Re: ImageJ plugin for Orthanc

2014-12-15 Thread s . jodogne
Hi Andreas, sorry for my silence for longer than usual. I'm recovering slowly from my vacation (basically for the sake of OpenStreetMap work after the trip ;-)). :) I had a look into the package. It builds fine and is lintian clean and I simply assume that it is working (I have no

Help required for webapp on Tomcat8

2014-12-15 Thread Olivier Sallou
Hi, after receiving a bug to switch biomaj-watcher to Tomcat8, I made the required updates, but my webapp has deployment error on Tomcat 8. I ask here for help to ease the switch to v8 (from v6). I define a context xml with a docBase. I do not understand why it fails now any help would

Re: ImageJ plugin for Orthanc

2014-12-15 Thread s . jodogne
I admit I know to less about Java but the merge you are mentioning in a) is not clear to me. If you Build-Depend on libjson-simple-java the JAR which is in Debian's CLASSPATH will be available as well for the installed package if you Depend from libjson-simple-java. So I see no reason for

Re: Help required for webapp on Tomcat8

2014-12-15 Thread Emmanuel Bourg
Le 15/12/2014 10:00, Olivier Sallou a écrit : Caused by: java.lang.NullPointerException at org.apache.tomcat.util.scan.StandardJarScanner.process(StandardJarScanner.java:291) Hi Olivier, This looks like this bug: https://issues.apache.org/bugzilla/show_bug.cgi?id=56923 If you have

Re: ImageJ plugin for Orthanc

2014-12-15 Thread Andreas Tille
On Mon, Dec 15, 2014 at 10:00:09AM +0100, s.jodo...@chu.ulg.ac.be wrote: I admit I know to less about Java but the merge you are mentioning in a) is not clear to me. If you Build-Depend on libjson-simple-java the JAR which is in Debian's CLASSPATH will be available as well for the

Re: Help required for webapp on Tomcat8

2014-12-15 Thread Olivier Sallou
On 12/15/2014 10:18 AM, Emmanuel Bourg wrote: Le 15/12/2014 10:00, Olivier Sallou a écrit : Caused by: java.lang.NullPointerException at org.apache.tomcat.util.scan.StandardJarScanner.process(StandardJarScanner.java:291) Hi Olivier, This looks like this bug:

Re: unstable/experimental freeze policy

2014-12-15 Thread Sascha Steinbiss
Hi Andreas, I have just uploaded a new version of a package (new GenomeTools upstream version) to experimental [...] do you see much in the way of uploading this package to unstable as well? You always need to outweight policy with sane reasons / common sense. If you think GenomeTools and

Re: unstable/experimental freeze policy

2014-12-15 Thread Andreas Tille
Hi Sascha, On Mon, Dec 15, 2014 at 10:01:26AM +, Sascha Steinbiss wrote: You always need to outweight policy with sane reasons / common sense. If you think GenomeTools and its dependencies will pretty surely not feature any RC bug we will probably not need to keep new versions out of

Re: Bug#772949: RFS: imageio/1.0-1 [ITP] -- Library for reading and writing a wide range of image formats

2014-12-15 Thread Ghislain Vaillant
I have added this package to the debian-science imageanalysis and debian-med imaging-dev tasks. Cheers, - Ghis

Gimias status

2014-12-15 Thread Mathieu Malaterre
[CC me please] Does anyone knows what happen to gimias in Debian ? I see some interest in the past: https://wiki.debian.org/DebianMed/Meeting/Southport2012 but nothing since... Thx for updates, -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of unsubscribe.

Re: Gimias status

2014-12-15 Thread Andreas Tille
Hi Mathieu, On Mon, Dec 15, 2014 at 02:31:53PM +0100, Mathieu Malaterre wrote: [CC me please] Does anyone knows what happen to gimias in Debian ? I see some interest in the past: https://wiki.debian.org/DebianMed/Meeting/Southport2012 but nothing since... I'm reading Packaging

Re: ImageJ plugin for Orthanc

2014-12-15 Thread s . jodogne
So, there would be a global CLASSPATH that is shared across all the JVMs available in Debian, and that is implicitly used by the ImageJ package? Anyone could confirm this? As far as I know any JAR that's found in /usr/share/java will be included in CLASSPATH. (Please correct me if I'm

Re: r-cran-ape updated with the last upstream version - Need a sponsor to upload it

2014-12-15 Thread Dylan
Hi Andreas, 2014-12-12 15:46 GMT+01:00 Andreas Tille andr...@an3as.eu: Uploaded to experimental (due to freeze policy). Thanks for your work on this Thank you. Dylan