1.13.3-1 (source amd64)

Team debian-med-packag...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: libstaden-read-dev - development files for libstaden-read libstaden-read1 - Staden library for reading and writing DNA sequencing results staden-io-lib-utils - programs for maniuplating

Accepted hmmer2 2.3.2-7 (source amd64 all)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: hmmer2 - profile hidden Markov models for protein sequence analysis hmmer2-doc - profile hidden Markov models for protein sequence analysis (docs) hmmer2-pvm - HMMER programs with PVM (Parallel Virtual Machine

Accepted infernal 1.1-1 (source amd64 all)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: infernal - inference of RNA secondary structural alignments infernal-dbg - debug information for infernal infernal-doc - inference of RNA secondary structural alignments – documentation Changes: infernal

Accepted t-coffee 10.00.r1613-1 (source amd64 all)

...@lists.alioth.debian.org Changed-By: Charles Plessy ple...@debian.org Description: t-coffee - Multiple Sequence Alignment t-coffee-examples - annotated examples for the use of T-Coffee Changes: t-coffee (10.00.r1613-1) unstable; urgency=low . * New upstream release. Checksums-Sha1

Accepted filo 1.1+2011123001.1 (source amd64)

Changed-By: Charles Plessy ple...@debian.org Description: filo - FILe and stream Operations Changes: filo (1.1+2011123001.1) unstable; urgency=low . be0c1cd Enhances: bedtools a79310d Normalised debian/control with ‘config-model-edit’. 9f90d4b Normalised VCS URLs. 026039b

Accepted mime-support 3.55~experimental1 (source all)

Changed-By: Charles Plessy ple...@debian.org Description: mime-support - MIME files 'mime.types' 'mailcap', and support programs Closes: 418564 589991 674670 688872 720619 727156 Changes: mime-support (3.55~experimental1) experimental; urgency=low . 0f12ec4 Added ‘application/font-woff

Accepted getdata 0.2-1 (source all)

-BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Format: 1.8 Date: Mon, 28 Oct 2013 18:57:31 +0900 Source: getdata Binary: getdata Architecture: source all Version: 0.2-1 Distribution: unstable Urgency: low Maintainer: Steffen Moeller moel...@debian.org Changed-By: Charles Plessy ple...@debian.org

Accepted debian-policy 3.9.5.0 (source all)

-By: Charles Plessy ple...@debian.org Description: debian-policy - Debian Policy Manual and related documents Closes: 668394 669915 671355 676784 679326 690293 691352 697433 698030 700536 700574 701081 703022 704657 705403 706778 707077 707183 715804 720507 Changes: debian-policy (3.9.5.0) unstable

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