Re: Problem using ./setup-repository: "gbp:error: /path/to/foobar.git is not a git repository"

2012-01-27 Thread Charles Plessy
Le Wed, Jan 25, 2012 at 07:39:04PM +0100, Alex Mestiashvili a écrit : > > taken from http://pkg-perl.alioth.debian.org/git.html > almost the same is written in the debian-med policy but I liked the way > it is written here :) Hi all, please do not hesitate to suggest improvements for the wording

Re: Initial Grinder package

2012-01-27 Thread Charles Plessy
Le Fri, Jan 27, 2012 at 03:01:21PM +0900, Charles Plessy a écrit : > > I reviewed your package, and will upload it shortly after updating the > format of its copyright file. … I missed the copyright of Adam Kennedy, and other copyrights as not all files under /inc are part of Module::Build. Flor

Re: [med-svn] r9384 - trunk/packages/fis-gtm/fis-gtm-initial/trunk/debian

2012-01-27 Thread Luis Ibanez
On Fri, Jan 27, 2012 at 4:01 PM, Andreas Tille wrote: > > > Anyway, most of the questions that come up now have been discussed > > some time ago when I started to work on the package. So it might be > > really helpful to browse the archive. > > Hah, more work for the student, cool. Luis, what ab

Re: [med-svn] r9384 - trunk/packages/fis-gtm/fis-gtm-initial/trunk/debian

2012-01-27 Thread Andreas Tille
On Fri, Jan 27, 2012 at 08:00:08PM +0100, Thorsten Alteholz wrote: > > Yes, but I assumed that we only wanted to have one -initial package. > So it should contain both bootstrap tar files for amd64 and i386. > Depending on the architecture of the buildd only one is really used. Ahh, OK. But does

Re: How Debian Packaging practices could apply to VistA maintenance and distribution

2012-01-27 Thread Bhaskar, K.S
On 01/27/2012 02:07 PM, Thorsten Alteholz wrote: On Wed, 25 Jan 2012, Bhaskar, K.S wrote: A VistA Debian package is like a Linux installer ISO image. It's a tool that will let you create new VistA environments on your computer, So we only need one VistA Debian package, that contains just

Re: [MoM] Packaging fis-get

2012-01-27 Thread Thorsten Alteholz
On Wed, 25 Jan 2012, Andreas Tille wrote: This is because Thorsten decided to move the complete tarball straight into the *.deb package which is a very untypical decision and I was reasoning about this several times in this thread. I hope I answered everything satisfactorily (I have to catch

Re: How Debian Packaging practices could apply to VistA maintenance and distribution

2012-01-27 Thread Thorsten Alteholz
On Wed, 25 Jan 2012, Bhaskar, K.S wrote: [KSB] Are there packages that are (for example) pure shell scripts so that there is no difference between a source package and a binary package? A VistA Debian package would be like that. No, the source package always contains information on how to b

Re: [MoM] Packaging fis-get

2012-01-27 Thread Thorsten Alteholz
On Tue, 24 Jan 2012, Luis Ibanez wrote: Then went into the directory: cd debian-med/trunk/packages/fis-gtm/ cd fis-gtm-initial/trunk and got the source code with the command: make -f debian/rules get-orig-source Ok, let me introduce my workflow here: After doing get-orig-sour

Re: How Debian Packaging practices could apply to VistA maintenance and distribution

2012-01-27 Thread Thorsten Alteholz
On Wed, 25 Jan 2012, Bhaskar, K.S wrote: A VistA Debian package is like a Linux installer ISO image. It's a tool that will let you create new VistA environments on your computer, So we only need one VistA Debian package, that contains just this 'installer' and everything else is done by KID

Re: [med-svn] r9384 - trunk/packages/fis-gtm/fis-gtm-initial/trunk/debian

2012-01-27 Thread Thorsten Alteholz
On Mon, 23 Jan 2012, Andreas Tille wrote: Just explaining my motivation - not insisting that this was correct: We are currently talking about / working on the initial package to bootstrap a real fid-gtm package. Yes, but I assumed that we only wanted to have one -initial package. So it shou

Re: Bug#657644: wcstools and emboss: error when trying to install together

2012-01-27 Thread Andreas Tille
Hi Ole, On Fri, Jan 27, 2012 at 06:41:36PM +0100, Ralf Treinen wrote: > Here is a list of files that are known to be shared by both packages > (according to the Contents file for sid/amd64, which may be > slightly out of sync): > > /usr/bin/remap > > This bug has been filed against both packag

Bug#657633: ITP: libpal-java -- Phylogenetic Analysis Library

2012-01-27 Thread Andreas Tille
Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: libpal-java Version : 1.5.1 Upstream Author : Matthew Goode * URL : http://www.cebl.auckland.ac.nz/pal-project/ * License : LGPL-2.1 Programming Lang: Java Description : Phylogenetic

Hmmer2 conflicting Hmmer3

2012-01-27 Thread Andreas Tille
Hi, at the Debian Med sprint Laszlo Kajan pointed out to me that Hmmer2 and Hmmer3 are different enough that a simple upgrade of the packages will break applications of users. Moreover, the majority of users is just using Hmmer2 and we should continue to provide this package instead of simply rep

Re: Relation of 'Depends' and 'Imports' from R/CRAN to 'Depends' in 'debian/control'

2012-01-27 Thread Andreas Tille
On Wed, Jan 25, 2012 at 11:09:02AM -0500, Carlos Borroto wrote: > > I will upload a first draft for all the packages I'm building today. > I'm using pbuilder through git-buildpackage to be sure I'm getting all > dependencies right. > > Regarding my question, it was more to see if this was a known

Re: Wishlist for the sprinters.

2012-01-27 Thread Andreas Tille
On Fri, Jan 27, 2012 at 11:07:38AM +0900, Charles Plessy wrote: > I wish an excellent sprint meeting to everybody. It just came to my mind > that I > could try to make a wish in case some Java experts are around. Cool that you care for our todo list - it was terribly short and I was afraid beco

Bug#657585: ITP: phy-spread -- analyze and visualize phylogeographic reconstructions

2012-01-27 Thread Andreas Tille
Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: phy-spread Version : 1.0.2 Upstream Author : Filip Bielejec * URL : http://www.kuleuven.be/aidslab/phylogeography/SPREAD.html * License : LGPL-3+ Programming Lang: Java Description :

Bug#657584: ITP: libkmlframework-java -- library/framework for generating Google Earth KML

2012-01-27 Thread Andreas Tille
Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: libkmlframework-java Version : 0.0.20090718 Upstream Author : Eivind Bøhn * URL : http://code.google.com/p/kmlframework/ * License : BSD Programming Lang: Java Description : library/