Re: Plastimatch ready for upload

2015-05-04 Thread Andreas Tille
Hi Gregory, On Mon, May 04, 2015 at 07:27:12PM -0400, Gregory Sharp wrote: > Thank you for looking at the package. That's the duty of the sponsor (which I did not fullfilled previously to the needed extend). > > Could you please explain your motivation to do the package that way? > > This was

Re: kmer-tools

2015-05-04 Thread Afif Elghraoui
Hi, Andreas, On الأحد 3 أيار 2015 00:24, Andreas Tille wrote: Hi Afif, On Sat, May 02, 2015 at 10:53:34PM -0700, Afif Elghraoui wrote: I have checked your last commits and would like to comment on it. You have created several binary packages - withpout checking I'm guessing one per binary in

Re: Plastimatch ready for upload

2015-05-04 Thread Gregory Sharp
Dear Andreas, Thank you for looking at the package. On Fri, 1 May 2015 23:50:37 +0200 Andreas Tille wrote: > Hi Gregory, > > On Tue, Apr 28, 2015 at 05:17:15PM -0400, Gregory Sharp wrote: > > I've prepared the plastimatch version upgrade in the debian-med > > subversion. Please let me know if

Re: Help needed to update to latest fastqc

2015-05-04 Thread Andreas Tille
Hi Olivier, On Mon, May 04, 2015 at 06:41:10PM +0200, Olivier Sallou wrote: > File fastqc/uk/ac/babraham/FastQC/Sequence/Fast5File.java imports > HDFS5Factory from ch.systemsx.cisd.hdf5 > > but jhdf5.jar only contains files like: ncsa/hdf/hdf5lib/... and no > HDF5Factory > > this jhdf5 is not t

Re: Help needed to update to latest fastqc

2015-05-04 Thread Olivier Sallou
After a quick look, there is a library issue (at least) File fastqc/uk/ac/babraham/FastQC/Sequence/Fast5File.java imports HDFS5Factory from ch.systemsx.cisd.hdf5 but jhdf5.jar only contains files like: ncsa/hdf/hdf5lib/... and no HDF5Factory this jhdf5 is not the correctl lib (or an other one i

Re: Help needed to update to latest fastqc

2015-05-04 Thread Olivier Sallou
On 05/03/2015 08:54 AM, Andreas Tille wrote: > Hi, > > I tried to upgrade to the latest fasqc version. When doing so I decided > to move from SVN to Git: > > Vcs-Git: git://anonscm.debian.org/debian-med/fastqc.git > > Upstream needs a new Build-Depends libjhdf5-java which I added. > However, I