Re: Debian Med Bioinformatics Sprint in Lübeck : post-install

2011-02-02 Thread Andreas Tille
Hi Steffen, I took the freedom to publish your (actually not that private) mail to the Debian Med mailing list because on one hand it is interesting in general for the list on the other hand we are responsible to give a report to the Debian community which was supporting our sprint. On Wed, Feb

Re: Debian Med Bioinformatics Sprint in Lübeck : post-install

2011-02-02 Thread Pjotr Prins
I also enjoyed the conf. One result is a further collaboration on EMBOSS bindings to Perl, Python, Ruby and the JVM. Cool - but what is rq? I can't find it in SVN nor on our tasks page. Brilliant tool for parallelized running of programs. Like Gridengine, or Torque, but *much* simpler to set

Re: Debian Med Bioinformatics Sprint in Lübeck : post-install

2011-02-02 Thread Andreas Tille
On Wed, Feb 02, 2011 at 10:26:27AM +0100, Pjotr Prins wrote: I also enjoyed the conf. One result is a further collaboration on EMBOSS bindings to Perl, Python, Ruby and the JVM. Fine. Cool - but what is rq? I can't find it in SVN nor on our tasks page. Brilliant tool for parallelized

Re: Debian Med Bioinformatics Sprint in Lübeck : post-install

2011-02-02 Thread Andreas Tille
Meta-remark: I removed those e-mail addresses where I know people are reading Debian Med list (specifically lea...@debian.org who was interested in the general resume but not in detailed discussion). I would be happy if we could move the discussion to debian-med@lists.debian.org without the long

Re: Debian-Med 'sprint' in Travemuende

2011-02-02 Thread Andreas Tille
On Wed, Feb 02, 2011 at 11:53:17AM +, Tony Travis wrote: A very significant outcome of the meeting is that Bio-Linux will make much greater use of Debian-Med in future. One word to the native speakers. The Debian Edu team had a long discussion and consultation with native English

Source code for Gblocks available?

2011-02-02 Thread Andreas Tille
Hi Jose, I'm writing on behalf of the Debian Med project which tries to assemble Free Software for bio-medical research in a ready to install form inside the Debian GNU/Linux system (and thus as a consequence into Ubuntu). I have got a hint that your program GBlocks[1] is quite popular and I'm

Source code for FigTree available?

2011-02-02 Thread Andreas Tille
Hi FigTree, I'm writing on behalf of the Debian Med project which tries to assemble Free Software for bio-medical research in a ready to install form inside the Debian GNU/Linux system (and thus as a consequence into Ubuntu). I have got a hint that your program FigTree[1] is quite popular and

Volunteer seeked for checking what Gentoo packaged software we should include

2011-02-02 Thread Andreas Tille
Hi, I just stumbled upon http://gentoo-overlays.zugaina.org/dberkholz/sci-biology.html.en We are now seeking for a volunteer who might browse this list and compare it with our tasks page to find out what we should put on our todo list. I also added this link to the Wiki-TODO list which

Re: Debian Med Bioinformatics Sprint in Lübeck : post-install

2011-02-02 Thread Tim Booth
Hi All, I'll echo Steffen and Andreas' comments that I really enjoyed the meeting and the amount of focused work and interaction going on was fantastic. I'll make sure to finish my homework from the meeting but right now I'm back to trying to sort out all sorts of things at work. My main points

Re: Debian Med Bioinformatics Sprint in Lübeck : post-install

2011-02-02 Thread Andreas Tille
On Wed, Feb 02, 2011 at 06:19:57PM +, Tim Booth wrote: I generally have an aversion to mailing list servers that create a public mail archive with e-mail addresses unobfuscated, but as I see the damage is now done and my address is on there for all to spam I may as well join. Ahh, hmm, I

ITP: probalign -- multiple sequence alignment using partition function posterior probabilities

2011-02-02 Thread Andreas Tille
Hi, I just finished packaging. If nobody insists I'd go for an upload tomorrow. Kind regards Andreas. - Forwarded message from andr...@an3as.eu - From: andr...@an3as.eu To: Debian Bug Tracking System sub...@bugs.debian.org Subject: ITP: probalign -- multiple sequence alignment