General solution for name space pollution issues

2012-05-15 Thread Andreas Tille
tags 661519 pending thanks Hi, I commited in SVN for PAML a solution which moves all binaries to /usr/lib/debian-med/bin and symlinked all but the evolver binary to /usr/bin. Evolver is in /usr/bin symlinked to paml-evolver. I'm quite uncertain about the choice of the prefix and whether

Re: General solution for name space pollution issues

2012-05-15 Thread Julien Cristau
On Tue, May 15, 2012 at 13:42:38 +0200, Andreas Tille wrote: For the moment I would like to draw your attention to the other part of the solution I would like to suggest: Tweaking the PATH for Debian Med users: 1. Make paml Depends: med-config 2. Let med-config drop a script in

Re: General solution for name space pollution issues

2012-05-15 Thread Andreas Tille
Hi Julien, On Tue, May 15, 2012 at 01:57:08PM +0200, Julien Cristau wrote: On Tue, May 15, 2012 at 13:42:38 +0200, Andreas Tille wrote: What do you think? I think it's both overengineered and not an acceptable solution, fwiw. can you please be more verbose on the not an acceptable

Preparing the new freemedforms-project upstream 0.7.2

2012-05-15 Thread Eric MAEKER
Hi all, I've updated the svn debian files for the new upcoming 0.7.2 version. It is a draft code. I still need to make some tests on the packages. I'll ping the list when the source package will be updated. Thanks for your review anyway. - Eric Maeker, MD (Fr) http://www.freemedforms.com :

Re: Preparing the new freemedforms-project upstream 0.7.2

2012-05-15 Thread Andreas Tille
Hi Eric, On Tue, May 15, 2012 at 02:41:01PM +0200, Eric MAEKER wrote: I've updated the svn debian files for the new upcoming 0.7.2 version. It is a draft code. I still need to make some tests on the packages. I'll ping the list when the source package will be updated. Fine. Thanks for

Re: netcdf accepted / resume work on bioformats

2012-05-15 Thread Josh Moore
All, Sorry for the long pause. Finally got around to discussing with the team today[1]. On May 4, 2012, at 2:41 PM, Mathieu Malaterre wrote: Ok, netcdf has been -painfully- accepted in debian main I can resume work on bioformats. On Wed, Apr 11, 2012 at 11:31 AM, Josh Moore

Re: netcdf accepted / resume work on bioformats

2012-05-15 Thread Andreas Tille
On Tue, May 15, 2012 at 04:13:27PM +0200, Josh Moore wrote: BTW, JAI Image I/O is also needed for dcm4che which would be really nice to have. If anybody knows whom to bother for a free license for Image I/O this would be *really* cool ... The fork that we maintain [2] is derived from

Re: General solution for name space pollution issues

2012-05-15 Thread Charles Plessy
Le Tue, May 15, 2012 at 01:42:38PM +0200, Andreas Tille a écrit : I commited in SVN for PAML a solution which moves all binaries to /usr/lib/debian-med/bin and symlinked all but the evolver binary to /usr/bin. Evolver is in /usr/bin symlinked to paml-evolver. I'm quite uncertain