Re: MIRA, BALL, or svn vs git

2011-03-09 Thread Charles Plessy
Le Wed, Mar 09, 2011 at 08:46:29PM +0300, George Marselis a écrit : > yeah, that was my doing, but i sorta abandoned the project, because I > could not create a perfect package, and i shied away from asking on > the list in fear of sounding like a fool. > > if i can help with anything, let me know

Re: Looking for a DD to upload mummy

2011-03-09 Thread Andreas Tille
Hi Mathieu, On Tue, Mar 08, 2011 at 02:36:49PM +0100, Mathieu Malaterre wrote: > I am looking for a debian-med DD to upload the mummy package. It is > package in the debian-med svn as usual. And I uploaded a signed copy > on mentors: I have checked out SVN and obtained the source via get-orig-s

Re: seq-gen needs review and a sponsor

2011-03-09 Thread Andreas Tille
On Wed, Mar 09, 2011 at 10:40:39AM +0100, Alex Mestiashvili wrote: > seq-gen seems to be ready , but I have some doubts about the copyright file > and correct license name ( GPL2 GPL3 , non gpl at all :) ) Definitely non-GPL. Just have a look into /usr/share/common-licenses/BSD :-) I'd als

Re: SOAPdenovo is GPL v3

2011-03-09 Thread Andreas Tille
Hi George, On Wed, Mar 09, 2011 at 08:49:32PM +0300, George Marselis wrote: > to make up for some past sins with mira, I thought i would check with > the soapdenovo site. > > it is now under the GPLv3 http://soap.genomics.org.cn/soapdenovo.html Great. I just added it to the tasks page - please

Re: MIRA, BALL, or svn vs git

2011-03-09 Thread Andreas Tille
On Wed, Mar 09, 2011 at 08:46:29PM +0300, George Marselis wrote: > yeah, that was my doing, but i sorta abandoned the project, because I > could not create a perfect package, There is no such thing like a perfect package - but we can try to reach some convergence to such a thing together. > and i

Re: MIRA, BALL, or svn vs git

2011-03-09 Thread Andreas Tille
On Wed, Mar 09, 2011 at 04:21:21PM +0100, Steffen Möller wrote: > Well, we need to cross-check with Bio-Linux, still. But I have > some confidence that the current SVN version is as good as the > one in git. The two efforts now need to be merged. Yes - and because I do not feel competent to do thi

SOAPdenovo is GPL v3

2011-03-09 Thread George Marselis
hey guys, to make up for some past sins with mira, I thought i would check with the soapdenovo site. it is now under the GPLv3 http://soap.genomics.org.cn/soapdenovo.html Well done to the soapdenovo team and andreas for writing that email. Best Regards, George. -- To UNSUBSCRIBE, email to

Re: MIRA, BALL, or svn vs git

2011-03-09 Thread George Marselis
yeah, that was my doing, but i sorta abandoned the project, because I could not create a perfect package, and i shied away from asking on the list in fear of sounding like a fool. if i can help with anything, let me know Best Regards, George On Wed, Mar 9, 2011 at 3:01 PM, Steffen Möller wrote

Re: MIRA, BALL, or svn vs git

2011-03-09 Thread Steffen Möller
On 03/09/2011 04:28 PM, Andreas Tille wrote: > On Wed, Mar 09, 2011 at 11:46:35PM +0900, Charles Plessy wrote: > >> for the prospective packages, I think that the best is to document them as >> early as possible in the tasks files, >> > Yes! > > Currently mira is mentioned on the tasks page

Re: MIRA, BALL, or svn vs git

2011-03-09 Thread Andreas Tille
On Wed, Mar 09, 2011 at 11:46:35PM +0900, Charles Plessy wrote: > for the prospective packages, I think that the best is to document them as > early as possible in the tasks files, Yes! Currently mira is mentioned on the tasks pages tp be in SVN and there are files in SVN. Could you please fix t

Re: MIRA, BALL, or svn vs git

2011-03-09 Thread Charles Plessy
Dear Steffen, for the prospective packages, I think that the best is to document them as early as possible in the tasks files, and to make debian-med-packag...@lists.alioth.debian.org the owner of their ITP bug, where the VCS should be indicated. I do not know how other teams organise themselves.

Re: MIRA, BALL, or svn vs git

2011-03-09 Thread Tony Travis
On 09/03/11 12:01, Steffen Möller wrote: Dear all, a week ago or so I had worked on a first (so I had thought) package for the assembler MIRA. I invested a couple of hours into it and eventually got it to compile. Only today I then learned that MIRA is also on git: http://git.debian.org/?p=debia

MIRA, BALL, or svn vs git

2011-03-09 Thread Steffen Möller
Dear all, a week ago or so I had worked on a first (so I had thought) package for the assembler MIRA. I invested a couple of hours into it and eventually got it to compile. Only today I then learned that MIRA is also on git: http://git.debian.org/?p=debian-med/mira.git;a=summary . The effort is no

seq-gen needs review and a sponsor

2011-03-09 Thread Alex Mestiashvili
Hello , seq-gen seems to be ready , but I have some doubts about the copyright file and correct license name ( GPL2 GPL3 , non gpl at all :) ) Could you please have a look on it . Thank you in advance , Alex -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "un