Re: [MoM] Re: kmer-tools

2015-05-15 Thread Andreas Tille
[CCing libkaz maintainer Balint, the Debian Med team wants to build a package that contains a libkaz code copy with a patch] Hi, On Fri, May 15, 2015 at 11:06:18PM -0700, Afif Elghraoui wrote: > >>>OK, feel free to discuss the diff here in case you might be in doubt. > > I'm not sure how usefu

Re: [MoM] Re: kmer-tools

2015-05-15 Thread Afif Elghraoui
Hi, Andreas, On الإثنين 11 أيار 2015 00:47, Andreas Tille wrote: >>>So to be sure you can at least check the diff whether kmer >>>upstream has patched the lib to some extend. If there is no diff you >>>are done - if not it might be worth inspecting it more deeply. >>> >> >>I will check. Like

Help in cmake / itk issue needed (Was: Plastimatch ready for upload)

2015-05-15 Thread Andreas Tille
Hi Gregory, On Fri, May 15, 2015 at 04:23:10PM -0400, Gregory Sharp wrote: > > > Cool! Thanks for these interesting changes! It was not clear to me > > whether it also fixes bug #778066 and thus I did not closed it. > > > > #778066 is not fixed. OK. > Unfortunately, the update did not g

Re: subread: limit architectures

2015-05-15 Thread Andreas Tille
Hi Alex, On Fri, May 15, 2015 at 09:56:39PM +0200, Alex Mestiashvili wrote: > > The problem is that the code builds but tests fail in some strange way. Well, if I understand things correctly the test is part of the package build process and thus in the case of a failed test no package is build,

Re: Group Policy for Creating Standalone Metapackages

2015-05-15 Thread Afif Elghraoui
Hello, On الجمعـة 15 أيار 2015 06:18, Andreas Tille wrote: Hi Afif, On Fri, May 15, 2015 at 01:56:04AM -0700, Afif Elghraoui wrote: Just about every piece of documentation I read about equivs says that although it was originally designed for creating dummy/fake packages, it can also be used f

Re: Plastimatch ready for upload

2015-05-15 Thread Gregory Sharp
Hi Andreas, On Thu, 14 May 2015 18:58:34 +0200 Andreas Tille wrote: > Cool! Thanks for these interesting changes! It was not clear to me > whether it also fixes bug #778066 and thus I did not closed it. > #778066 is not fixed. Unfortunately, the update did not go as well as I had hoped

Re: DCMTK performance problem

2015-05-15 Thread Andreas Tille
Hi, please discuss the issue in bug #785400 which I just filed on behalf of Sebastien. Kind regards Andreas. On Fri, May 15, 2015 at 05:15:39PM +0200, Sebastien Jodogne wrote: > Hi all, > > After updating my development PC from Ubuntu 12.10 to Ubuntu 14.10 > LTS, I have observed a very s

DCMTK performance problem

2015-05-15 Thread Sebastien Jodogne
Hi all, After updating my development PC from Ubuntu 12.10 to Ubuntu 14.10 LTS, I have observed a very severe degradation in the performance of "storescp" from the DCMTK package. Sending 100 DICOM files to storescp took 25 seconds instead of less than 2 seconds in my previous version of Ubun

Re: [MoM] Re: ITP: r-cran-igraph -- GNU R package for igraph

2015-05-15 Thread Andreas Tille
Hi Alba, On Fri, May 15, 2015 at 11:56:28AM +0100, Alba Crespi wrote: > > Aaaarg, for sure that's OK. My bad! Git-buildpackage recently changed > > its interface and droped the deprecated "git" in favour of consistently > > using gbp. I had assumed that I changed every occurance in the policy >

Re: Group Policy for Creating Standalone Metapackages

2015-05-15 Thread Andreas Tille
Hi Afif, On Fri, May 15, 2015 at 01:56:04AM -0700, Afif Elghraoui wrote: > > Just about every piece of documentation I read about equivs says that > although it was originally designed for creating dummy/fake packages, it > can also be used for creating metapackages. So I am asking if I can > cre

Re: fastq status?

2015-05-15 Thread olivier.sal...@codeless.fr
On 05/14/2015 06:22 PM, Andreas Tille wrote: > On Thu, May 14, 2015 at 08:57:43AM +0200, olivier.sal...@codeless.fr wrote: >>> Debian Science team. In other words: While you stated that what we >>> need is probably a different code base than we need for fastqc the >>> package might need some love

Re: Group Policy for Creating Standalone Metapackages

2015-05-15 Thread Afif Elghraoui
Hi, Andreas. On الخميس 14 أيار 2015 10:01, Andreas Tille wrote: > >> Is it fine to put an equivs configuration file in the Debian Med VCS >> repository for the metapackage instead of the full Debian directory? >> I didn't find any examples of this kind of situation within Debian >> Med. > > I'm s