Re: cellprofiler

2011-12-09 Thread Mathieu Malaterre
Hi Ivo, On Fri, Dec 9, 2011 at 10:45 AM, Ivo Maintz i...@maintz.de wrote: after spending some time by packaging cellprofiler myself, I discovered your (not finished) package. What do you think about merging our approaches? I mainly got it working (in fact, cellprofiler is starting, but I

Dental drivers

2011-12-09 Thread Eric Maeker
Hi all, I'm watching for some drivers around the web for dental specific hardware drivers. I've found one driver for a XRay sensor. Unfortunately, if the source is published, the license of the code is not defined by the author. I'm in discussion with him. It will be really interesting to have a

Re: cellprofiler

2011-12-09 Thread Steffen Möller
Ivo, Mathieu, On 12/09/2011 10:50 AM, Mathieu Malaterre wrote: On Fri, Dec 9, 2011 at 10:45 AM, Ivo Maintz i...@maintz.de wrote: after spending some time by packaging cellprofiler myself, I discovered your (not finished) package. What do you think about merging our approaches? I mainly got it

Re: Dental drivers

2011-12-09 Thread Andreas Tille
On Fri, Dec 09, 2011 at 10:43:40AM +0100, Eric Maeker wrote: It will be really interesting to have a medical specific hardware drivers in Debian Med tasks. Even if this task will be empty for now. While I agree that there is some potential I do not think that creating completely empty

Re: cellprofiler

2011-12-09 Thread Andreas Tille
Hi Ivo, On Fri, Dec 09, 2011 at 10:50:11AM +0100, Mathieu Malaterre wrote: On Fri, Dec 9, 2011 at 10:45 AM, Ivo Maintz i...@maintz.de wrote: after spending some time by packaging cellprofiler myself, I discovered your (not finished) package. While Mathieu took over the technical answer I

Re: cellprofiler

2011-12-09 Thread Thouis Jones
On Fri, Dec 9, 2011 at 10:50, Mathieu Malaterre mathieu.malate...@gmail.com wrote: The battle was raging on debian-python, about how best to solve this issue. So I am very interested in how you manage to get it working. As a side note Thouis is acutally working on patching upstream to

Sponsor for imagevis3D

2011-12-09 Thread Mathieu Malaterre
Hi all, I am looking for a sponsor for imagevis3d. It is located in svn for debian-med/trunk/packages/imagevis3d. It builds fine on sid, I did upload it on mentors this morning: http://mentors.debian.net/package/imagevis3d I am in discussion with upstream to have a better mechanism to

Re: Dental drivers

2011-12-09 Thread Mathieu Malaterre
On Fri, Dec 9, 2011 at 11:06 AM, Andreas Tille andr...@an3as.eu wrote: On Fri, Dec 09, 2011 at 10:43:40AM +0100, Eric Maeker wrote: It will be really interesting to have a     medical specific hardware drivers in Debian Med tasks. Even if this task will be empty for now. While I agree that

Re: BEAGLE Genetic Analysis for Debian Med

2011-12-09 Thread Tim Booth
Hi Andreas, I'm going ahead and packaging the BEAGLE library as it is now open source (GPL3) and available on Google Code (http://code.google.com/p/beagle-lib). I'm doing this as a dependency for the latest MrBayes. I see you wanted to have it as a component of BEAST but I wasn't planning on

Re: cellprofiler

2011-12-09 Thread Ivo Maintz
Hi, after spending some time by packaging cellprofiler myself, I discovered your (not finished) package. What do you think about merging our approaches? I mainly got it working (in fact, cellprofiler is starting, but I didn't made deeper tests of it). wow !!! very very impressive, how

Re: new member introduction

2011-12-09 Thread Nick James
Hi Andreas, On 08/12/11 21:56, Andreas Tille wrote: Hi again, On Thu, Dec 08, 2011 at 10:02:13PM +0100, Andreas Tille wrote: Hi Nick, On Thu, Dec 08, 2011 at 05:24:51PM +, Nick James wrote: It is what the Ensembl team use internally for batch submission. Iven in this case the script

Re: Dental drivers

2011-12-09 Thread Andreas Tille
On Fri, Dec 09, 2011 at 12:54:03PM +0100, Mathieu Malaterre wrote: On Fri, Dec 9, 2011 at 11:06 AM, Andreas Tille andr...@an3as.eu wrote: On Fri, Dec 09, 2011 at 10:43:40AM +0100, Eric Maeker wrote: It will be really interesting to have a     medical specific hardware drivers in

Re: cellprofiler

2011-12-09 Thread Mathieu Malaterre
Steffen, On Fri, Dec 9, 2011 at 11:03 AM, Steffen Möller steffen_moel...@gmx.de wrote: Ivo, Mathieu, On 12/09/2011 10:50 AM, Mathieu Malaterre wrote: On Fri, Dec 9, 2011 at 10:45 AM, Ivo Maintz i...@maintz.de wrote: after spending some time by packaging cellprofiler myself, I discovered

Re: new member introduction

2011-12-09 Thread Andreas Tille
On Fri, Dec 09, 2011 at 01:00:48PM +, Nick James wrote: W: libensembl-core-perl: executable-not-elf-or-script usr/share/ensembl/ensembl/misc-scripts/alternative_splicing/AltSplicingToolkit/src/util/StringUtil.h W: libensembl-core-perl: executable-not-elf-or-script

Re: Dental drivers

2011-12-09 Thread Karsten Hilbert
On Fri, Dec 09, 2011 at 02:06:50PM +0100, Andreas Tille wrote: On Fri, Dec 09, 2011 at 12:54:03PM +0100, Mathieu Malaterre wrote: On Fri, Dec 9, 2011 at 11:06 AM, Andreas Tille andr...@an3as.eu wrote: On Fri, Dec 09, 2011 at 10:43:40AM +0100, Eric Maeker wrote: It will be really

Re: Sponsor for imagevis3D

2011-12-09 Thread Mathieu Malaterre
As usual thanks Andreas for taking care of this. Quick answer: I am always building using pbuilder. My pbuilder was updated this morning. So I'll have to give up on this for now. I might be missing something obvious here. I'll fix the get-orig-source file. Take care On Fri, Dec 9, 2011 at 2:53

Re: Dental drivers

2011-12-09 Thread Johan Henriksson
Do you mean in the context of micromanager as a dependency (like libc6, python, perl or whatever any package might depend from) or because libpvcam *itself* has some relevance for medical care. The package is there and you can use it in micromanager - but we should not collect any random

Re: Dental drivers

2011-12-09 Thread Eric Maeker
Le 9 décembre 2011 14:44, Karsten Hilbert karsten.hilb...@gmx.net a écrit : On Fri, Dec 09, 2011 at 02:06:50PM +0100, Andreas Tille wrote: On Fri, Dec 09, 2011 at 12:54:03PM +0100, Mathieu Malaterre wrote: On Fri, Dec 9, 2011 at 11:06 AM, Andreas Tille andr...@an3as.eu wrote: On Fri, Dec

Re: new member introduction

2011-12-09 Thread Nick James
Hi Andreas, Thanks for the instructions. One question, should I be checking out the source with write permission: *svn co* |svn+ssh://u...@svn.debian.org/svn/debian-med/trunk/... in which case do I need a username / password? And commit changes myself. Or just for reading: |*svn co*

Re: cellprofiler

2011-12-09 Thread Ivo Maintz
Mathieu Malaterre mathieu.malate...@gmail.com schrieb : On Fri, Dec 9, 2011 at 1:37 PM, Ivo Maintz i...@maintz.de wrote: Not so impressive, I think... I didn't notice the bug before... And I MUST do a 'svn up' before doing something relevant changes! So I didn't see your

Re: new member introduction

2011-12-09 Thread Andreas Tille
On Fri, Dec 09, 2011 at 04:56:11PM +0100, Steffen Möller wrote: On 12/09/2011 02:02 PM, Andreas Tille wrote: On Fri, Dec 09, 2011 at 11:55:41AM +, Nick James wrote: I'm happy to look into other things that you are not sure if they are needed. A major reason for Ensembl to remain in the

Re: Sponsor for imagevis3D

2011-12-09 Thread Andreas Tille
On Fri, Dec 09, 2011 at 03:50:58PM +0100, Mathieu Malaterre wrote: On Fri, Dec 9, 2011 at 2:53 PM, Andreas Tille andr...@an3as.eu wrote: make[4]: Entering directory `/tmp/buildd/imagevis3d-2.1.0/Tuvok/IO/expressions' How did you get the source code ? I can read a imagevis3d-2.1.0 from