Fwd: Associating packages with file types using appstream succeeded

2016-02-10 Thread Andreas Tille
Hi, since I think this result of the Debian Med sprint might be of more general interest thus I'm simply forwarding to debian-devel what was posted on Debian Med list. Thread start was here: https://lists.debian.org/debian-med/2016/02/msg00049.html Kind regards Andreas. - Forwarded

Re: Associating packages with file types using appstream succeeded

2016-02-10 Thread Charles Plessy
Le Wed, Feb 10, 2016 at 07:15:02PM +0100, Petter Reinholdtsen a écrit : > > The goal was to use appstream to announce file format support in a > non-GUI package (aka one without a .desktop file), and we used the khmer > package as an example. It is now listed as a package supporting the > applica

Re: Jon says "thanks" ...

2016-02-10 Thread jison
:) Still recovering from massive backlog of urgent things, we will get to it! (and pick up on all other threads) J:) > On Wed, Feb 10, 2016 at 11:14:00PM +0700, Matus Kalas wrote: >> This is absolutely amazing Andreas! Thank you very much to everybody who >> contributed! > > I admit I would sl

Re: Associating packages with file types using appstream succeeded

2016-02-10 Thread Andreas Tille
Hi Petter, On Wed, Feb 10, 2016 at 07:15:02PM +0100, Petter Reinholdtsen wrote: > > I am happy to report that the experiment we conducted during the Debian > Med meeting in Denmark was successful, after fixing a bug in the > appstream import system. Very cool. Thanks a lot for this very importa

Re: Jon says "thanks" ...

2016-02-10 Thread Andreas Tille
On Wed, Feb 10, 2016 at 11:14:00PM +0700, Matus Kalas wrote: > This is absolutely amazing Andreas! Thank you very much to everybody who > contributed! I admit I would sleep even better if somebody would confirm that you can effectively use this script: https://github.com/bio-tools/biotoolsConn

Associating packages with file types using appstream succeeded

2016-02-10 Thread Petter Reinholdtsen
I am happy to report that the experiment we conducted during the Debian Med meeting in Denmark was successful, after fixing a bug in the appstream import system. The goal was to use appstream to announce file format support in a non-GUI package (aka one without a .desktop file), and we used the k

Re: Jon says "thanks" ...

2016-02-10 Thread Matus Kalas
This is absolutely amazing Andreas! Thank you very much to everybody who contributed! Cheers, Matus To give an update here is a list of currently existing edam files in the Debian Med repositories (Git+SVN): $ find . -name "*.edam" | sort ./a/abacas.edam ./a/aegean.edam ./a/ampliconnoise.eda

Re: Mentioning EDAM files in DebianMed Policy

2016-02-10 Thread jison
Folks The link to OLS was to a deprecated ontology browser running an ancient version of EDAM. Please use this one instead (it's in beta, so go steady): http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=EDAM Alternatively you can use this: http://bioportal.bioontology.org/ontologies/EDAM/

Re: Mentioning EDAM files in DebianMed Policy

2016-02-10 Thread Andreas Tille
Hi Fabian, thanks for the very helpful and needed hint. I was waiting a bit since Michael intended to work on the structure of the policy a bit and I did not wanted to shot on a moving target. Michael, could you comment on this how and where you would like to see this information? Kind regards

Re: Jon says "thanks" ...

2016-02-10 Thread Andreas Tille
On Tue, Feb 09, 2016 at 06:50:51PM +0100, Andreas Tille wrote: > Hi Jon, > > you are now faced with my habit to repost private mails to public > mailing list if there is no privat but rather publicly interesting > content in it. Please stick to the list since otherwise publicly > relevant informa