Accepted brian 2.2.2.1-1 (source all amd64) into experimental, experimental

Changed-By: Andreas Tille Description: python-brian-doc - simulator for spiking neural networks - documentation python3-brian - simulator for spiking neural networks python3-brian-lib - simulator for spiking neural networks -- extensions Closes: 876920 896426 936239 Changes: brian (2.2.2.1-1

Accepted bbmap 38.43+dfsg-1 (source amd64 all) into experimental, experimental

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Wed, 27 Mar 2019 21:58:48 +0100 Source: bbmap Binary: bbmap bbmap-jni Architecture: source amd64 all Version: 38.43+dfsg-1 Distribution: experimental Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille

Accepted r-bioc-biocgenerics 0.30.0-1 (source) into experimental

-By: Andreas Tille Description: r-bioc-biocgenerics - generic functions for Bioconductor Changes: r-bioc-biocgenerics (0.30.0-1) experimental; urgency=medium . [ Dylan Aïssi ] * Add Testsuite: autopkgtest-pkg-r * Add reference in d/upstream/metadata. . [ Andreas Tille ] * New upstream

Accepted blends 0.7.3 (source) into experimental

Team Changed-By: Andreas Tille Description: blends-common - Debian Pure Blends common package blends-dev - Debian Pure Blends common files for developing metapackages blends-doc - Debian Pure Blends documentation blends-tasks - Debian Pure Blends tasks for new installations python3-blends

Accepted ruamel.yaml 0.15.89-1 (source) into experimental

-By: Andreas Tille Description: python-ruamel.yaml - roundtrip YAML parser/emitter (Python 2 module) python3-ruamel.yaml - roundtrip YAML parser/emitter (Python 3 module) Changes: ruamel.yaml (0.15.89-1) experimental; urgency=medium . * Team upload. . [ Ondřej Nový ] * d/control: Set

Accepted virtuoso-opensource 7.2.5.1+dfsg-2 (source) into experimental

: experimental Urgency: medium Maintainer: Debian Science Maintainers Changed-By: Andreas Tille Description: libvirtodbc0 - high-performance database - ODBC libraries libvirtuoso5.5-cil - high-performance database - Mono assemblies virtuoso-minimal - high-performance database - core dependency package

Accepted statsmodels 0.9.0-2 (source) into experimental

: experimental Urgency: medium Maintainer: Debian Science Maintainers Changed-By: Andreas Tille Description: python-statsmodels - Python module for the estimation of statistical models python-statsmodels-doc - documentation and examples for statsmodels python-statsmodels-lib - low-level implementations

Accepted statsmodels 0.9.0-1 (source) into experimental

: experimental Urgency: medium Maintainer: Debian Science Maintainers Changed-By: Andreas Tille Description: python-statsmodels - Python module for the estimation of statistical models python-statsmodels-doc - documentation and examples for statsmodels python-statsmodels-lib - low-level implementations

Accepted virtuoso-opensource 7.2.5.1+dfsg-1 (source amd64 all) into experimental, experimental

: experimental Urgency: medium Maintainer: Debian Science Maintainers Changed-By: Andreas Tille Description: libvirtodbc0 - high-performance database - ODBC libraries libvirtuoso5.5-cil - high-performance database - Mono assemblies virtuoso-minimal - high-performance database - core dependency

Accepted samtools 1.8-1 (source) into experimental

kag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: samtools - processing sequence alignments in SAM and BAM formats samtools-test - test files for the samtools package Changes: samtools (1.8-1) experimental; urgency=medium . * New upstream version * Poin

Accepted htslib 1.8-1 (source) into experimental

<debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: htslib-test - Test data for HTSlib libhts-dev - development files for the HTSlib libhts-private-dev - private development files for the HTSlib (use with care) libhts2- C libr

Accepted htsjdk 2.14.3+dfsg-1 (source) into experimental

med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: libhtsjdk-java - Java API for high-throughput sequencing data (HTS) formats libhtsjdk-java-doc - Documentation for the java HTSJDK library Closes: 894289 Changes: htsjdk (2.14.3+dfsg-1) experimen

Accepted gnumed-server 22.0-2 (source) into experimental

kag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: gnumed-server - medical practice management - server Changes: gnumed-server (22.0-2) experimental; urgency=medium . * d/control: drop flock from Depends since it is in essential package util-linux Ch

Accepted gnumed-client 1.7.0+dfsg-1 (source) into experimental

Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: gnumed-client - medical practice management - Client gnumed-client-de - medical practice management - Client for German users gnumed-common - medical practice managem

Accepted gnumed-server 22.0-1 (source) into experimental

kag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: gnumed-server - medical practice management - server Changes: gnumed-server (22.0-1) experimental; urgency=medium . * New upstream feature release * Depends: flock * Standards-Version: 4.1.3 *

Accepted libjloda-java 0.0+20180317-1 (source) into experimental

kag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: libjloda-java - Java library of data structures and algorithms for bioinformatics Closes: 893454 Changes: libjloda-java (0.0+20180317-1) experimental; urgency=medium . * New upstream commit Clo

Accepted rsem 1.3.0+dfsg-1 (source) into experimental

org> Changed-By: Andreas Tille <ti...@debian.org> Description: rsem - RNA-Seq by Expectation-Maximization Changes: rsem (1.3.0+dfsg-1) experimental; urgency=medium . * New upstream version * d/watch: - version=4 - xz compression * remove code copy of samtools-1.3

Accepted samtools 1.6-1 (source) into experimental

kag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: samtools - processing sequence alignments in SAM and BAM formats samtools-test - test files for the samtools package Changes: samtools (1.6-1) experimental; urgency=medium . [ Steffen Moeller ] * deb

Accepted bcftools 1.6-1 (source) into experimental

org> Changed-By: Andreas Tille <ti...@debian.org> Description: bcftools - genomic variant calling and manipulation of VCF/BCF files Changes: bcftools (1.6-1) experimental; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.1.2 Ch

Accepted htslib 1.6-1 (source) into experimental

<debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: htslib-test - Test data for HTSlib libhts-dev - development files for the HTSlib libhts-private-dev - private development files for the HTSlib (use with care) libhts2- C libr

Accepted gnumed-client 1.6.13+dfsg-1~exp (source all) into experimental

Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: gnumed-client - medical practice management - Client gnumed-client-de - medical practice management - Client for German users gnumed-common - medical practic

Accepted gnumed-server 21.13-1 (source all) into experimental

kag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: gnumed-server - medical practice management - server Changes: gnumed-server (21.13-1) experimental; urgency=medium . * New upstream version Checksums-Sha1: d936dd9ff19b651d5f4b6acf16a715e8b1fae449

Accepted htslib 1.4-3 (source all amd64) into experimental

med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: htslib-test - Test data for HTSlib libhts-dev - Development files for the HTSlib libhts2- C library for high-throughput sequencing data formats tabix - generic indexer for TAB-deli

Accepted libjloda-java 0.0+20170502-1 (source all) into experimental

kag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: libjloda-java - Java library of data structures and algorithms for bioinformatics Changes: libjloda-java (0.0+20170502-1) experimental; urgency=medium . * New upstream commit Ch

Accepted htslib 1.4-2 (source all amd64) into experimental

med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: htslib-test - Test data for HTSlib libhts-dev - Development files for the HTSlib libhts2- C library for high-throughput sequencing data formats tabix - generic indexer for TAB-deli

Accepted hmmer2 2.3.2+dfsg-2 (source amd64 all) into experimental

<debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: hmmer2 - profile hidden Markov models for protein sequence analysis hmmer2-doc - profile hidden Markov models for protein sequence analysis (docs) hmmer2-pvm - HMMER progr

Accepted hmmer2 2.3.2+dfsg-1 (source amd64 all) into experimental, experimental

<debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: hmmer2 - profile hidden Markov models for protein sequence analysis hmmer2-doc - profile hidden Markov models for protein sequence analysis (docs) hmmer2-pvm - HMMER progr

Accepted biosquid 1.9g+cvs20050121-9 (source amd64) into experimental

<debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: biosquid - utilities for biological sequence analysis libsquid-dev - biosquid headers and static library for biological sequence analy libsquid1 - biosquid dynamic library fo

Accepted flexbar 1:3.0.0-1 (source amd64) into experimental

kag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: flexbar- flexible barcode and adapter removal for sequencing platforms Changes: flexbar (1:3.0.0-1) experimental; urgency=medium . * New upstream version now at Github * cme fix dpkg-control * Build-Depend

Accepted htslib 1.4-1 (source all amd64) into experimental, experimental

med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: htslib-test - Test data for HTSlib libhts-dev - Development files for the HTSlib libhts2- C library for high-throughput sequencing data formats tabix - generic indexer for TAB-deli

Accepted gnumed-client 1.6.12+dfsg-1 (source all) into experimental

Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: gnumed-client - medical practice management - Client gnumed-client-de - medical practice management - Client for German users gnumed-common - medical practic

Accepted gnumed-server 21.12-1 (source all) into experimental

kag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: gnumed-server - medical practice management - server Changes: gnumed-server (21.12-1) experimental; urgency=medium . * New upstream version Checksums-Sha1: af535796a60c1e3647559ebc43253c2f6f57b72f

Accepted velvet 1.2.10+dfsg1-4 (source amd64 all) into experimental

Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: velvet - Nucleic acid sequence assembler for very short reads velvet-example - Example data for the Velvet sequence assembler velvet-long - Nucleic acid sequence assemb

Accepted tvc 5.0.3+dfsg-2 (source amd64) into experimental

kag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: tvc- genetic variant caller for Ion Torrent sequencing platforms Changes: tvc (5.0.3+dfsg-2) experimental; urgency=medium . * Team maintenance in Debian Med team * cme fix dpkg-control * debhelper 10 Ch

Accepted ariba 2.7.2+ds-1 (source amd64) into experimental

kag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: ariba - Antibiotic Resistance Identification By Assembly Changes: ariba (2.7.2+ds-1) experimental; urgency=medium . * Team upload. . [ Sascha Steinbiss ] * New upstream release. * Raise version

Accepted htslib 1.3.2-3 (source all amd64) into experimental

ian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: htslib-test - Test data for HTSlib libhts-dev - Development files for the HTSlib libhts1- C library for high-throughput sequencing data formats tabix - generic indexer for T

Accepted libvcflib 1.0.0~rc1+dfsg1-2 (source amd64) into experimental

Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: libvcflib-dev - C++ library for parsing and manipulating VCF files (development) libvcflib-tools - C++ library for parsing and manipulating VCF files (tools) libvcflib1 -

Accepted libsmithwaterman 0.0+20160702-2 (source amd64) into experimental

Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: libsmithwaterman-dev - determine similar regions between two strings or genomic sequence libsmithwaterman0 - determine similar regions between two string

Accepted fermi-lite 0.1-3 (source amd64) into experimental

kag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: fml-asm- tool for assembling Illumina short reads in small regions libfml-dev - development headers for libfml libfml0- library for assembling Illumina short reads in small regions Changes:

Accepted beast-mcmc 1.8.3+dfsg-1 (source all amd64) into experimental, experimental

Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: beast-mcmc - Bayesian MCMC phylogenetic inference beast-mcmc-doc - Bayesian MCMC phylogenetic inference - documentation beast-mcmc-example

Accepted mtj 0.9.14+dfsg-3 (source all) into experimental, experimental

ain...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: libmtj-java - Java library for developing numerical applications libmtj-java-doc - Java library for developing numerical applications (documentation Changes: mtj (0.9.14+dfsg-3) experimental; ur

Accepted netlib-java 0.9.3-2 (source all) into experimental, experimental

ain...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: libnetlib-java - collection of mission-critical software components for linear alg Changes: netlib-java (0.9.3-2) experimental; urgency=low . * Upload to main since preconditions are in main as well * debi

Accepted jlapack 0.8~dfsg-2 (source all) into experimental, experimental

ain...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: libjlapack-java - LAPACK numerical subroutines translated from their Fortran 77 sou Changes: jlapack (0.8~dfsg-2) experimental; urgency=medium . * Build using free f2j - so moving from contrib to main

Accepted f2j 0.8.1+dfsg-1 (source amd64 all) into experimental, experimental

kag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: f2j- Fortran to Java compiler libf2j-java - Java library port of Fortran numerical libraries Changes: f2j (0.8.1+dfsg-1) experimental; urgency=medium . * Remove non-free parts from the code and up