Re: More help for beast-mcmc needed (Was: Help with java package (beast-mcmc) needed)

2012-01-11 Thread Andreas Tille
On Wed, Jan 11, 2012 at 05:12:44PM +0100, Olivier Sallou wrote: > I also remark in beast.jar MANIFEST that there is a carriage return: > > Class-Path: /usr/share/beast-mcmc/beagle.jar /usr/share/java/jebl.jar > /u < there should not be a carriage return here > sr/share/java/jam.jar /usr/sha

Re: Help with java package (beast-mcmc) needed

2012-01-10 Thread Andreas Tille
On Tue, Jan 10, 2012 at 12:01:57PM +0100, Olivier Sallou wrote: > >> Usually, this kind of problem is due to the CLASSPATH not containing > >> jam.jar > > $ grep jam debian/rules > > export CLASSPATH := > > $(DEBJAR)/itext.jar:lib/beagle.jar:lib/mpj.jar:lib/org.boehn.kmlframework_20090320.jar:$(DE

Re: Help with java package (beast-mcmc) needed

2012-01-10 Thread Olivier Sallou
Le 1/10/12 10:59 AM, Andreas Tille a écrit : > Hi Sylvestre, > > On Tue, Jan 10, 2012 at 06:09:53AM +0100, Sylvestre Ledru wrote: >>> Exception in thread "main" java.lang.NoClassDefFoundError: >>> jam/console/ConsoleApplication >> Usually, this kind of problem is due to the CLASSPATH not contain

Re: Help with java package (beast-mcmc) needed

2012-01-10 Thread Andreas Tille
Hi Sylvestre, On Tue, Jan 10, 2012 at 06:09:53AM +0100, Sylvestre Ledru wrote: > > Exception in thread "main" java.lang.NoClassDefFoundError: > > jam/console/ConsoleApplication > Usually, this kind of problem is due to the CLASSPATH not containing > jam.jar $ grep jam debian/rules export CLASSPA

Re: Help with java package (beast-mcmc) needed

2012-01-10 Thread Sylvestre Ledru
Hi Andreas, Le dimanche 08 janvier 2012 à 21:42 +0100, Andreas Tille a écrit : > Hi, > $ logcombiner > Exception in thread "main" java.lang.NoClassDefFoundError: > jam/console/ConsoleApplication Usually, this kind of problem is due to the CLASSPATH not containing jam.jar Cheers, Sylvestre

Help with java package (beast-mcmc) needed

2012-01-08 Thread Andreas Tille
Hi, I tried building a package from beast and uploaded for simlicity this stuff to http://people.debian.org/~tille/packages/beast-mcmc-help-wanted/ It contains six executable files in /usr/bin. Three of them are starting nicely. These are beast-mcmc, beauti and loganalyser. However, the o