Re: BLAST+ speed & build issues

2011-08-02 Thread Olivier Sallou
Hi Tim, regarding speed, I don't know the reason of the difference between static and dynamic linking here. When I created the package I 've chosen the dynamic solution to reduce the size of the binary, while making the library available for other software linkage. Creating a "static" package would

Re: fis-gtm

2011-08-02 Thread Thorsten Alteholz
Hi Bhaskar, On Mon, 25 Jul 2011, Bhaskar, K.S wrote: For Linux, root.root is preferred and bin.bin is acceptable. Also, the norm should be to allow world execution of GT.M. ok, finally I have got it ;-). [KSB2] I don't understand the part about calling the configure script twice. Oh, I th

BLAST+ speed & build issues

2011-08-02 Thread Tim Booth
Hi Olivier and Aaron, I've been playing around with BLAST+, trying to tackle one fairly simple but unimportant issue and one more complex and problematic issue. The easy one first: In the build log (on Launchpad) I see that during the test phase of the build there are various attempts to connect

Re: circos packaging

2011-08-02 Thread Olivier Sallou
hi Charles, I am dealing with upstream fonts author and upstream author to try to fix this. For pointers font, author should be ok to relicense. For shapes and circles, I don't think so. So either upstream author can use other fonts, or I should package those independently in non-free and put them