Re: [Soap] Source code for SOAPdenovo available?

2011-02-11 Thread Andreas Tille
Hi, I have no idea what you mean with "using your's resource to compile the latest version"? If this is a SOAP denovo internal discussion I'll keep on waiting but if I can do something to help please be more verbose. In Debian we have autobuilder which are compiling for several architectures (in

Bug#612953: ITP: jam-lib -- Java applications look and behave like native applications

2011-02-11 Thread Andreas Tille
Hi, I have injected packaging for lib-jam. As stated below it is in Debian Med repository as precondition for Java Evolutionary Biology Library (to be packaged soon). I would like to let somebody from Java team to have a look at it (you can get the upstream tarball by either "make -f debian/rule

Re: Source code for SOAPdenovo available?

2011-02-11 Thread George Marselis
hey guys, I have to hand it to the soap denovo people. Ruibang Luo actually spent some of his precious time to help me out at KAUST, where we have a pretty peculiar setup: Power7 series with 512GB of RAm and ugh, RHEL 5.4. It would be godsend if they would publish the binary on their site or publi

Re: Bug#612625: ITP: libtecla -- a command-line editing library

2011-02-11 Thread Scott Christley
On Feb 11, 2011, at 8:23 AM, Michael Banck wrote: > On Wed, Feb 09, 2011 at 10:18:15AM -0600, Scott Christley wrote: >> Description : Tecla is a command-line editing library >> >> The tecla library provides UNIX and LINUX programs with interactive >> command line editing facilities, similar

Re: libtecla package

2011-02-11 Thread Michael Banck
On Fri, Feb 11, 2011 at 03:25:02PM +0100, Andreas Tille wrote: > On Fri, Feb 11, 2011 at 03:21:48PM +0100, Michael Banck wrote: > > No, I think the issue is that the patch is patching debian/Makefile.in - > > this looks odd. > > It's just a wrong patch file entry, believe me. Right, I see. Mich

Re: Bug#612625: ITP: libtecla -- a command-line editing library

2011-02-11 Thread Andreas Tille
On Fri, Feb 11, 2011 at 03:23:48PM +0100, Michael Banck wrote: > Hi, > > On Wed, Feb 09, 2011 at 10:18:15AM -0600, Scott Christley wrote: > > Description : Tecla is a command-line editing library > > > > The tecla library provides UNIX and LINUX programs with interactive > > command line edit

Re: libtecla package

2011-02-11 Thread Andreas Tille
On Fri, Feb 11, 2011 at 03:21:48PM +0100, Michael Banck wrote: > No, I think the issue is that the patch is patching debian/Makefile.in - > this looks odd. It's just a wrong patch file entry, believe me. > If upstream does not have a Makefile, the patch should create it in the > upstream directo

Re: Bug#612625: ITP: libtecla -- a command-line editing library

2011-02-11 Thread Michael Banck
Hi, On Wed, Feb 09, 2011 at 10:18:15AM -0600, Scott Christley wrote: > Description : Tecla is a command-line editing library > > The tecla library provides UNIX and LINUX programs with interactive > command line editing facilities, similar to those of the UNIX tcsh > shell. In addition to sim

Re: libtecla package

2011-02-11 Thread Michael Banck
On Fri, Feb 11, 2011 at 10:02:33AM +0100, Andreas Tille wrote: > On Thu, Feb 10, 2011 at 03:44:11PM -0600, Scott Christley wrote: > > E: libtecla source: patch-modifying-debian-files add-destdir.patch > > debian/Makefile.in > > You should probably put the following text into your ~/.quiltrc > >

Source code for SOAPdenovo available?

2011-02-11 Thread Andreas Tille
Hi, I'm writing on behalf of the Debian Med project which tries to assemble Free Software for bio-medical research in a ready to install form inside the Debian GNU/Linux system (and thus as a consequence into Ubuntu). A colleague of mine started using SOAPdenovo and thus I'm considering it a good

Source code for ClonalFrame available?

2011-02-11 Thread Andreas Tille
Hi Xavier, [just BCCing you to not uncover your email on a public mailing list archive because you took means to hide it on your contacts page] I'm writing on behalf of the Debian Med project which tries to assemble Free Software for bio-medical research in a ready to install form inside the Debi

Re: vienna-rna is almost ready

2011-02-11 Thread Manuel Prinz
Am Freitag, den 11.02.2011, 09:33 +0100 schrieb Andreas Tille: > I'd suggest the packaging list > debian-med-packag...@lists.alioth.debian.org for further discussion > because it might be to specific for this general list but enables > me to watch your discussion (because some bits of code are mine

Re: libtecla package

2011-02-11 Thread Andreas Tille
On Thu, Feb 10, 2011 at 03:44:11PM -0600, Scott Christley wrote: > I just committed the initial packaging for libtecla, ITP bug #612625. I > would be happy if somebody could review my package. > > When I run lintian I get these messages, I kinda understand the errors but am > not sure how to re

Re: vienna-rna is almost ready

2011-02-11 Thread Andreas Tille
On Thu, Feb 10, 2011 at 09:55:55PM +0100, Manuel Prinz wrote: > - Please add DEP3 headers [1] to the patches. This helps others to >gain information about the patch status. (What does it do? Was it >forwarded to upstream?) This is especially important in patch file >naview_copyright.pa