Hi Jim,
On Wed, Feb 26, 2014 at 10:33:59PM -0800, Jim Kent wrote:
> I'm glad you isolated it to the -O2.
:-)
> I don't think there's a super easy way to cut pslCheck out of the whole
> 1,200,000 UCSC genomics source tree.
For the moment I simply disabled this check. I guess it is also this
way
On Thu, 27 Feb 2014, Matthew McCormick wrote:
> >> @Yaroslav, the script we use for creating the ITK tarballs [3] may be
> >> a useful reference for creating an ANTS data tarball.
> > Thank you Matthew, we might make use of its parts... but while at it I
> > would like to raise a concern actually
On Wed, Feb 26, 2014 at 11:58 PM, Yaroslav Halchenko
wrote:
>
>> @Yaroslav, the script we use for creating the ITK tarballs [3] may be
>> a useful reference for creating an ANTS data tarball.
>
> Thank you Matthew, we might make use of its parts... but while at it I
> would like to raise a concern
On Wed, 26 Feb 2014, Matthew McCormick wrote:
> >From what I can see (find ANTS -name '*.md5'), most if not all of the
> data is located in the slicer.kitware.com/BRAINSTools Midas Community
> [1].
> @Hans, could a license notice be placed in the Info tab? Something
> like Creative Commons Attr
On Wed, Feb 26, 2014 at 6:06 PM, Gert Wollny wrote:
> To document a bit where I stand with this endeavor: so far I hit three
> problems,
>
> the first is a cmake bug:
>
>http://public.kitware.com/Bug/view.php?id=13794,
>
> Indicator: all python test fail.
> The workaround is to set the preferr
Hi Gert,
> On Wed, 2014-02-26 at 14:03 -0500, Matthew McCormick wrote:
>> Thanks for your work on this!
> Actually, Yaroslav did the main bulk of the work, I'm just polishing the
> package because I need ANTs now and I want to install it the true Debian
> way :)
Cool :-)
>
>> I've added in CC t
To document a bit where I stand with this endeavor: so far I hit three
problems,
the first is a cmake bug:
http://public.kitware.com/Bug/view.php?id=13794,
Indicator: all python test fail.
The workaround is to set the preferred python version on the cmake
command line.
The second one se
Hi Matt,
On Wed, 2014-02-26 at 14:03 -0500, Matthew McCormick wrote:
> Thanks for your work on this!
Actually, Yaroslav did the main bulk of the work, I'm just polishing the
package because I need ANTs now and I want to install it the true Debian
way :)
> I've added in CC the core ANTs develope
Hi Gert,
Thanks for your work on this!
I saw your issue in the ITK bug tracker regarding downloading files
from the internet. I have a big queue, but I'll try to get a patch in
the next week. I have made a cognisant effort so that the ITK
tarballs will not download any files in the default CMak
Le 26/02/2014 16:07, Emilien Klein a écrit :
> Hi Mentors,
>
> TLDR: in order to execute a command as another user, should `sudo` or
> `su --command` be used?
>
>
> I'd like to get your opinion on how to best solve this issue:
> I've got a package [0] that uses dbconfig-common to manage its
> da
Hi Mentors,
TLDR: in order to execute a command as another user, should `sudo` or
`su --command` be used?
I'd like to get your opinion on how to best solve this issue:
I've got a package [0] that uses dbconfig-common to manage its
database. The database is owned by a specific user (not root).
I
Hi Matt,
besides working on the Python-ITK package I also try to get the package
for the latest official ANTs release done. One problem I came across is
that they download test data from http://slicer.kitware.com/midas3/
during the build.
Since the source packages are supposed to be self con
Hi again,
after droping the -O2 compiler option I was able to run
$ cd blat/test ; make
blat -verbose=0 throwback/target1.fa throwback/query1.fa throwback/test.psl
Loaded 129433 letters in 1 sequences
Searched 2050 bases in 1 sequences
pslCheck -verbose=0 throwback/test.psl
blat -verbose=0 v29ski
Hi Jim,
On Wed, Feb 26, 2014 at 12:40:56AM -0800, Jim Kent wrote:
> No problem about the users not necessarily respecting the license. We
> already have the source code up on the net with no protection. We rely on
> the honor system, and the business remains good enough at least to pay the
> mor
No problem about the users not necessarily respecting the license. We
already have the source code up on the net with no protection. We rely on
the honor system, and the business remains good enough at least to pay the
mortgage.
I think there may be a problem with your build. I've got a _little
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