On Mon, 7 Jul 2008, Charles Plessy wrote:
Anyway, Maq had a nice advertisement in a recent review published in
Genome Research, and it is therefore definitely one of the programs we
must add to our collection before the end of the year. I just imported
a rudimentary packaging in our subversion
Le Tue, Jul 08, 2008 at 10:02:35AM +0200, Andreas Tille a écrit :
1. Renaming *.pl files
Lintian warns about files /usr/bin/*.pl
(script-with-language-extension)
and normally it would be cheap to rename these but in this specific
case we have a binary map and a
Le Tue, Jul 08, 2008 at 10:58:52AM +, [EMAIL PROTECTED] a écrit :
Author: plessy
Date: 2008-07-08 10:58:51 + (Tue, 08 Jul 2008)
New Revision: 2199
Added:
trunk/packages/io-lib/trunk/debian/
trunk/packages/io-lib/trunk/debian/README.Debian
On Tue, 8 Jul 2008, Charles Plessy wrote:
from the maq manpage, it seems that users are expected to be able to run
maq or maq.pl in command line, so they definitely will have to go to
/usr/bin. maq.pl is a pipeline that calls many maq programs (themselves
called through /usr/bin maq). If this
Le Tue, Jul 08, 2008 at 02:13:05PM +0200, Andreas Tille a écrit :
Thanks. I also had some trouble when I gave staden a try some time
ago and that I want to add the remark that we should definitely try to
settle down with one copy of io-lib inside Debian (either the separate
or the one whic
Hello Andreas,
I appreciate the problems with io_lib and the Staden Package, I really
do! It causes me no end of hassle too. Unfortunately like a lot of
things it's the usual fire-fighting scenario and never any time to
tidy up.
Thanks. I also had some trouble when I gave staden a try some
On Tue, 8 Jul 2008, James Bonfield wrote:
I appreciate the problems with io_lib and the Staden Package, I really
do! It causes me no end of hassle too. Unfortunately like a lot of
things it's the usual fire-fighting scenario and never any time to
tidy up.
... the usual thing we all suffer
On Tue, Jul 08, 2008 at 04:32:54PM +0200, Andreas Tille wrote:
Ideally I'd like to rewrite the entire staden build system to use
something like autoconf (although maybe one of the newer alternatives
that isn't such a dogs breakfast when it comes to dynamic
libraries).
Sounds good. I did
On Tue, 8 Jul 2008, James Bonfield wrote:
Maybe I should just give up and embrace the libtool abomination like
the rest of the planet! It probably now works properly on the few
remaining systems that anyone still supports.
When I said autoconf when talking about libraries I certainly also
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